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SR-VP_4-6_scaffold_141_476970_prodigal-single.1__X__X__00294
Bact-VirSR-VP_4-6_scaffold_141_476970_prodigal-single.1__X__X__00294
Identity
- Kingdom:
- phage
Quality
50.0
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 424-540
Domain cluster:
representative
CATH (69)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4yarA02 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.75 | 48.0 | 4.73e-01 | 100.0% | 61.0% |
| 3s7iB01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.74 | 50.0 | 4.23e-01 | 100.0% | 43.2% |
| 1cauA00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.72 | 48.0 | 4.18e-01 | 100.0% | 44.2% |
| 2bnmA02 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.70 | 49.0 | 4.87e-01 | 100.0% | 70.0% |
| 1djxA03 | 2.60.40.150 | Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain | 0.70 | 52.0 | 5.03e-01 | 77.8% | 98.5% |
| 2vvdA00 | 2.60.120.720 | Mainly Beta › Sandwich › Jelly Rolls › | 0.70 | 62.0 | 5.58e-01 | 98.3% | 95.7% |
| 4icwA00 | 2.60.40.150 | Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain | 0.69 | 51.0 | 4.96e-01 | 76.9% | 96.9% |
| 2df7A02 | 2.60.120.660 | Mainly Beta › Sandwich › Jelly Rolls › icosahedral virus | 0.69 | 62.0 | 5.88e-01 | 100.0% | 97.1% |
| 1uwwB00 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.68 | 60.0 | 5.26e-01 | 98.3% | 92.7% |
| 7wqxA01 | 2.60.120.290 | Mainly Beta › Sandwich › Jelly Rolls › Spermadhesin, CUB domain | 0.68 | 56.0 | 5.84e-01 | 99.1% | 97.2% |
| 2cjsA01 | 2.60.40.150 | Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain | 0.68 | 50.0 | 4.52e-01 | 76.1% | 82.4% |
| 4hslA01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.68 | 44.0 | 3.94e-01 | 100.0% | 46.4% |
| 2dmhA00 | 2.60.40.150 | Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain | 0.68 | 50.0 | 4.73e-01 | 76.9% | 90.0% |
| 3n0aA02 | 2.60.40.1110 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.67 | 49.0 | 4.73e-01 | 76.1% | 99.3% |
| 2b39A10 | 2.60.120.1540 | Mainly Beta › Sandwich › Jelly Rolls › | 0.67 | 56.0 | 5.64e-01 | 100.0% | 89.7% |
| 6b9tF01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.67 | 49.0 | 4.86e-01 | 100.0% | 72.0% |
| 1alyA00 | 2.60.120.40 | Mainly Beta › Sandwich › Jelly Rolls › | 0.66 | 60.0 | 5.61e-01 | 100.0% | 96.6% |
| 4xuoA00 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.66 | 59.0 | 5.43e-01 | 100.0% | 99.4% |
| 1xe7A00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.66 | 49.0 | 4.24e-01 | 100.0% | 49.5% |
| 4d0qA00 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.65 | 59.0 | 5.27e-01 | 98.3% | 96.3% |
| 2wq4A01 | 2.60.120.760 | Mainly Beta › Sandwich › Jelly Rolls › | 0.65 | 59.0 | 5.72e-01 | 100.0% | 96.9% |
| 1a8mA00 | 2.60.120.40 | Mainly Beta › Sandwich › Jelly Rolls › | 0.65 | 58.0 | 5.35e-01 | 100.0% | 97.4% |
| 3kq4B04 | 2.60.120.290 | Mainly Beta › Sandwich › Jelly Rolls › Spermadhesin, CUB domain | 0.65 | 53.0 | 5.50e-01 | 99.1% | 93.7% |
| 1ji6A02 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.65 | 58.0 | 5.24e-01 | 100.0% | 87.0% |
| 2y38A01 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.64 | 58.0 | 4.61e-01 | 100.0% | 86.7% |
| 2c4xA02 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.64 | 56.0 | 5.13e-01 | 97.4% | 98.1% |
| 1jhjA00 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.64 | 57.0 | 5.11e-01 | 98.3% | 85.7% |
