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SR-VP_4-6_scaffold_141_476970_prodigal-single.1__X__X__00351

Bact-Vir

SR-VP_4-6_scaffold_141_476970_prodigal-single.1__X__X__00351

Identity

Kingdom:
phage

Quality

89.1 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-112
PDB
CATH (52)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2ia2A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.81 49.0 6.14e-01 97.3% 100.0%
2co5A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.78 56.0 6.13e-01 97.3% 89.1%
1p6rA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.76 51.0 5.82e-01 89.3% 92.7%
3ecoB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.76 50.0 4.76e-01 96.4% 58.1%
2qenA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.76 47.0 5.78e-01 92.9% 100.0%
1fokA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.75 49.0 5.47e-01 98.2% 85.1%
1bjaA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.75 48.0 5.23e-01 96.4% 76.8%
5zyrA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.75 48.0 4.33e-01 96.4% 48.3%
3lstA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.74 46.0 5.14e-01 97.3% 80.2%
3dp7B01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.74 48.0 5.20e-01 97.3% 78.5%
3b73B00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.73 53.0 5.84e-01 93.8% 93.3%
5dymA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.73 52.0 5.63e-01 95.5% 85.4%
2qwwC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.73 48.0 4.44e-01 96.4% 53.6%
1xd7A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.73 65.0 6.48e-01 96.4% 97.4%
1r7jA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.73 44.0 4.89e-01 96.4% 75.6%
4chuA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.73 66.0 6.36e-01 98.2% 90.5%
3dv8A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 47.0 5.52e-01 93.8% 94.9%
1tbxB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 50.0 5.49e-01 100.0% 87.8%
5iceA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 49.0 5.15e-01 97.3% 77.2%
4ev0A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.71 47.0 5.59e-01 93.8% 98.7%
3gwzA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.71 45.0 4.95e-01 96.4% 79.8%
2fnaA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.71 46.0 5.46e-01 96.4% 100.0%
1zybA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.70 44.0 3.48e-01 92.0% 31.8%
2y75A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 63.0 6.11e-01 99.1% 95.2%
3mczA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 45.0 5.16e-01 99.1% 89.0%
7cluA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 47.0 5.24e-01 98.2% 87.6%
4esbA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 51.0 5.35e-01 98.2% 83.5%
2va8A03 1.10.3380.30 Mainly Alpha › Orthogonal Bundle › Sec63 N-terminal domain-like fold › 0.69 60.0 4.76e-01 93.8% 88.7%
2do7A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 47.0 5.40e-01 97.3% 97.5%
2pexA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 50.0 4.66e-01 100.0% 61.8%
5hvqC02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 48.0 5.14e-01 93.8% 82.7%
2xkoA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 48.0 5.23e-01 93.8% 86.2%
3l09A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 48.0 5.54e-01 95.5% 97.6%
6abqB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 50.0 5.16e-01 98.2% 81.1%
1lnwF01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 46.0 4.50e-01 96.4% 63.7%
3b02A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 47.0 5.31e-01 92.9% 94.1%
3e97A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 45.0 5.24e-01 91.1% 100.0%
3dkwG02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 46.0 5.24e-01 96.4% 100.0%
2gauA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 45.0 5.24e-01 92.9% 98.8%
5cvrA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 45.0 5.06e-01 92.9% 96.4%
4i2oA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 43.0 4.90e-01 94.6% 97.5%
7pzaA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 44.0 4.94e-01 92.0% 93.0%
1xdsB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 39.0 4.29e-01 98.2% 77.2%
3d0sA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 43.0 4.95e-01 92.9% 100.0%
2bgcA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 44.0 4.61e-01 93.8% 82.2%
2fmyA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 43.0 4.88e-01 95.5% 100.0%
1x1aA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 50.0 4.24e-01 92.0% 80.8%
1i7dA02 1.10.460.10 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; domain 2 › Topoisomerase I, domain 2 0.56 50.0 4.22e-01 96.4% 95.0%
5c17A00 3.30.450.410 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.56 50.0 4.05e-01 97.3% 93.2%
2h6bA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 39.0 4.19e-01 75.0% 86.5%
