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SR-VP_4-6_scaffold_141_476970_prodigal-single.1__X__X__00370
Bact-VirSR-VP_4-6_scaffold_141_476970_prodigal-single.1__X__X__00370
Identity
- Kingdom:
- phage
Quality
66.2
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 217-284
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF07635.17 best | PSCyt1 | 25.9 | 1.70e-05 | 66.2% | 98.3% |
CATH (6)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1iyrA00 | 1.10.1490.10 | Mainly Alpha › Orthogonal Bundle › Dna Fragmentation Factor Alpha Subunit; Chain: A; › C-terminal domain of DFF45/ICAD (DFF-C domain) | 0.56 | 40.0 | 3.84e-01 | 77.9% | 81.9% |
| 1gxmB00 | 1.50.10.20 | Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › | 0.56 | 45.0 | 2.92e-01 | 91.2% | 38.0% |
| 7oq4Z01 | 1.20.120.950 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Uncharacterised protein DUF5062 | 0.52 | 37.0 | 3.33e-01 | 88.2% | 52.0% |
| 2qupA00 | 1.20.120.490 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Hypothetical protein TM1646-like domain | 0.51 | 38.0 | 3.29e-01 | 83.8% | 58.8% |
| 3ltjA00 | 1.25.10.10 | Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant | 0.51 | 36.0 | 2.75e-01 | 77.9% | 68.1% |
| 1b5lA00 | 1.20.1250.10 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.51 | 41.0 | 3.22e-01 | 91.2% | 75.0% |
ECOD (6)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3534981 | 173.1.1.1 ↗ | alpha arrays › Uteroglobin-like › Uteroglobin-like › Uteroglobin-like › Uteroglobin | 0.58 | 36.0 | 3.61e-01 | 80.9% | 60.0% |
| 4997918 | 7516.1.1.2 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glycos_transf_2 | 0.55 | 46.0 | 3.08e-01 | 97.1% | 54.3% |
| 3202028 | 102.5.1.0 ↗ | alpha arrays › HhH/H2TH › SAM-like subdomain in Sec63-like proteins › SAM-like subdomain in Sec63-like proteins | 0.55 | 42.0 | 4.30e-01 | 98.5% | 90.8% |
| 4065974 | 103.4.1.18 ↗ | alpha arrays › RuvA-C › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › PT-TG | 0.53 | 43.0 | 4.22e-01 | 92.6% | 86.7% |
| 3236926 | 5001.1.1.35 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Srsx | 0.51 | 42.0 | 2.77e-01 | 92.6% | 61.0% |
| 4981252 | 604.12.1.0 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain | 0.51 | 43.0 | 4.10e-01 | 95.6% | 82.5% |
D2
medium
residues 109-159
Domain cluster:
representative