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SR-VP_4-6_scaffold_141_476970_prodigal-single.1__X__X__00400

Bact-Vir

SR-VP_4-6_scaffold_141_476970_prodigal-single.1__X__X__00400

Identity

Kingdom:
phage

Quality

85.6 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-79
PDB
CATH (48)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4jpdA00 3.30.920.10 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Frataxin/CyaY 0.78 71.0 6.26e-01 100.0% 82.6%
1ekgA00 3.30.920.10 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Frataxin/CyaY 0.77 69.0 5.95e-01 100.0% 79.8%
3u1wA01 3.10.450.360 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.74 59.0 4.40e-01 84.4% 59.0%
4fr9A00 3.10.450.360 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.72 59.0 4.80e-01 88.3% 79.4%
4hbrA00 3.10.450.360 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.71 60.0 4.83e-01 89.6% 84.3%
4iglB00 2.180.10.10 Mainly Beta › Shell › RHS repeat-associated core › RHS repeat-associated core 0.70 53.0 3.08e-01 80.5% 36.6%
2htaA00 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.69 52.0 3.51e-01 80.5% 92.3%
1nkgA01 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.66 49.0 3.45e-01 80.5% 90.4%
1y13A00 3.30.479.10 Alpha Beta › 2-Layer Sandwich › Tetrahydropterin Synthase; Chain A › 6-pyruvoyl tetrahydropterin synthase/QueD 0.65 37.0 2.85e-01 84.4% 26.4%
7pthC01 3.40.720.10 Alpha Beta › 3-Layer(aba) Sandwich › Alkaline Phosphatase, subunit A › Alkaline Phosphatase, subunit A 0.63 51.0 3.18e-01 89.6% 81.4%
1p32B00 3.10.280.10 Alpha Beta › Roll › Mitochondrial Matrix Protein; Chain A › Mitochondrial glycoprotein 0.63 54.0 4.11e-01 93.5% 63.2%
1ukfA00 3.90.70.20 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.62 53.0 3.97e-01 93.5% 46.8%
4tpsA00 3.30.310.250 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Sporulation inhibitor of replication protein SirA 0.61 52.0 4.25e-01 92.2% 60.7%
3p34A02 3.30.1120.30 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › POLO box domain 0.61 44.0 4.09e-01 79.2% 60.8%
1yqfB00 3.10.280.10 Alpha Beta › Roll › Mitochondrial Matrix Protein; Chain A › Mitochondrial glycoprotein 0.60 50.0 3.87e-01 92.2% 71.8%
1tltA02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.60 45.0 3.50e-01 83.1% 67.2%
1w2tA02 2.60.120.560 Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 0.60 46.0 3.83e-01 83.1% 61.9%
2v43A01 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.59 49.0 3.66e-01 89.6% 39.3%
3pgbA01 2.70.98.20 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Copper amine oxidase, catalytic domain 0.58 45.0 2.77e-01 84.4% 32.4%
4ktpB02 2.60.420.10 Mainly Beta › Sandwich › Maltose phosphorylase, domain 3 › Maltose phosphorylase, domain 3 0.58 42.0 4.20e-01 76.6% 97.6%
3zxfA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.58 44.0 3.68e-01 81.8% 77.0%
1a78A00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.57 45.0 3.74e-01 84.4% 74.6%
3wucB00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.57 43.0 3.56e-01 80.5% 89.1%
2wsuB02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.57 45.0 3.63e-01 84.4% 70.8%
2wjsA03 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.57 42.0 3.29e-01 79.2% 56.5%
3jv1A00 3.10.280.10 Alpha Beta › Roll › Mitochondrial Matrix Protein; Chain A › Mitochondrial glycoprotein 0.56 47.0 3.69e-01 97.4% 68.7%
3ajvC02 3.40.1350.10 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.56 46.0 4.43e-01 94.8% 90.1%
1hlcA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.56 45.0 3.74e-01 84.4% 93.0%
6e20A00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.56 44.0 3.72e-01 85.7% 75.8%
1c1fA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.56 45.0 3.71e-01 85.7% 76.3%
3sluA02 3.10.450.350 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 39.0 3.36e-01 75.3% 74.5%
3ugfB02 2.60.120.560 Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 0.56 43.0 3.40e-01 87.0% 85.3%