2wa0A01 1.10.10.1200 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › MAGE homology domain, winged helix WH1 motif 0.53 39.0 4.05e-01 100.0% 84.2%
6wfqC01 1.20.120.530 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › GntR ligand-binding domain-like 0.53 38.0 3.59e-01 76.8% 90.1%
ECOD (48)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3602462 101.1.2.26 alpha arrays › HTH › HTH › winged helix domain › HxlR 0.79 52.0 5.44e-01 97.3% 72.4%
3383404 101.1.2.154 alpha arrays › HTH › HTH › winged helix domain › CDT1_C 0.77 59.0 6.10e-01 79.5% 91.3%
4340348 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.77 71.0 6.53e-01 100.0% 83.6%
4992586 101.1.2.181 alpha arrays › HTH › HTH › winged helix domain › MCM_C 0.76 44.0 5.60e-01 88.4% 98.5%
5028866 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.76 50.0 5.27e-01 91.1% 74.0%
None 0.76 70.0 6.45e-01 100.0% 81.4%
5074949 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.75 49.0 5.46e-01 95.5% 83.3%
4002772 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.75 55.0 5.77e-01 94.6% 84.0%
5046890 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.75 56.0 5.21e-01 78.6% 75.7%
4955128 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.75 52.0 4.75e-01 99.1% 55.6%
4378545 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.75 69.0 6.22e-01 100.0% 77.7%
4144039 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.74 68.0 6.79e-01 99.1% 98.3%
4966294 101.1.2.894 alpha arrays › HTH › HTH › winged helix domain › DUF2240 0.74 47.0 5.40e-01 93.8% 88.7%
5028427 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.74 52.0 5.44e-01 96.4% 78.1%
4985673 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.73 50.0 5.58e-01 96.4% 87.8%
3489856 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.73 51.0 5.91e-01 88.4% 100.0%
4395667 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.73 51.0 5.90e-01 97.3% 100.0%
5022936 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.72 51.0 5.24e-01 93.8% 74.5%
4944051 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.72 53.0 4.55e-01 96.4% 50.0%
4927427 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.72 50.0 5.54e-01 93.8% 88.9%
5032459 101.1.2.297 alpha arrays › HTH › HTH › winged helix domain › Mrr_N 0.72 50.0 5.73e-01 99.1% 98.8%
4478972 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.72 55.0 5.61e-01 100.0% 81.8%
5053119 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.72 54.0 5.32e-01 100.0% 73.3%
5031078 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.71 50.0 5.31e-01 96.4% 81.0%
4995581 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.71 51.0 5.41e-01 96.4% 84.0%
5073255 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.70 48.0 5.08e-01 95.5% 78.0%
5056734 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.70 53.0 5.26e-01 90.2% 76.5%
154263 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.69 51.0 5.35e-01 98.2% 83.5%
4625029 101.1.2.88 alpha arrays › HTH › HTH › winged helix domain › Dimerisation 0.69 49.0 5.06e-01 96.4% 77.1%
4970540 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.69 54.0 5.82e-01 84.8% 95.8%
3550852 101.1.2.86 alpha arrays › HTH › HTH › winged helix domain › SMC_Nse1 0.69 48.0 5.08e-01 95.5% 81.0%
5079453 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.68 53.0 5.36e-01 80.4% 87.3%
164077 101.1.2.127 alpha arrays › HTH › HTH › winged helix domain › Cullin_Nedd8 0.68 47.0 4.95e-01 99.1% 78.2%
5057164 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.68 52.0 5.44e-01 88.4% 88.0%
4950232 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.68 46.0 5.13e-01 97.3% 86.7%
2494143 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.68 50.0 5.08e-01 98.2% 77.5%
3242401 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.68 50.0 5.34e-01 96.4% 89.5%
5000704 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.68 52.0 5.70e-01 100.0% 100.0%
5045022 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.66 53.0 5.21e-01 84.8% 81.7%
4928210 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.62 48.0 5.15e-01 92.9% 95.8%
3624335 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.61 56.0 4.77e-01 100.0% 92.0%
3577481 101.1.2.416 alpha arrays › HTH › HTH › winged helix domain › WH_Egal 0.60 55.0 4.81e-01 99.1% 100.0%
5019807 101.1.2.894 alpha arrays › HTH › HTH › winged helix domain › DUF2240 0.60 44.0 4.04e-01 76.8% 69.0%
5044560 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.58 53.0 4.13e-01 99.1% 79.6%
5074554 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.55 50.0 4.14e-01 97.3% 81.0%
4426239 101.1.2.22 alpha arrays › HTH › HTH › winged helix domain › PCI 0.53 45.0 4.16e-01 92.0% 81.4%
4506987 101.1.2.22 alpha arrays › HTH › HTH › winged helix domain › PCI 0.53 46.0 4.18e-01 95.5% 73.3%
4992657 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.52 47.0 3.64e-01 96.4% 52.8%