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SR-VP_4-6_scaffold_141_476970_prodigal-single.1__X__X__00430
Bact-VirSR-VP_4-6_scaffold_141_476970_prodigal-single.1__X__X__00430
Identity
- Kingdom:
- phage
Quality
86.7
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 4-104_590-647
Domain cluster:
representative
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF02511.21 best | Thy1 | 26.4 | 7.60e-06 | 40.2% | 31.4% |
| PF02511.21 | Thy1 | 29.9 | 6.40e-07 | 27.0% | 21.5% |
CATH (7)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2cfaA01 | 3.30.1360.170 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › | 0.67 | 59.0 | 6.19e-01 | 96.2% | 100.0% |
| 3ah5B00 | 3.30.1360.170 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › | 0.61 | 58.0 | 5.19e-01 | 98.1% | 100.0% |
| 1kq4A00 | 3.30.1360.170 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › | 0.61 | 58.0 | 5.29e-01 | 99.4% | 97.0% |
| 4p5aC00 | 3.30.1360.170 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › | 0.59 | 57.0 | 5.00e-01 | 100.0% | 97.3% |
| 2af6A01 | 3.30.70.3180 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.57 | 44.0 | 4.91e-01 | 100.0% | 96.2% |
| 5e5nA02 | 1.10.1240.100 | Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › | 0.53 | 23.0 | 2.81e-01 | 77.4% | 60.2% |
| 1iyhB02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.50 | 30.0 | 3.49e-01 | 96.2% | 84.3% |
ECOD (36)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 134624 | 842.1.1.1 ↗ | a+b two layers › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thy1 | 0.80 | 77.0 | 6.44e-01 | 100.0% | 97.6% |
| 5077404 | 842.1.1.1 ↗ | a+b two layers › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thy1 | 0.73 | 69.0 | 5.84e-01 | 98.7% | 98.4% |
| 1007250 | 842.1.1.1 ↗ | a+b two layers › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thy1 | 0.68 | 60.0 | 5.48e-01 | 91.2% | 100.0% |
| 4152367 | 842.1.1.1 ↗ | a+b two layers › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thy1 | 0.68 | 65.0 | 4.99e-01 | 98.7% | 99.4% |
| 4982008 | 842.1.1.1 ↗ | a+b two layers › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thy1 | 0.66 | 61.0 | 5.54e-01 | 95.0% | 99.0% |
| 5066566 | 842.1.1.1 ↗ | a+b two layers › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thy1 | 0.66 | 62.0 | 5.47e-01 | 98.1% | 99.5% |
| 4133204 | 842.1.1.1 ↗ | a+b two layers › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thy1 | 0.66 | 62.0 | 5.28e-01 | 98.1% | 98.8% |
| 4977743 | 842.1.1.1 ↗ | a+b two layers › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thy1 | 0.66 | 61.0 | 5.78e-01 | 96.2% | 98.4% |
| 4134497 | 842.1.1.1 ↗ | a+b two layers › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thy1 | 0.66 | 61.0 | 5.28e-01 | 96.9% | 95.7% |
| 4930760 | 842.1.1.1 ↗ | a+b two layers › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thy1 | 0.65 | 62.0 | 5.06e-01 | 97.5% | 87.3% |
| 4988219 | 842.1.1.1 ↗ | a+b two layers › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thy1 | 0.65 | 59.0 | 4.97e-01 | 94.3% | 100.0% |
| 5029299 | 842.1.1.1 ↗ | a+b two layers › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thy1 | 0.65 | 59.0 | 5.27e-01 | 93.7% | 98.6% |
| 4246528 | 842.1.1.1 ↗ | a+b two layers › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thy1 | 0.65 | 63.0 | 5.26e-01 | 99.4% | 100.0% |
| 5001652 | 842.1.1.1 ↗ | a+b two layers › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thy1 | 0.65 | 61.0 | 5.02e-01 | 97.5% | 89.2% |
| 4102574 | 842.1.1.1 ↗ | a+b two layers › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thy1 | 0.65 | 62.0 | 5.21e-01 | 98.1% | 100.0% |
| 4926808 | 842.1.1.1 ↗ | a+b two layers › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thy1 | 0.65 | 59.0 | 5.23e-01 | 95.6% | 96.4% |
| 4992830 | 842.1.1.1 ↗ | a+b two layers › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thy1 | 0.64 | 61.0 | 5.31e-01 | 98.1% | 96.4% |