| 5t5lA00 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.62 | 56.0 | 4.52e-01 | 100.0% | 97.4% |
| 4lplA00 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.62 | 57.0 | 5.33e-01 | 100.0% | 96.5% |
| 2e26A02 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.62 | 56.0 | 5.10e-01 | 100.0% | 97.4% |
| 3nngA00 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.62 | 54.0 | 5.01e-01 | 98.3% | 93.5% |
| 4pqqA00 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.62 | 55.0 | 5.05e-01 | 100.0% | 91.7% |
| 5dzeA00 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.62 | 55.0 | 4.66e-01 | 100.0% | 97.0% |
| 1nziA01 | 2.60.120.290 | Mainly Beta › Sandwich › Jelly Rolls › Spermadhesin, CUB domain | 0.62 | 54.0 | 5.45e-01 | 99.1% | 96.5% |
| 3ugfB02 | 2.60.120.560 | Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 | 0.61 | 55.0 | 4.84e-01 | 100.0% | 99.4% |
| 2v72A00 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.61 | 55.0 | 5.25e-01 | 100.0% | 98.5% |
| 2n59A00 | 2.60.40.2420 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.61 | 42.0 | 4.49e-01 | 98.3% | 82.2% |
| 3am2A02 | 2.60.120.1050 | Mainly Beta › Sandwich › Jelly Rolls › | 0.61 | 50.0 | 5.06e-01 | 99.1% | 89.7% |
| 2c9kA02 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.60 | 54.0 | 4.88e-01 | 100.0% | 86.6% |
| 4rft000 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.60 | 54.0 | 4.83e-01 | 100.0% | 91.4% |
| 2ypdB01 | 2.60.120.650 | Mainly Beta › Sandwich › Jelly Rolls › Cupin | 0.59 | 54.0 | 3.90e-01 | 100.0% | 52.6% |
| 1f8vC00 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.59 | 52.0 | 3.91e-01 | 100.0% | 74.9% |
| 1novA00 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.59 | 52.0 | 3.91e-01 | 100.0% | 73.8% |
| 5a3lA00 | 2.60.120.1560 | Mainly Beta › Sandwich › Jelly Rolls › | 0.59 | 51.0 | 4.23e-01 | 95.7% | 62.7% |
| 5xnrA02 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.59 | 51.0 | 4.10e-01 | 98.3% | 97.1% |
| 1ca1A02 | 2.60.60.20 | Mainly Beta › Sandwich › Lipoxygenase-1 › PLAT/LH2 domain | 0.58 | 46.0 | 4.63e-01 | 99.1% | 82.5% |
| 7eehA01 | 2.60.120.620 | Mainly Beta › Sandwich › Jelly Rolls › q2cbj1_9rhob like domain | 0.58 | 50.0 | 3.96e-01 | 100.0% | 44.6% |
| 3winE03 | 2.60.120.1090 | Mainly Beta › Sandwich › Jelly Rolls › | 0.58 | 49.0 | 5.01e-01 | 99.1% | 98.2% |
| 6lnhB01 | 2.60.120.620 | Mainly Beta › Sandwich › Jelly Rolls › q2cbj1_9rhob like domain | 0.57 | 48.0 | 3.92e-01 | 100.0% | 48.4% |
| 4y5tB00 | 2.60.120.620 | Mainly Beta › Sandwich › Jelly Rolls › q2cbj1_9rhob like domain | 0.56 | 50.0 | 3.77e-01 | 100.0% | 40.7% |
| 3kt4A02 | 3.60.130.20 | Alpha Beta › 4-Layer Sandwich › Double-stranded beta-helix › Oxoglutarate/iron-dependent oxygenase, C-terminal degradation domain | 0.55 | 49.0 | 3.63e-01 | 100.0% | 93.4% |
| 4ie5A01 | 2.60.120.590 | Mainly Beta › Sandwich › Jelly Rolls › Alpha-ketoglutarate-dependent dioxygenase AlkB-like | 0.54 | 48.0 | 3.71e-01 | 100.0% | 43.2% |
| 6oauA02 | 2.60.60.20 | Mainly Beta › Sandwich › Lipoxygenase-1 › PLAT/LH2 domain | 0.54 | 39.0 | 3.90e-01 | 75.2% | 76.2% |
| 4u7cB04 | 3.30.1490.100 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain | 0.54 | 40.0 | 4.20e-01 | 80.3% | 96.3% |
