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SR-VP_4-6_scaffold_141_476970_prodigal-single.1__X__X__00335
Bact-VirSR-VP_4-6_scaffold_141_476970_prodigal-single.1__X__X__00335
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 5-50
D2
high
residues 224-322
Domain cluster:
rep: Filtrate_w_scaffold_3_prodigal-single.1__X__X__00065__D179-304
D3
high
residues 330-426
Domain cluster:
rep: ON968454.1__UXO93980.1__Pan3_58__00059__D5-101
D4
medium
residues 159-223
Domain cluster:
rep: NC_031022.1__YP_009280252.1__BI056_gp065__00065__D70-126
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF05265.21 best | DUF723 | 66.4 | 3.20e-18 | 90.8% | 92.1% |
D5
medium
residues 450-496
Domain cluster:
rep: gwf1_scaffold_41_prodigal-single.1__X__X__00347__D241-286
CATH (5)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3zqsA02 | 3.10.110.20 | Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › RWD domain-like | 0.59 | 49.0 | 3.99e-01 | 100.0% | 83.7% |
| 4jrfA03 | 1.10.20.150 | Mainly Alpha › Orthogonal Bundle › Histone, subunit A › | 0.53 | 43.0 | 3.48e-01 | 100.0% | 92.5% |
| 1bhpA00 | 3.30.1350.10 | Alpha Beta › 2-Layer Sandwich › Crambin › Thionin-like | 0.52 | 36.0 | 3.66e-01 | 97.9% | 77.8% |
| 3sghA00 | 1.25.40.390 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.51 | 41.0 | 2.44e-01 | 100.0% | 60.5% |
| 1o0uA01 | 3.40.1480.10 | Alpha Beta › 3-Layer(aba) Sandwich › glycerate kinase, domain 1 › MOFRL domain | 0.51 | 38.0 | 2.72e-01 | 91.5% | 68.4% |
ECOD (3)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4526935 | 1.1.7.50 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › EF-G_D2 | 0.56 | 46.0 | 3.31e-01 | 100.0% | 96.2% |
| 3243183 | 7516.1.1.35 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Branch | 0.54 | 42.0 | 2.65e-01 | 87.2% | 21.8% |
| 4954184 | 101.1.2.1 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_1 | 0.52 | 44.0 | 3.58e-01 | 95.7% | 90.0% |