| 5046119 | 842.1.1.1 ↗ | a+b two layers › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thy1 | 0.64 | 61.0 | 5.45e-01 | 98.1% | 100.0% |
| 4345249 | 842.1.1.1 ↗ | a+b two layers › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thy1 | 0.64 | 59.0 | 5.13e-01 | 95.6% | 92.9% |
| 4941740 | 842.1.1.1 ↗ | a+b two layers › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thy1 | 0.64 | 61.0 | 4.15e-01 | 99.4% | 44.9% |
| 5024487 | 842.1.1.1 ↗ | a+b two layers › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thy1 | 0.64 | 57.0 | 5.16e-01 | 94.3% | 100.0% |
| 4060791 | 842.1.1.1 ↗ | a+b two layers › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thy1 | 0.63 | 61.0 | 5.06e-01 | 100.0% | 86.3% |
| 4943595 | 842.1.1.1 ↗ | a+b two layers › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thy1 | 0.63 | 61.0 | 5.29e-01 | 100.0% | 98.2% |
| 4628182 | 842.1.1.1 ↗ | a+b two layers › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thy1 | 0.63 | 60.0 | 5.01e-01 | 100.0% | 86.7% |
| 4933142 | 842.1.1.1 ↗ | a+b two layers › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thy1 | 0.63 | 59.0 | 5.16e-01 | 100.0% | 100.0% |
| 5054515 | 842.1.1.0 ↗ | a+b two layers › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 | 0.63 | 60.0 | 5.37e-01 | 100.0% | 99.5% |
| 4292511 | 842.1.1.1 ↗ | a+b two layers › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thy1 | 0.61 | 57.0 | 3.87e-01 | 96.2% | 39.0% |
| 143031 | 842.1.1.1 ↗ | a+b two layers › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thy1 | 0.61 | 58.0 | 5.20e-01 | 98.1% | 100.0% |
| 4300356 | 842.1.1.1 ↗ | a+b two layers › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thy1 | 0.61 | 57.0 | 5.22e-01 | 97.5% | 100.0% |
| 1716752 | 842.1.1.1 ↗ | a+b two layers › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thy1 | 0.60 | 57.0 | 4.99e-01 | 100.0% | 97.3% |
| 3775772 | 5001.1.1.1 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 | 0.55 | 45.0 | 3.70e-01 | 88.1% | 86.8% |
| 3767125 | 5001.1.1.1 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 | 0.55 | 45.0 | 3.58e-01 | 88.1% | 82.4% |
| 3868067 | 5001.1.1.1 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 | 0.55 | 45.0 | 3.65e-01 | 88.7% | 86.3% |
| 4002694 | 5001.1.1.1 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 | 0.51 | 41.0 | 3.32e-01 | 87.4% | 88.7% |
| 3404628 | 5001.1.1.1 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 | 0.50 | 41.0 | 3.28e-01 | 88.1% | 83.8% |
| 3467405 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.50 | 34.0 | 3.63e-01 | 99.4% | 78.6% |
D2
high
residues 117-226_425-478
D3
medium
residues 229-363
Domain cluster:
rep: OR354820.1__WNM50410.1__Alsa1_CDS0060__00060__D21-160
CATH (39)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2dchX01 | 3.10.28.10 | Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases | 0.83 | 52.0 | 6.18e-01 | 74.8% | 91.4% |
| 3hyiA01 | 3.10.28.10 | Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases | 0.82 | 59.0 | 5.20e-01 | 97.0% | 52.4% |
| 1dfaA03 | 3.10.28.10 | Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases | 0.76 | 49.0 | 5.79e-01 | 71.1% | 93.7% |
| 8dy9I01 | 3.10.28.10 | Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases | 0.74 | 64.0 | 5.45e-01 | 90.4% | 92.7% |
| 7qssA01 | 3.10.28.10 | Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases | 0.74 | 69.0 | 6.10e-01 | 99.3% | 71.3% |
| 2cw8A03 | 3.10.28.10 | Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases | 0.71 | 66.0 | 6.04e-01 | 97.8% | 97.6% |
| 3c0wA01 | 3.10.28.10 | Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases | 0.69 | 49.0 | 5.16e-01 | 71.9% | 81.7% |
| 3rrkA03 | 3.30.70.2750 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.64 | 34.0 | 4.43e-01 | 73.3% | 93.2% |
| 5d4nC00 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.63 | 35.0 | 4.08e-01 | 72.6% | 75.5% |
| 7o4xA01 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.62 | 34.0 | 3.93e-01 | 71.9% | 71.7% |