| 2rftA02 | 3.90.209.20 | Alpha Beta › Alpha-Beta Complex › Hemagglutinin (Ha1 Chain); Chain: A; domain 1 › Haemagglutinin, alpha/beta domain, HA1 chain | 0.54 | 48.0 | 3.84e-01 | 100.0% | 63.2% |
| 6h8oA00 | 3.40.1310.20 | Alpha Beta › 3-Layer(aba) Sandwich › Replication Protein E1; Chain: A, › | 0.54 | 31.0 | 3.45e-01 | 100.0% | 70.5% |
| 3iwzA01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.54 | 40.0 | 3.82e-01 | 77.8% | 71.6% |
| 3emrA00 | 2.60.120.620 | Mainly Beta › Sandwich › Jelly Rolls › q2cbj1_9rhob like domain | 0.54 | 48.0 | 3.66e-01 | 100.0% | 45.7% |
| 2z69B00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.53 | 39.0 | 3.61e-01 | 76.9% | 63.3% |
| 1wfmA00 | 2.60.40.150 | Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain | 0.52 | 43.0 | 4.14e-01 | 91.5% | 81.9% |
| 5h5oA00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.51 | 38.0 | 3.72e-01 | 76.9% | 73.6% |
| 3dn7A00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.51 | 37.0 | 3.51e-01 | 76.9% | 65.5% |
| 1zybA01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.51 | 38.0 | 3.10e-01 | 78.6% | 43.5% |
| 4ev0D01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.50 | 37.0 | 3.56e-01 | 76.9% | 70.1% |
| 1te5A00 | 3.60.20.10 | Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain | 0.50 | 42.0 | 3.32e-01 | 92.3% | 83.4% |
| 3fx3B01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.50 | 37.0 | 3.59e-01 | 78.6% | 69.9% |
| 4d7sA02 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.50 | 36.0 | 3.56e-01 | 76.1% | 70.8% |
| 3shrA02 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.50 | 37.0 | 3.54e-01 | 77.8% | 70.8% |
| 5j3uA01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.50 | 36.0 | 3.60e-01 | 76.1% | 73.4% |
ECOD (74)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4991099 | 10.2.1.0 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) | 0.74 | 53.0 | 6.01e-01 | 100.0% | 96.7% |
| 3891207 | 11.2.1.1 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 | 0.71 | 54.0 | 5.30e-01 | 79.5% | 93.6% |
| 3246607 | 11.2.1.1 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 | 0.70 | 53.0 | 4.39e-01 | 77.8% | 88.8% |
| 3937892 | 11.2.1.1 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 | 0.70 | 52.0 | 4.43e-01 | 77.8% | 84.7% |
| 4027866 | 11.2.1.1 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 | 0.70 | 52.0 | 4.58e-01 | 77.8% | 80.6% |
| 3533876 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.69 | 58.0 | 5.92e-01 | 98.3% | 92.2% |
| 4997709 | 10.12.1.39 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 | 0.69 | 46.0 | 4.60e-01 | 100.0% | 65.0% |
| 3241410 | 10.32.1.218 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › DUF7154 | 0.69 | 57.0 | 5.89e-01 | 97.4% | 95.5% |
| 3221888 | 10.32.1.218 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › DUF7154 | 0.68 | 58.0 | 5.77e-01 | 100.0% | 87.8% |
| 3202618 | 11.2.1.1 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 | 0.68 | 50.0 | 4.89e-01 | 77.8% | 98.5% |
| 3435000 | 10.32.1.8 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › CBM_4_9 | 0.67 | 59.0 | 5.25e-01 | 97.4% | 89.4% |
| 3939866 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.67 | 59.0 | 5.95e-01 | 98.3% | 98.3% |
| 4244478 | 10.32.1.8 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › CBM_4_9 | 0.67 | 60.0 | 4.30e-01 | 98.3% | 45.1% |
| 4305531 | 10.32.1.8 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › CBM_4_9 | 0.67 | 58.0 | 5.29e-01 | 95.7% | 92.9% |
