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SR-VP_4-6_scaffold_141_476970_prodigal-single.1__X__X__00290

Bact-Vir

SR-VP_4-6_scaffold_141_476970_prodigal-single.1__X__X__00290

Identity

Kingdom:
phage

Quality

67.2 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 11-38_50-121
PDB
Domain cluster: representative
CATH (42)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6i8xA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.65 49.0 4.29e-01 80.0% 94.6%
6bu2A00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.65 45.0 3.92e-01 72.0% 78.7%
6phxA01 2.70.98.60 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › alpha-galactosidase from lactobacil brevis 0.64 50.0 3.56e-01 83.0% 97.7%
4eqaC00 2.40.128.650 Mainly Beta › Beta Barrel › Lipocalin › 0.64 49.0 4.31e-01 82.0% 98.0%
1o8vA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.63 48.0 4.34e-01 80.0% 100.0%
1cbiA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.63 48.0 4.33e-01 81.0% 100.0%
4exrA01 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.63 40.0 4.38e-01 70.0% 79.0%
7mhuA01 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.63 52.0 3.53e-01 91.0% 94.9%
1yemB00 2.40.320.10 Mainly Beta › Beta Barrel › Hypothetical Protein Pfu-838710-001 › Hypothetical Protein Pfu-838710-001 0.60 39.0 3.27e-01 71.0% 39.2%
1p9rA01 3.30.450.90 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.60 33.0 3.22e-01 75.0% 46.8%
2jkgA00 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.60 43.0 3.64e-01 75.0% 47.3%
6c1zA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.60 47.0 4.25e-01 85.0% 99.3%
3cwxA00 3.40.1420.20 Alpha Beta › 3-Layer(aba) Sandwich › Inhibitor of vertebrate lysozyme, Ivy › Pathogenicity island component CagD 0.60 53.0 4.92e-01 99.0% 81.6%
2rcqA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.60 47.0 4.17e-01 84.0% 96.5%
1lfoA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.59 44.0 4.08e-01 79.0% 100.0%
1yqfB00 3.10.280.10 Alpha Beta › Roll › Mitochondrial Matrix Protein; Chain A › Mitochondrial glycoprotein 0.59 45.0 3.76e-01 84.0% 46.3%
2a0aA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.59 45.0 4.13e-01 82.0% 100.0%
1n7vA02 2.60.330.10 Mainly Beta › Sandwich › receptor-binding protein prd1-p2, domain 2 › receptor-binding protein prd1-p2, domain 2 0.58 45.0 4.28e-01 86.0% 99.2%
4exrA02 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.57 36.0 4.10e-01 70.0% 88.7%
3ei3A02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.57 41.0 2.87e-01 76.0% 35.4%
1ealA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.57 43.0 3.99e-01 80.0% 100.0%
1yr2A02 2.130.10.120 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Prolyl oligopeptidase, N-terminal domain 0.57 43.0 2.99e-01 80.0% 40.5%
4o9dA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.57 46.0 3.07e-01 87.0% 76.2%
3mswA00 2.40.128.720 Mainly Beta › Beta Barrel › Lipocalin › 0.56 43.0 3.89e-01 81.0% 70.5%
4ozuA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.56 48.0 3.32e-01 95.0% 77.5%
1l0qA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.56 47.0 3.34e-01 92.0% 89.0%
4csdB00 2.120.10.70 Mainly Beta › 6 Propeller › Neuraminidase › Fucose-specific lectin 0.55 48.0 3.58e-01 97.0% 79.8%
1mdaH00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.55 41.0 2.79e-01 79.0% 46.7%
4azzA00 2.60.120.560 Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 0.55 42.0 3.61e-01 83.0% 58.2%
3hrgA02 3.30.420.260 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Protein of unknown function DUF3822, C-terminal domain 0.55 35.0 3.43e-01 72.0% 57.0%
2bs6A01 2.40.128.190 Mainly Beta › Beta Barrel › Lipocalin › 0.54 41.0 4.43e-01 97.0% 94.0%
5jowA02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.54 42.0 3.37e-01 83.0% 48.5%