2ogqA01 3.30.1120.30 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › POLO box domain 0.55 46.0 4.02e-01 97.4% 87.3%
3e9mB02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.53 43.0 3.29e-01 92.2% 73.2%
5nslA02 2.60.120.560 Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 0.53 42.0 3.07e-01 83.1% 73.5%
2la7A01 2.40.128.270 Mainly Beta › Beta Barrel › Lipocalin › 0.53 41.0 3.58e-01 87.0% 99.2%
4v0bA00 3.30.720.210 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.53 29.0 3.19e-01 72.7% 61.9%
1gjwA02 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.53 36.0 3.87e-01 93.5% 80.9%
4py5A01 3.30.310.10 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein 0.52 40.0 4.17e-01 88.3% 88.9%
4agrB00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.52 46.0 3.76e-01 98.7% 80.6%
3n6rA03 3.30.700.30 Alpha Beta › 2-Layer Sandwich › Glycoprotein, Type 4 Pilin › 0.52 41.0 3.60e-01 93.5% 77.4%
2qc5A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.52 41.0 2.83e-01 89.6% 37.2%
3kyaA02 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.51 40.0 2.62e-01 85.7% 80.9%
5h4eA02 3.30.920.50 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Beta-1,3-glucanase, C-terminal domain 0.51 41.0 3.66e-01 93.5% 75.6%
1w4tA01 3.30.2140.10 Alpha Beta › 2-Layer Sandwich › Arylamine N-acetyltransferase fold › Arylamine N-acetyltransferase 0.51 41.0 3.25e-01 90.9% 64.6%
2nvnA00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.50 42.0 3.62e-01 90.9% 58.3%
3vn5A01 3.30.310.10 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein 0.50 36.0 3.70e-01 94.8% 85.5%
5vxzA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.50 44.0 3.32e-01 98.7% 58.0%
ECOD (50)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4975637 241.2.1.0 a+b two layers › Type III secretory system chaperone-like › Frataxin-like › Frataxin-like 0.79 72.0 7.15e-01 100.0% 97.5%
4073557 241.2.1.1 a+b two layers › Type III secretory system chaperone-like › Frataxin-like › Frataxin-like › Frataxin_Cyay 0.78 71.0 6.50e-01 100.0% 88.0%
5045407 241.1.1.0 a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone 0.77 70.0 5.83e-01 100.0% 90.8%
None 0.76 68.0 4.31e-01 100.0% 24.8%
4544563 3561.1.1.1 a+b complex topology › Mediator of RNA polymerase II transcription subunit 17 › Mediator of RNA polymerase II transcription subunit 17 › Mediator of RNA polymerase II transcription subunit 17 › Med17 0.76 67.0 4.11e-01 100.0% 19.4%
5059099 241.2.1.0 a+b two layers › Type III secretory system chaperone-like › Frataxin-like › Frataxin-like 0.74 66.0 6.31e-01 98.7% 94.3%
5038704 2003.1.1.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains 0.73 66.0 4.98e-01 100.0% 74.4%
4302938 292.2.1.0 a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain 0.70 45.0 4.40e-01 85.7% 60.0%
1275015 292.2.1.1 a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain › POLO_box 0.70 50.0 4.55e-01 75.3% 59.8%
4681650 71.1.1.3 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolB 0.69 59.0 4.47e-01 92.2% 45.1%
3254948 633.23.1.0 alpha bundles › Bromodomain-like › Claudin › Claudin 0.69 47.0 3.43e-01 71.4% 26.5%
4937746 3016.1.1.0 a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases 0.69 59.0 5.19e-01 96.1% 98.3%
4052154 71.1.1.3 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolB 0.68 61.0 4.62e-01 96.1% 45.3%
3221927 207.1.1.81 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.68 50.0 3.32e-01 76.6% 22.4%
4003998 3794.1.1.0 a+b two layers › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Barrel domain in methylcrotonyl-CoA carboxylase alpha-subunit 0.68 50.0 4.20e-01 77.9% 81.5%
3838919 71.1.1.0 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB 0.68 49.0 4.00e-01 76.6% 44.3%
3781478 216.1.1.4 a+b two layers › UBC-like › UBC-like › UBC-like › RWD 0.67 59.0 5.41e-01 100.0% 91.4%
5058484 331.1.1.0 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.67 50.0 5.25e-01 97.4% 87.1%
3222216 12.1.1.0 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.66 49.0 5.12e-01 79.2% 100.0%