| 3738629 | 11.2.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain | 0.67 | 50.0 | 4.91e-01 | 77.8% | 93.6% |
| 3716837 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.67 | 57.0 | 5.56e-01 | 100.0% | 83.8% |
| 3949369 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.66 | 58.0 | 4.98e-01 | 95.7% | 88.1% |
| 3471680 | 11.2.1.1 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 | 0.66 | 50.0 | 4.71e-01 | 78.6% | 93.6% |
| 3619736 | 10.4.1.1 ↗ | beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › CUB | 0.65 | 57.0 | 5.61e-01 | 100.0% | 88.0% |
| 3903710 | 10.4.1.1 ↗ | beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › CUB | 0.65 | 55.0 | 5.58e-01 | 99.1% | 92.2% |
| 3568443 | 11.2.1.17 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › NT-C2 | 0.65 | 48.0 | 4.48e-01 | 77.8% | 90.7% |
| 4887934 | 10.3.1.8 ↗ | beta sandwiches › jelly-roll › TNF-like › TNF-like › Bc2l-C_N | 0.65 | 58.0 | 5.57e-01 | 100.0% | 94.9% |
| 4509186 | 10.32.1.8 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › CBM_4_9 | 0.65 | 58.0 | 5.16e-01 | 99.1% | 95.9% |
| 4932670 | 10.1.2.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) | 0.65 | 50.0 | 5.40e-01 | 89.7% | 100.0% |
| 5064593 | 10.1.2.181 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) › CBM_4_9 | 0.65 | 54.0 | 5.23e-01 | 90.6% | 81.5% |
| 3522617 | 10.32.1.3 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Calpain_III | 0.64 | 59.0 | 5.41e-01 | 100.0% | 88.7% |
| 3562185 | 10.3.1.1 ↗ | beta sandwiches › jelly-roll › TNF-like › TNF-like › TNF | 0.64 | 58.0 | 5.22e-01 | 100.0% | 90.8% |
| 3396396 | 10.32.1.216 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › MAM | 0.64 | 57.0 | 4.72e-01 | 99.1% | 89.8% |
| 4304353 | 10.32.1.8 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › CBM_4_9 | 0.64 | 56.0 | 5.18e-01 | 98.3% | 97.4% |
| 3828980 | 10.32.1.241 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › SAC9_GBDL_2nd | 0.63 | 57.0 | 4.75e-01 | 100.0% | 79.0% |
| 3927107 | 10.4.1.1 ↗ | beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › CUB | 0.63 | 54.0 | 5.32e-01 | 100.0% | 88.8% |
| 3591997 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.63 | 55.0 | 5.33e-01 | 100.0% | 86.9% |
| 4127135 | 10.32.1.12 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › CBM_6 | 0.62 | 56.0 | 5.12e-01 | 100.0% | 90.3% |
| 4426314 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.62 | 56.0 | 5.20e-01 | 100.0% | 99.3% |
| 3179028 | 10.32.1.2 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › F5_F8_type_C | 0.61 | 54.0 | 4.83e-01 | 98.3% | 94.1% |
| 3336470 | 10.32.1.194 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › APD1-4_N | 0.61 | 53.0 | 5.45e-01 | 95.7% | 100.0% |
| 4001960 | 10.4.1.1 ↗ | beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › CUB | 0.61 | 53.0 | 5.12e-01 | 100.0% | 83.0% |
| 3830721 | 207.1.1.43 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_3 | 0.61 | 52.0 | 3.44e-01 | 94.9% | 26.7% |
| 3231215 | 10.4.1.1 ↗ | beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › CUB | 0.60 | 53.0 | 5.23e-01 | 100.0% | 93.6% |
| 3309702 | 207.1.1.43 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_3 | 0.59 | 52.0 | 3.36e-01 | 96.6% | 23.7% |