3u4yA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.54 44.0 3.10e-01 88.0% 64.9%
3wyfE00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 37.0 3.31e-01 71.0% 62.0%
4ozxA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.53 44.0 3.24e-01 92.0% 98.9%
3hdjA01 3.30.1780.10 Alpha Beta › 2-Layer Sandwich › ornithine cyclodeaminase, domain 1 › ornithine cyclodeaminase, domain 1 0.53 43.0 3.87e-01 88.0% 86.4%
1jofA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.53 45.0 3.12e-01 95.0% 98.1%
5gm0A01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.53 42.0 3.67e-01 84.0% 68.2%
2joxA00 2.60.40.4240 Mainly Beta › Sandwich › Immunoglobulin-like › Transcription activator, Churchill 0.53 37.0 3.63e-01 72.0% 84.0%
2wdtC02 3.30.1490.420 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Ubiquitin carboxyl-terminal hydrolase, domain 2 0.53 41.0 4.13e-01 96.0% 84.2%
5jozB02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.52 40.0 3.27e-01 84.0% 48.7%
1vr8A00 3.40.1000.20 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › TM1622-like 0.52 44.0 4.04e-01 95.0% 86.7%
ECOD (58)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3332798 241.15.1.0 a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain 0.75 69.0 5.69e-01 100.0% 84.6%
1720172 241.15.1.1 a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain › Spo0M 0.69 61.0 5.71e-01 97.0% 100.0%
4990736 241.1.1.0 a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone 0.68 60.0 5.16e-01 98.0% 86.9%
4029617 5.1.11.39 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 9-bladed › DUF7899 0.68 49.0 3.10e-01 74.0% 58.9%
5022763 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.64 48.0 3.30e-01 78.0% 37.5%
3227515 9.1.1.0 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.63 48.0 4.42e-01 80.0% 100.0%
3941131 5.1.4.36 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › MMS1_N 0.63 45.0 3.09e-01 75.0% 35.4%
4955776 881.2.1.0 a+b three layers › Mog1p/PsbP-like › TM1622-like › TM1622-like 0.63 40.0 3.52e-01 72.0% 43.2%
3931011 9.1.1.0 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.63 50.0 4.59e-01 85.0% 98.5%
3233005 207.1.1.81 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.63 39.0 2.90e-01 81.0% 24.7%
4986209 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.62 43.0 4.05e-01 71.0% 79.0%
3219544 207.1.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.62 39.0 2.75e-01 80.0% 20.7%
7390 219.1.1.6 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Acetyltransf_2 0.62 49.0 3.59e-01 85.0% 62.4%
3817434 331.3.1.43 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › PDF2_C 0.62 51.0 3.77e-01 91.0% 61.6%
1005444 295.2.1.1 a+b two layers › ssDNA-binding transcriptional regulator domain-like › Outer surface protein E › Outer surface protein E › OspE 0.61 45.0 3.90e-01 77.0% 84.1%
3786743 5.1.5.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.60 48.0 3.58e-01 87.0% 79.2%
4568749 2004.1.1.585 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_15, AAA_21, AAA_23 0.60 44.0 2.95e-01 76.0% 34.6%
5014331 2004.1.1.293 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_15 0.60 44.0 2.58e-01 76.0% 16.5%
2336349 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.60 41.0 4.38e-01 71.0% 88.8%
3556710 9.1.1.24 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin_7 0.60 46.0 4.27e-01 82.0% 100.0%
3226500 207.1.1.81 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.60 40.0 2.92e-01 78.0% 25.7%
3903171 5.1.4.8 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CNH 0.59 42.0 2.98e-01 74.0% 44.8%
2552758 9.1.1.24 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin_7 0.59 45.0 4.02e-01 80.0% 93.4%
2145749 330.19.1.1 a+b two layers › dsRBD-like › Anti-CRISPR protein Acr30-35/AcrF1 › Anti-CRISPR protein Acr30-35/AcrF1 › Acr30-35_AcrF1 0.58 40.0 4.41e-01 72.0% 88.7%
