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SR-VP_4-6_scaffold_141_476970_prodigal-single.1__X__X__00276
Bact-VirSR-VP_4-6_scaffold_141_476970_prodigal-single.1__X__X__00276
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-197
Domain cluster:
rep: SR-VP_2-4_scaffold_141_1208361_prodigal-single.1__X__X__00297__D46-187
CATH (12)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5bpdA02 | 3.30.870.10 | Alpha Beta › 2-Layer Sandwich › Endonuclease; Chain A › Endonuclease Chain A | 0.77 | 53.0 | 6.21e-01 | 87.2% | 95.8% |
| 3hsiA02 | 3.30.870.10 | Alpha Beta › 2-Layer Sandwich › Endonuclease; Chain A › Endonuclease Chain A | 0.69 | 62.0 | 6.07e-01 | 92.8% | 87.4% |
| 1f0iA01 | 3.30.870.10 | Alpha Beta › 2-Layer Sandwich › Endonuclease; Chain A › Endonuclease Chain A | 0.67 | 60.0 | 5.78e-01 | 91.8% | 86.9% |
| 3sq3A01 | 3.30.870.10 | Alpha Beta › 2-Layer Sandwich › Endonuclease; Chain A › Endonuclease Chain A | 0.62 | 50.0 | 5.18e-01 | 86.7% | 88.5% |
| 4v1ap00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.59 | 27.0 | 3.83e-01 | 71.3% | 87.6% |
| 4avnA00 | 3.20.20.40 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › 1, 4-beta cellobiohydrolase | 0.54 | 43.0 | 3.34e-01 | 81.0% | 94.8% |
| 5oycB00 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.52 | 40.0 | 3.30e-01 | 80.5% | 90.6% |
| 1ygyB03 | 3.30.1330.90 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › D-3-phosphoglycerate dehydrogenase; domain 3 | 0.52 | 32.0 | 3.74e-01 | 76.9% | 84.9% |
| 2e9yB00 | 3.40.1160.10 | Alpha Beta › 3-Layer(aba) Sandwich › Carbamate kinase › Acetylglutamate kinase-like | 0.52 | 37.0 | 3.17e-01 | 71.8% | 91.3% |
| 1i60A00 | 3.20.20.150 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Divalent-metal-dependent TIM barrel enzymes | 0.51 | 41.0 | 3.62e-01 | 82.6% | 97.1% |
| 3itlD00 | 3.20.20.150 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Divalent-metal-dependent TIM barrel enzymes | 0.51 | 40.0 | 3.12e-01 | 81.5% | 69.2% |
| 2qw5A00 | 3.20.20.150 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Divalent-metal-dependent TIM barrel enzymes | 0.51 | 40.0 | 3.40e-01 | 81.5% | 94.2% |
ECOD (28)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5040938 | 300.1.1.6 ↗ | a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › Regulator_TrmB | 0.79 | 60.0 | 6.40e-01 | 98.5% | 88.8% |
| 5039060 | 300.1.1.0 ↗ | a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease | 0.78 | 58.0 | 6.44e-01 | 96.9% | 93.0% |
| 4022881 | 300.1.1.0 ↗ | a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease | 0.77 | 66.0 | 5.93e-01 | 89.7% | 98.5% |
| 4943753 | 300.1.1.0 ↗ | a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease | 0.76 | 62.0 | 6.76e-01 | 96.9% | 98.8% |
| 4943752 | 300.1.1.8 ↗ | a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › PLDc_2 | 0.75 | 63.0 | 6.56e-01 | 89.7% | 93.9% |
| 4947198 | 300.1.1.0 ↗ | a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease | 0.74 | 57.0 | 6.16e-01 | 99.0% | 92.7% |
| 3352395 | 300.1.1.1 ↗ | a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › PLDc | 0.73 | 61.0 | 5.14e-01 | 86.7% | 79.7% |
| 3401497 | 300.1.1.11 ↗ | a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › PLDc_3 | 0.73 | 63.0 | 6.31e-01 | 88.7% | 97.4% |
| 3829808 | 300.1.1.16 ↗ | a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › PLDc, PLDc_2 | 0.73 | 69.0 | 4.70e-01 | 100.0% | 50.6% |
| 3648485 | 300.1.1.16 ↗ | a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › PLDc, PLDc_2 | 0.73 | 69.0 | 5.59e-01 | 100.0% | 97.9% |
| 3965027 | 300.1.1.5 ↗ | a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › RE_NgoFVII | 0.72 | 58.0 | 6.33e-01 | 93.3% | 100.0% |
| 3372677 | 300.1.1.16 ↗ | a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › PLDc, PLDc_2 | 0.72 | 62.0 | 4.14e-01 | 89.2% | 38.0% |
| 5073939 | 300.1.1.0 ↗ | a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease | 0.71 | 54.0 | 6.00e-01 | 99.5% | 100.0% |
| 4953124 | 300.1.1.0 ↗ | a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease | 0.70 | 61.0 | 5.71e-01 | 89.7% | 89.1% |
| 3908644 | 300.1.1.11 ↗ | a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › PLDc_3 | 0.70 | 66.0 | 6.07e-01 | 97.9% | 84.6% |
| 3780531 | 300.1.1.1 ↗ | a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › PLDc | 0.70 | 60.0 | 5.82e-01 | 89.2% | 82.8% |
| 3893275 | 300.1.1.1 ↗ | a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › PLDc | 0.70 | 66.0 | 5.59e-01 | 100.0% | 89.2% |
| 3289626 | 300.1.1.1 ↗ | a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › PLDc | 0.69 | 57.0 | 5.61e-01 | 86.7% | 88.1% |
| 3399777 | 300.1.1.8 ↗ | a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › PLDc_2 | 0.68 | 61.0 | 5.63e-01 | 92.8% | 79.2% |
| 3723090 | 300.1.1.0 ↗ | a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease | 0.67 | 56.0 | 5.32e-01 | 86.2% | 80.0% |
| 5056735 | 300.1.1.0 ↗ | a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease | 0.64 | 59.0 | 5.78e-01 | 97.9% | 91.9% |
| 3629588 | 300.1.1.3 ↗ | a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › Tyr-DNA_phospho | 0.63 | 52.0 | 5.26e-01 | 86.7% | 87.2% |
| 5045102 | 331.1.1.0 ↗ | a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like | 0.55 | 22.0 | 3.04e-01 | 77.4% | 71.6% |
| 4656758 | 7554.1.1.1 ↗ | a/b three-layered sandwiches › 2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain › 2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain › 2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain › iPGM_N | 0.55 | 41.0 | 3.82e-01 | 92.8% | 62.5% |
| 3407118 | 2007.1.2.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I | 0.54 | 38.0 | 3.98e-01 | 92.8% | 75.7% |
| 4974435 | 243.1.1.0 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like | 0.54 | 25.0 | 3.47e-01 | 80.0% | 89.5% |
| 3838990 | 2007.5.1.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › SGNH hydrolase › SGNH hydrolase | 0.52 | 47.0 | 4.20e-01 | 94.9% | 82.2% |
| 3947188 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.51 | 25.0 | 3.24e-01 | 82.1% | 82.9% |