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SR-VP_4-6_scaffold_141_476970_prodigal-single.1__X__X__00307
Bact-VirSR-VP_4-6_scaffold_141_476970_prodigal-single.1__X__X__00307
Identity
- Kingdom:
- phage
Quality
58.2
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 26-125
Domain cluster:
rep: sw_7_scaffold_1_prodigal-single.1__X__X__00357__D2-137
CATH (23)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1wgsA00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.74 | 43.0 | 3.86e-01 | 95.0% | 42.9% |
| 2fhdA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.71 | 42.0 | 5.08e-01 | 97.0% | 93.5% |
| 4iupB01 | 2.40.50.40 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.70 | 40.0 | 4.84e-01 | 93.0% | 90.3% |
| 4qqgG00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.66 | 41.0 | 4.70e-01 | 99.0% | 86.1% |
| 2lccA00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.65 | 43.0 | 4.85e-01 | 98.0% | 88.2% |
| 1ixdA00 | 2.30.30.190 | Mainly Beta › Roll › SH3 type barrels. › CAP Gly-rich-like domain | 0.64 | 46.0 | 4.56e-01 | 100.0% | 71.2% |
| 1khiA01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.63 | 38.0 | 4.29e-01 | 95.0% | 80.0% |
| 1txqA00 | 2.30.30.190 | Mainly Beta › Roll › SH3 type barrels. › CAP Gly-rich-like domain | 0.62 | 42.0 | 4.81e-01 | 96.0% | 94.6% |
| 1m4zA01 | 2.30.30.490 | Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain | 0.62 | 45.0 | 3.64e-01 | 76.0% | 82.1% |
| 3be3A00 | 2.30.30.320 | Mainly Beta › Roll › SH3 type barrels. › DUF1653-like domain | 0.62 | 42.0 | 4.76e-01 | 100.0% | 92.1% |
| 2qi2A01 | 2.30.30.870 | Mainly Beta › Roll › SH3 type barrels. › Pelota, domain A | 0.62 | 38.0 | 3.75e-01 | 97.0% | 57.7% |
| 2vgmA01 | 2.30.30.870 | Mainly Beta › Roll › SH3 type barrels. › Pelota, domain A | 0.61 | 42.0 | 3.96e-01 | 99.0% | 58.2% |
| 2lt1A00 | 2.40.10.170 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.61 | 36.0 | 4.08e-01 | 97.0% | 77.3% |
| 2f5tX02 | 2.30.30.690 | Mainly Beta › Roll › SH3 type barrels. › | 0.60 | 40.0 | 4.16e-01 | 100.0% | 74.4% |
| 3g1jA00 | 2.30.30.350 | Mainly Beta › Roll › SH3 type barrels. › mobile metagenome of vibrio cholerae. Integron cassette protein vch_cass4. | 0.59 | 42.0 | 4.42e-01 | 97.0% | 82.2% |
| 3kf8A00 | 2.40.50.1040 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.59 | 37.0 | 2.92e-01 | 88.0% | 30.4% |
| 3cpfA01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.59 | 33.0 | 3.87e-01 | 96.0% | 81.5% |
| 3agjF01 | 2.30.30.870 | Mainly Beta › Roll › SH3 type barrels. › Pelota, domain A | 0.54 | 39.0 | 3.66e-01 | 98.0% | 61.4% |
| 1vw4M01 | 2.30.30.790 | Mainly Beta › Roll › SH3 type barrels. › | 0.53 | 45.0 | 4.11e-01 | 100.0% | 69.7% |
| 3lhoA01 | 3.10.180.50 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › | 0.52 | 40.0 | 3.11e-01 | 85.0% | 48.5% |
| 7xpkA01 | 2.30.30.490 | Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain | 0.51 | 45.0 | 3.99e-01 | 99.0% | 72.4% |
| 2v94B00 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.50 | 31.0 | 3.27e-01 | 98.0% | 66.7% |
| 1w4sA00 | 2.30.30.490 | Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain | 0.50 | 46.0 | 4.04e-01 | 100.0% | 80.1% |
ECOD (44)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3978997 | 4.31.1.1 ↗ | beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL | 0.83 | 51.0 | 5.25e-01 | 100.0% | 65.3% |
| 3283097 | 4.31.1.1 ↗ | beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL | 0.80 | 51.0 | 4.91e-01 | 100.0% | 59.1% |
| 4306285 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.75 | 44.0 | 5.12e-01 | 99.0% | 82.9% |
| 4629735 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.74 | 43.0 | 5.14e-01 | 99.0% | 87.7% |
| 3511007 | 4.8.1.6 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot | 0.74 | 47.0 | 4.45e-01 | 100.0% | 54.2% |
| 2527304 | 4.8.1.6 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot | 0.73 | 42.0 | 5.14e-01 | 96.0% | 91.8% |
| 3742938 | 4.1.1.102 ↗ | beta barrels › SH3 › SH3 › SH3 › Tudor_3 | 0.72 | 41.0 | 4.91e-01 | 95.0% | 86.2% |
| 3739064 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.71 | 42.0 | 5.03e-01 | 97.0% | 90.8% |