3240866 244.3.1.0 a+b two layers › FAD-linked reductases, C-terminal domain-like › SufE/NifU › SufE/NifU 0.58 41.0 4.13e-01 73.0% 76.0%
3496494 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.58 40.0 2.71e-01 71.0% 23.7%
3615587 5.1.4.169 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_RSE1_2nd 0.58 43.0 3.04e-01 78.0% 36.7%
3269700 5.1.4.8 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CNH 0.57 42.0 3.03e-01 78.0% 43.7%
3739965 298.1.1.0 a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 0.57 46.0 3.14e-01 88.0% 45.2%
4927832 9.1.1.0 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.57 42.0 4.12e-01 78.0% 92.7%
5014685 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.57 36.0 4.30e-01 99.0% 98.5%
4197502 295.1.1.9 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › Imm42 0.57 43.0 3.67e-01 80.0% 69.1%
4243201 10.1.1.0 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.57 44.0 3.59e-01 82.0% 76.2%
4957722 71.1.1.0 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB 0.56 37.0 3.37e-01 94.0% 48.6%
3540949 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.56 45.0 3.25e-01 86.0% 87.9%
3610662 5.1.5.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.56 39.0 2.89e-01 73.0% 74.0%
3168104 5.1.5.52 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › EMC1_C 0.56 42.0 2.54e-01 80.0% 27.1%
2229 5.1.4.25 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Me-amine-dh_H 0.55 41.0 2.79e-01 79.0% 46.7%
4950432 210.1.1.5 a+b four layers › Ntn/PP2C › Ntn › Proteasome subunits › DUF2121 0.55 48.0 3.85e-01 95.0% 62.6%
5076987 2004.1.1.308 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_21 0.54 47.0 3.26e-01 93.0% 36.5%
3387142 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.54 36.0 2.94e-01 72.0% 36.3%
4955729 10.1.1.0 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.53 42.0 3.52e-01 84.0% 53.5%
1870982 10.1.1.41 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › GH43_C2 0.53 42.0 3.38e-01 85.0% 51.2%
3278208 5.1.4.40 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PQQ_2 0.53 44.0 2.91e-01 90.0% 85.1%
3520868 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.53 47.0 4.16e-01 95.0% 80.0%
5009351 10.1.1.117 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Thermopsin 0.53 43.0 3.23e-01 88.0% 58.0%
165299 375.1.1.34 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Churchill 0.53 37.0 3.63e-01 72.0% 84.0%
4010956 5.1.4.332 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PF29748 0.53 46.0 3.05e-01 93.0% 33.6%
4991720 3692.1.1.0 a+b two layers › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain 0.52 42.0 3.92e-01 87.0% 75.2%
3311716 5.3.1.0 beta duplicates or obligate multimers › beta-propeller-like › beta-Prism II › beta-Prism II 0.52 44.0 4.07e-01 93.0% 100.0%
3266624 9.2.1.0 beta barrels › Lipocalins/Streptavidin › Avidin/Streptavidin › Avidin/Streptavidin 0.52 43.0 4.21e-01 93.0% 95.5%
3184015 10.1.1.22 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › DUF1349 0.52 40.0 3.15e-01 85.0% 65.7%
4182580 223.2.1.33 a+b three layers › Profilin-like › profilin-like › profilin-like › Fuz_longin_3 0.52 33.0 3.03e-01 72.0% 48.5%
3264341 5.1.4.147 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › RMC1_N 0.51 42.0 3.00e-01 91.0% 47.7%
3666734 5.3.1.0 beta duplicates or obligate multimers › beta-propeller-like › beta-Prism II › beta-Prism II 0.51 44.0 4.06e-01 95.0% 100.0%
3970247 9.11.1.0 beta barrels › Lipocalins/Streptavidin › YdhA-like › YdhA-like 0.51 40.0 3.93e-01 95.0% 80.0%
5038289 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.50 43.0 3.99e-01 98.0% 89.6%
4466450 63.1.1.0 beta barrels › Mannose 6-phosphate receptor domain › Mannose 6-phosphate receptor domain › Mannose 6-phosphate receptor domain 0.50 45.0 4.00e-01 98.0% 79.3%