3211631 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.66 48.0 3.31e-01 77.9% 24.9%
3235531 207.1.1.52 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FBA_2 0.65 48.0 3.33e-01 76.6% 25.0%
5067782 331.1.1.0 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.65 50.0 5.18e-01 94.8% 88.6%
3409029 331.23.1.2 a+b two layers › TBP-like › Integrator IntS9/IntS11 C-terminal domain › Integrator IntS9/IntS11 C-terminal domain › IntS9_C 0.65 51.0 5.23e-01 90.9% 86.5%
3218903 207.1.1.81 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.65 48.0 3.47e-01 77.9% 29.0%
4865033 292.2.1.1 a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain › POLO_box 0.65 46.0 3.94e-01 84.4% 46.8%
3387155 298.1.1.24 a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › GFO_IDH_MocA_C3 0.64 49.0 3.68e-01 83.1% 69.7%
4311063 71.1.1.3 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolB 0.63 55.0 4.13e-01 94.8% 43.3%
2470719 7515.1.1.16 a/b three-layered sandwiches › Alkaline phosphatase-like › Alkaline phosphatase-like › Alkaline phosphatase-like › Sulfatase, Choline_sulf_C, SGSH_C 0.63 52.0 3.15e-01 89.6% 75.7%
4127270 71.1.1.3 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolB 0.63 53.0 4.05e-01 92.2% 44.3%
4064755 71.1.1.3 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolB 0.63 55.0 4.23e-01 96.1% 45.3%
3704327 292.2.1.0 a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain 0.62 45.0 4.73e-01 80.5% 84.3%
1320692 331.21.1.1 a+b two layers › TBP-like › Sporulation inhibitor of replication protein SirA › Sporulation inhibitor of replication protein SirA › SirA 0.61 52.0 4.25e-01 92.2% 60.7%
5014724 295.1.1.51 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › FtsQ_DivIB_C 0.61 42.0 3.81e-01 77.9% 54.0%
3222419 331.23.1.0 a+b two layers › TBP-like › Integrator IntS9/IntS11 C-terminal domain › Integrator IntS9/IntS11 C-terminal domain 0.61 47.0 4.77e-01 92.2% 84.0%
5040837 3794.1.1.0 a+b two layers › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Barrel domain in methylcrotonyl-CoA carboxylase alpha-subunit 0.60 44.0 4.47e-01 76.6% 96.0%
3931562 292.2.1.1 a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain › POLO_box 0.60 51.0 3.66e-01 93.5% 91.1%
3586827 274.1.1.25 a+b two layers › Pili subunits › Pili subunits › Pili subunits › ComGF 0.60 43.0 3.84e-01 76.6% 51.3%
4961714 298.1.1.24 a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › GFO_IDH_MocA_C3 0.59 45.0 3.42e-01 81.8% 55.7%
3952398 2003.1.1.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains 0.58 50.0 3.43e-01 100.0% 82.2%
2722036 10.1.1.4 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Gal-bind_lectin 0.58 47.0 3.79e-01 87.0% 70.9%
3993048 292.2.1.1 a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain › POLO_box 0.56 47.0 4.20e-01 93.5% 63.6%
1124186 3794.1.1.2 a+b two layers › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Barrel domain in methylcrotonyl-CoA carboxylase alpha-subunit › MCC_alpha_BT 0.56 42.0 3.77e-01 83.1% 80.5%
3246494 292.2.1.1 a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain › POLO_box 0.56 46.0 3.39e-01 97.4% 85.7%
3284638 4205.1.1.3 a+b two layers › SMI1/KNR4-like › SMI1/KNR4-like › SMI1/KNR4-like › SMI1_KNR4 0.56 46.0 3.86e-01 96.1% 70.3%
4992060 71.1.1.0 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB 0.55 49.0 3.73e-01 97.4% 83.4%
3519316 298.1.1.24 a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › GFO_IDH_MocA_C3 0.54 41.0 3.38e-01 88.3% 66.1%
3250295 73.1.1.0 beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain 0.52 43.0 4.03e-01 90.9% 85.3%
3823929 220.1.1.163 beta barrels › PH domain-like › PH domain-like › PH domain-like › DUF7046 0.51 44.0 3.77e-01 96.1% 60.0%
3788776 5.1.4.38 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › ANAPC1 0.51 42.0 2.83e-01 93.5% 81.5%
3966067 219.1.1.6 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Acetyltransf_2 0.50 41.0 2.79e-01 88.3% 74.2%