| 3484700 | 4.8.1.10 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › MSL3_chromo-like | 0.70 | 42.0 | 4.29e-01 | 96.0% | 60.0% |
| 3177469 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.70 | 44.0 | 5.08e-01 | 97.0% | 90.0% |
| 3768116 | 4.8.1.6 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot | 0.66 | 45.0 | 3.45e-01 | 100.0% | 32.6% |
| 3553413 | 4.8.1.6 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot | 0.66 | 45.0 | 4.82e-01 | 100.0% | 82.4% |
| 3812766 | 4.1.1.42 ↗ | beta barrels › SH3 › SH3 › SH3 › Agenet | 0.65 | 41.0 | 4.73e-01 | 96.0% | 90.0% |
| 572 | 4.1.1.18 ↗ | beta barrels › SH3 › SH3 › SH3 › CAP_GLY | 0.64 | 46.0 | 4.56e-01 | 100.0% | 71.2% |
| 3998386 | 4.1.1.18 ↗ | beta barrels › SH3 › SH3 › SH3 › CAP_GLY | 0.64 | 44.0 | 4.19e-01 | 96.0% | 60.9% |
| 3924619 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.63 | 41.0 | 3.84e-01 | 99.0% | 54.2% |
| 4427477 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.63 | 42.0 | 4.29e-01 | 100.0% | 70.5% |
| 3272197 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.63 | 42.0 | 4.14e-01 | 96.0% | 64.8% |
| 3255397 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.63 | 51.0 | 4.31e-01 | 100.0% | 54.8% |
| 3496040 | 4.1.1.20 ↗ | beta barrels › SH3 › SH3 › SH3 › BAH | 0.63 | 47.0 | 3.99e-01 | 100.0% | 49.4% |
| 3616769 | 4.1.1.287 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF5641 | 0.62 | 36.0 | 3.72e-01 | 96.0% | 60.0% |
| 4000622 | 4.1.1.287 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF5641 | 0.62 | 35.0 | 3.27e-01 | 96.0% | 45.0% |
| 4123449 | 4.8.1.35 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › DUF1292 | 0.61 | 38.0 | 4.07e-01 | 90.0% | 72.9% |
| 4981041 | 375.1.1.299 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › CPxCG_zf | 0.60 | 31.0 | 4.02e-01 | 90.0% | 96.0% |
| 3495220 | 4.1.1.20 ↗ | beta barrels › SH3 › SH3 › SH3 › BAH | 0.60 | 46.0 | 3.87e-01 | 100.0% | 50.0% |
| 4517543 | 4.23.1.2 ↗ | beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like › PF26356 | 0.60 | 45.0 | 4.22e-01 | 98.0% | 64.0% |
| 3327160 | 4.1.1.20 ↗ | beta barrels › SH3 › SH3 › SH3 › BAH | 0.59 | 45.0 | 3.87e-01 | 100.0% | 51.6% |
| 3609256 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.59 | 39.0 | 4.18e-01 | 98.0% | 78.8% |
| 3309829 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.59 | 45.0 | 3.80e-01 | 100.0% | 50.0% |
| 3625963 | 4.8.1.6 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot | 0.58 | 42.0 | 4.34e-01 | 100.0% | 78.9% |
| 4615629 | 4.1.1.449 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF1292 | 0.58 | 38.0 | 4.11e-01 | 94.0% | 77.6% |
| 3523144 | 4.1.1.20 ↗ | beta barrels › SH3 › SH3 › SH3 › BAH | 0.58 | 46.0 | 3.67e-01 | 100.0% | 44.2% |
| 5012425 | 4.11.1.0 ↗ | beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase | 0.57 | 43.0 | 3.92e-01 | 96.0% | 57.9% |
| 3803520 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.55 | 46.0 | 4.30e-01 | 100.0% | 73.3% |
| 3934274 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.55 | 45.0 | 3.98e-01 | 99.0% | 60.7% |
| 3213653 | 4.1.1.54 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_2 | 0.55 | 40.0 | 4.40e-01 | 94.0% | 96.2% |
| 5044011 | 11.1.4.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like | 0.54 | 25.0 | 2.88e-01 | 100.0% | 54.7% |
| 3167531 | 4.1.1.17 ↗ | beta barrels › SH3 › SH3 › SH3 › Ribosomal_L19 | 0.53 | 45.0 | 4.09e-01 | 100.0% | 68.1% |
| 3499940 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.51 | 47.0 | 3.88e-01 | 100.0% | 70.6% |
| 4534784 | 210.1.1.1 ↗ | a+b four layers › Ntn/PP2C › Ntn › Proteasome subunits › Proteasome | 0.51 | 42.0 | 3.51e-01 | 92.0% | 93.9% |
| 3830813 | 4.1.1.20 ↗ | beta barrels › SH3 › SH3 › SH3 › BAH | 0.50 | 46.0 | 3.72e-01 | 100.0% | 70.8% |
| None | — | 0.50 | 45.0 | 3.64e-01 | 100.0% | 52.7% | |
| 3391153 | 206.1.1.20 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PK_Tyr_Ser-Thr | 0.50 | 36.0 | 2.63e-01 | 77.0% | 92.8% |
| 3991229 | 4.1.1.20 ↗ | beta barrels › SH3 › SH3 › SH3 › BAH | 0.50 | 46.0 | 3.86e-01 | 100.0% | 68.5% |