| 3543919 | 10.10.1.1 ↗ | beta sandwiches › jelly-roll › Lipase/lipooxygenase domain (PLAT/LH2 domain) › Lipase/lipooxygenase domain (PLAT/LH2 domain) › PLAT | 0.59 | 42.0 | 4.01e-01 | 75.2% | 80.0% |
| 3242376 | 10.4.1.0 ↗ | beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain | 0.58 | 51.0 | 5.00e-01 | 99.1% | 89.2% |
| 3401798 | 10.10.1.0 ↗ | beta sandwiches › jelly-roll › Lipase/lipooxygenase domain (PLAT/LH2 domain) › Lipase/lipooxygenase domain (PLAT/LH2 domain) | 0.58 | 42.0 | 4.21e-01 | 75.2% | 79.2% |
| 4332271 | 10.10.1.1 ↗ | beta sandwiches › jelly-roll › Lipase/lipooxygenase domain (PLAT/LH2 domain) › Lipase/lipooxygenase domain (PLAT/LH2 domain) › PLAT | 0.58 | 46.0 | 4.59e-01 | 100.0% | 81.3% |
| 4997182 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.58 | 51.0 | 4.61e-01 | 100.0% | 89.7% |
| 3518442 | 10.10.1.1 ↗ | beta sandwiches › jelly-roll › Lipase/lipooxygenase domain (PLAT/LH2 domain) › Lipase/lipooxygenase domain (PLAT/LH2 domain) › PLAT | 0.58 | 42.0 | 4.12e-01 | 76.1% | 73.1% |
| 3619733 | 10.4.1.0 ↗ | beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain | 0.58 | 51.0 | 4.92e-01 | 99.1% | 87.4% |
| 3624853 | 11.2.1.1 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 | 0.57 | 53.0 | 4.78e-01 | 99.1% | 88.4% |
| 4942276 | 10.12.1.0 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix | 0.57 | 40.0 | 4.39e-01 | 98.3% | 94.4% |
| 2582354 | 302.1.1.1 ↗ | a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C | 0.57 | 43.0 | 4.44e-01 | 81.2% | 93.8% |
| 4333681 | 302.1.1.1 ↗ | a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C | 0.56 | 43.0 | 4.32e-01 | 82.1% | 88.3% |
| 3705532 | 302.1.1.1 ↗ | a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C | 0.56 | 42.0 | 4.15e-01 | 81.2% | 80.0% |
| 4027461 | 10.34.1.1 ↗ | beta sandwiches › jelly-roll › Protein CLP1 jelly-roll domain › Protein CLP1 jelly-roll domain › CLP1_N | 0.56 | 43.0 | 4.50e-01 | 97.4% | 89.5% |
| 4926832 | 302.1.1.1 ↗ | a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C | 0.56 | 43.0 | 4.22e-01 | 81.2% | 83.2% |
| 4964887 | 302.1.1.1 ↗ | a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C | 0.56 | 42.0 | 4.24e-01 | 81.2% | 86.7% |
| 4970098 | 302.1.1.1 ↗ | a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C | 0.56 | 43.0 | 4.43e-01 | 82.9% | 97.3% |
| 4977520 | 302.1.1.1 ↗ | a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C | 0.55 | 42.0 | 4.33e-01 | 81.2% | 92.7% |
| 3183322 | 4081.1.1.5 ↗ | beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Peptidase_M1_N | 0.55 | 47.0 | 3.84e-01 | 94.0% | 70.2% |
| 4434140 | 302.1.1.1 ↗ | a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C | 0.55 | 42.0 | 4.20e-01 | 81.2% | 86.7% |
| 3699048 | 302.1.1.1 ↗ | a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C | 0.55 | 42.0 | 4.24e-01 | 82.1% | 91.3% |
| 3743280 | 302.1.1.1 ↗ | a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C | 0.55 | 42.0 | 4.25e-01 | 82.1% | 89.6% |
| 4568546 | 302.1.1.1 ↗ | a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C | 0.55 | 41.0 | 4.16e-01 | 81.2% | 86.6% |
| 4946583 | 302.1.1.0 ↗ | a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain | 0.54 | 41.0 | 4.20e-01 | 81.2% | 92.2% |
| 4327417 | 302.1.1.1 ↗ | a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C | 0.54 | 42.0 | 4.24e-01 | 82.9% | 91.3% |
| 4939155 | 302.1.1.1 ↗ | a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C | 0.54 | 42.0 | 4.20e-01 | 82.9% | 89.1% |
