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SR-VP_4-6_scaffold_141_476970_prodigal-single.1__X__X__00314
Bact-VirSR-VP_4-6_scaffold_141_476970_prodigal-single.1__X__X__00314
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 13-174
Domain cluster:
rep: PH2015_18_scaffold_2_prodigal-single.1__X__X__00357__D3-170
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF23780.2 best | S-AdoMet_lyase | 29.3 | 1.00e-06 | 84.6% | 80.5% |
CATH (10)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2iruA02 | 3.30.70.3300 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.59 | 45.0 | 4.81e-01 | 91.4% | 91.3% |
| 1r89A03 | 3.30.70.590 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Poly(A) polymerase predicted RNA binding domain | 0.58 | 45.0 | 4.89e-01 | 100.0% | 97.0% |
| 1ztpA01 | 3.30.760.10 | Alpha Beta › 2-Layer Sandwich › RNA Cap, Translation Initiation Factor Eif4e › RNA Cap, Translation Initiation Factor Eif4e | 0.55 | 42.0 | 3.90e-01 | 81.5% | 97.6% |
| 1rtzA00 | 3.30.70.560 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK | 0.55 | 46.0 | 4.80e-01 | 91.4% | 99.3% |
| 3oe3C00 | 2.40.128.200 | Mainly Beta › Beta Barrel › Lipocalin › C-type lysozyme inhibitor | 0.54 | 31.0 | 3.88e-01 | 71.6% | 100.0% |
| 1pbuA00 | 3.30.70.1010 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Translation elongation factor EF1B, gamma chain, conserved domain | 0.54 | 43.0 | 4.31e-01 | 100.0% | 85.2% |
| 1vx7X00 | 3.30.1360.210 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › | 0.53 | 33.0 | 4.00e-01 | 85.2% | 100.0% |
| 1vs3A01 | 3.30.70.580 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Pseudouridine synthase I, catalytic domain, N-terminal subdomain | 0.52 | 34.0 | 3.96e-01 | 78.4% | 99.0% |
| 4z9mB02 | 3.30.590.10 | Alpha Beta › 2-Layer Sandwich › Creatine Kinase; Chain A, domain 2 › Glutamine synthetase/guanido kinase, catalytic domain | 0.51 | 37.0 | 3.50e-01 | 74.7% | 94.4% |
| 1kvkA02 | 3.30.70.890 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › GHMP kinase, C-terminal domain | 0.50 | 37.0 | 3.91e-01 | 76.5% | 100.0% |
ECOD (20)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3866131 | 304.163.1.1 ↗ | a+b two layers › Alpha-beta plaits › ATP-binding protein TM_1403 insertion domain › ATP-binding protein TM_1403 insertion domain › R1_ABCA1 | 0.77 | 39.0 | 5.47e-01 | 76.5% | 100.0% |
| 3840041 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.77 | 73.0 | 6.56e-01 | 99.4% | 84.8% |
| 3583072 | 304.34.1.0 ↗ | a+b two layers › Alpha-beta plaits › Nucleoside diphosphate kinases › Nucleoside diphosphate kinases | 0.66 | 45.0 | 5.23e-01 | 90.7% | 96.5% |
| 5020494 | 304.18.1.0 ↗ | a+b two layers › Alpha-beta plaits › Anticodon-binding domain of PheRS › Anticodon-binding domain of PheRS | 0.63 | 36.0 | 4.59e-01 | 84.0% | 98.9% |
| 3288140 | 304.44.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal protein S10 › Ribosomal protein S10 | 0.62 | 44.0 | 5.06e-01 | 72.8% | 98.3% |
| 3667518 | 328.1.1.1 ↗ | a+b two layers › IF3-like › AlbA-like › AlbA-like › Alba | 0.61 | 31.0 | 3.72e-01 | 91.4% | 73.3% |
| 4024919 | 304.12.1.1 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal protein S6 › Ribosomal protein S6 › Ribosomal_S6 | 0.60 | 40.0 | 4.64e-01 | 79.0% | 91.7% |
| 3463183 | 304.25.1.0 ↗ | a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain | 0.59 | 41.0 | 4.69e-01 | 75.3% | 97.5% |
| 4936727 | 304.3.1.4 ↗ | a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain › MCR_D | 0.58 | 39.0 | 4.59e-01 | 91.4% | 97.4% |
| 3282303 | 304.6.1.0 ↗ | a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain | 0.56 | 43.0 | 3.73e-01 | 80.9% | 84.0% |
| 5009820 | 304.28.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain | 0.55 | 38.0 | 4.18e-01 | 75.3% | 86.2% |
| 2986050 | 304.12.1.1 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal protein S6 › Ribosomal protein S6 › Ribosomal_S6 | 0.55 | 41.0 | 4.53e-01 | 90.7% | 94.7% |
| 5007893 | 304.6.1.0 ↗ | a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain | 0.54 | 42.0 | 3.96e-01 | 80.2% | 70.5% |
| 3001000 | 304.6.1.2 ↗ | a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain › ALO | 0.52 | 46.0 | 3.69e-01 | 94.4% | 80.3% |
| 3724738 | 219.1.1.6 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Acetyltransf_2 | 0.52 | 44.0 | 3.54e-01 | 90.7% | 57.1% |
| 3445473 | 11.1.1.855 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF26102 | 0.51 | 40.0 | 3.36e-01 | 81.5% | 73.1% |
| 3509084 | 5.1.10.10 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 12-bladed › Vps16_N | 0.51 | 23.0 | 3.44e-01 | 78.4% | 100.0% |
| 5080826 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.51 | 38.0 | 4.05e-01 | 93.8% | 88.3% |
| 3525488 | 304.47.1.1 ↗ | a+b two layers › Alpha-beta plaits › SEA domain › SEA domain › SEA | 0.51 | 39.0 | 4.23e-01 | 92.0% | 99.2% |
| 3248113 | 219.1.1.6 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Acetyltransf_2 | 0.50 | 43.0 | 3.63e-01 | 90.7% | 60.6% |