| 1a7gE00 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.62 | 35.0 | 4.31e-01 | 72.6% | 90.2% |
| 2yq1C00 | 3.30.70.390 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Epstein Barr virus nuclear antigen-1, DNA-binding domain | 0.61 | 43.0 | 4.42e-01 | 95.6% | 74.8% |
| 1j4wA01 | 3.30.1370.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 | 0.61 | 34.0 | 4.42e-01 | 72.6% | 100.0% |
| 2hfvA01 | 3.30.70.790 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › UreE, C-terminal domain | 0.59 | 33.0 | 4.23e-01 | 71.9% | 94.8% |
| 3bdeB00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.57 | 36.0 | 4.14e-01 | 73.3% | 86.9% |
| 3ue2A01 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.57 | 35.0 | 4.11e-01 | 71.9% | 92.0% |
| 1lk5A02 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.56 | 32.0 | 4.00e-01 | 73.3% | 94.9% |
| 2jdjA00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.56 | 35.0 | 3.91e-01 | 71.9% | 81.7% |
| 2ia0B02 | 3.30.70.920 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Lrp/AsnC effector binding domain/regulation of amino acid metabolism (RAM) domain | 0.55 | 31.0 | 3.58e-01 | 91.1% | 73.7% |
| 2anrA01 | 3.30.1370.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 | 0.55 | 33.0 | 4.10e-01 | 93.3% | 98.8% |
| 5b08A00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.55 | 37.0 | 4.11e-01 | 71.9% | 90.0% |
| 4dn9B00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.55 | 33.0 | 3.77e-01 | 73.3% | 81.4% |
| 1we8A01 | 3.30.1370.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 | 0.55 | 33.0 | 4.03e-01 | 74.1% | 95.2% |
| 1iujA00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.55 | 34.0 | 3.85e-01 | 72.6% | 82.4% |
| 1v8cA02 | 3.30.1370.80 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › Molybdopterin cofactor biosynthesis MoaD-related, C-terminal domain | 0.55 | 33.0 | 4.05e-01 | 91.1% | 100.0% |
| 5xzqF00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.54 | 36.0 | 4.05e-01 | 73.3% | 87.4% |
| 1tr0A00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.54 | 36.0 | 3.96e-01 | 73.3% | 84.9% |
| 1r6yA00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.54 | 36.0 | 4.00e-01 | 73.3% | 88.3% |
| 3vtiA03 | 3.90.870.40 | Alpha Beta › Alpha-Beta Complex › DHBP synthase › | 0.53 | 34.0 | 3.59e-01 | 79.3% | 71.1% |
| 3bb5A00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.52 | 35.0 | 3.99e-01 | 72.6% | 90.3% |
| 2gysA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 32.0 | 3.77e-01 | 77.8% | 88.4% |
| 2f8mA02 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.52 | 29.0 | 3.58e-01 | 70.4% | 91.1% |
| 3hheA02 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.52 | 30.0 | 3.77e-01 | 70.4% | 98.7% |
| 3bn7A00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.52 | 35.0 | 3.92e-01 | 72.6% | 91.2% |
| 1mwqA00 | 3.30.70.1060 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Dimeric alpha+beta barrel | 0.51 | 33.0 | 3.76e-01 | 91.1% | 88.0% |
| 1rjjA00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.51 | 34.0 | 3.70e-01 | 74.1% | 82.0% |
| 3cwvA01 | 3.30.565.10 | Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain | 0.50 | 44.0 | 3.89e-01 | 95.6% | 92.4% |
| 1sqeA00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.50 | 32.0 | 3.63e-01 | 71.9% | 86.1% |
| 4fvmA02 | 3.30.70.2820 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.50 | 31.0 | 3.50e-01 | 70.4% | 80.6% |
ECOD (53)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4992480 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.82 | 54.0 | 6.54e-01 | 75.6% | 100.0% |
| 3602727 | 242.1.1.7 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 | 0.82 | 54.0 | 6.55e-01 | 74.8% | 100.0% |
| 4993129 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.82 | 71.0 | 7.36e-01 | 90.4% | 100.0% |
| 3603739 | 101.1.1.498 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › LAGLIDADG_3 | 0.81 | 76.0 | 5.59e-01 | 99.3% | 51.4% |