| 3665041 | 302.1.1.1 ↗ | a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C | 0.54 | 41.0 | 4.05e-01 | 82.1% | 82.4% |
| 3299192 | 302.1.1.1 ↗ | a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C | 0.54 | 40.0 | 4.18e-01 | 80.3% | 93.6% |
| 4035839 | 302.1.1.1 ↗ | a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C | 0.53 | 41.0 | 4.13e-01 | 82.1% | 87.8% |
| 5049412 | 302.1.1.1 ↗ | a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C | 0.53 | 40.0 | 3.99e-01 | 82.1% | 81.6% |
| 3573883 | 302.1.1.1 ↗ | a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C | 0.53 | 40.0 | 3.96e-01 | 81.2% | 97.6% |
| 4418109 | 302.1.1.1 ↗ | a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C | 0.53 | 41.0 | 3.88e-01 | 83.8% | 85.3% |
| 4878426 | 10.12.1.1 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › cNMP_binding | 0.52 | 35.0 | 3.51e-01 | 96.6% | 68.1% |
| None | — | 0.51 | 37.0 | 3.68e-01 | 76.9% | 72.7% | |
| 3956907 | 10.12.1.1 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › cNMP_binding | 0.50 | 36.0 | 3.40e-01 | 76.1% | 65.3% |
D2
high
residues 573-706
Domain cluster:
representative
CATH (5)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4rkiA02 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.57 | 40.0 | 4.12e-01 | 100.0% | 73.8% |
| 3t0pA02 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.57 | 39.0 | 3.49e-01 | 100.0% | 49.2% |
| 1sxjH02 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.54 | 39.0 | 4.06e-01 | 100.0% | 80.5% |
| 1b77A00 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.51 | 40.0 | 3.38e-01 | 96.3% | 49.1% |
| 2r41A00 | 3.10.450.150 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › enterococcus faecalis protein | 0.50 | 33.0 | 3.73e-01 | 100.0% | 87.4% |
ECOD (12)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3387590 | 227.1.1.8 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_3 | 0.60 | 41.0 | 4.41e-01 | 100.0% | 80.9% |
| 4372908 | 227.1.1.0 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp | 0.57 | 39.0 | 4.04e-01 | 100.0% | 73.6% |
| 1871497 | 227.1.1.8 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_3 | 0.57 | 40.0 | 4.20e-01 | 100.0% | 79.8% |
| 3478160 | 227.1.1.12 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 | 0.54 | 40.0 | 4.12e-01 | 100.0% | 80.5% |
| 5043507 | 227.1.1.6 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C | 0.54 | 39.0 | 4.07e-01 | 100.0% | 83.3% |
| 3412152 | 227.1.1.12 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 | 0.52 | 39.0 | 3.98e-01 | 79.1% | 91.1% |
| 3574882 | 227.1.1.12 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 | 0.52 | 39.0 | 3.90e-01 | 100.0% | 76.1% |
| 3921654 | 227.1.1.12 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 | 0.52 | 39.0 | 3.96e-01 | 79.1% | 92.5% |
| 3798355 | 227.1.1.0 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp | 0.52 | 39.0 | 3.89e-01 | 79.1% | 88.6% |
| 4948360 | 227.1.1.6 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C | 0.52 | 39.0 | 4.05e-01 | 100.0% | 82.9% |
| 309454 | 227.1.1.0 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp | 0.51 | 39.0 | 3.98e-01 | 100.0% | 81.8% |
| 3744268 | 227.1.1.12 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 | 0.51 | 39.0 | 3.92e-01 | 100.0% | 80.7% |
D3
medium
residues 99-152_288-344