| 4977674 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.81 | 72.0 | 5.98e-01 | 93.3% | 93.2% |
| 4575751 | 242.1.1.7 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 | 0.80 | 50.0 | 6.02e-01 | 75.6% | 93.3% |
| 5013983 | 242.1.1.7 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 | 0.80 | 60.0 | 6.35e-01 | 77.0% | 100.0% |
| 4669668 | 242.1.1.7 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 | 0.80 | 58.0 | 6.67e-01 | 77.0% | 100.0% |
| 4933637 | 242.1.1.7 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 | 0.79 | 57.0 | 6.59e-01 | 80.0% | 100.0% |
| 4941328 | 242.1.1.7 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 | 0.78 | 61.0 | 6.46e-01 | 80.7% | 99.2% |
| 5013026 | 242.1.1.7 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 | 0.78 | 58.0 | 5.31e-01 | 77.0% | 100.0% |
| 4996524 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.77 | 70.0 | 6.13e-01 | 96.3% | 94.4% |
| 4940452 | 242.1.1.7 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 | 0.76 | 59.0 | 6.39e-01 | 80.7% | 100.0% |
| 5028789 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.76 | 50.0 | 6.08e-01 | 71.9% | 100.0% |
| 4943245 | 242.1.1.7 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 | 0.76 | 59.0 | 6.00e-01 | 80.0% | 97.7% |
| 4538250 | 242.1.1.7 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 | 0.76 | 57.0 | 5.71e-01 | 77.0% | 97.8% |
| 4979525 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.76 | 68.0 | 5.95e-01 | 95.6% | 97.4% |
| 4998391 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.76 | 50.0 | 5.95e-01 | 73.3% | 100.0% |
| 5052153 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.75 | 57.0 | 6.13e-01 | 77.8% | 97.4% |
| 4971398 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.75 | 58.0 | 6.41e-01 | 80.0% | 100.0% |
| 4993809 | 242.1.1.7 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 | 0.75 | 54.0 | 6.24e-01 | 77.8% | 100.0% |
| 4978111 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.74 | 59.0 | 5.79e-01 | 83.7% | 95.2% |
| 3950407 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.74 | 48.0 | 5.78e-01 | 75.6% | 98.9% |
| 5012958 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.74 | 52.0 | 5.37e-01 | 72.6% | 99.2% |
| 4039974 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.74 | 53.0 | 5.67e-01 | 73.3% | 94.8% |
| 4993734 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.74 | 70.0 | 5.81e-01 | 100.0% | 95.5% |
| 5023543 | 242.1.1.7 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 | 0.73 | 45.0 | 5.14e-01 | 75.6% | 82.0% |
| 4998402 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.73 | 51.0 | 5.97e-01 | 74.8% | 100.0% |
| 4160031 | 242.1.1.5 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › WhiA_N | 0.73 | 52.0 | 5.62e-01 | 73.3% | 89.6% |
| 3603235 | 242.1.1.2 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_2 | 0.73 | 51.0 | 5.84e-01 | 72.6% | 98.0% |
| 5027606 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.72 | 50.0 | 5.18e-01 | 70.4% | 84.8% |
| 4128067 | 242.1.1.5 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › WhiA_N | 0.72 | 51.0 | 5.56e-01 | 72.6% | 88.2% |
| 4096306 | 242.1.1.5 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › WhiA_N | 0.71 | 50.0 | 5.45e-01 | 72.6% | 88.7% |
| 4681936 | 242.1.1.5 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › WhiA_N | 0.71 | 53.0 | 5.73e-01 | 80.0% | 90.4% |
| 3949585 | 242.1.1.7 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 | 0.71 | 48.0 | 5.23e-01 | 75.6% | 81.7% |
| 4946210 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.70 | 50.0 | 5.45e-01 | 77.0% | 89.1% |
| 4205746 | 242.1.1.5 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › WhiA_N | 0.70 | 47.0 | 5.22e-01 | 71.9% | 86.7% |
| 4389430 | 242.1.1.5 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › WhiA_N | 0.69 | 48.0 | 5.31e-01 | 71.9% | 88.2% |
| 4978103 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.68 | 51.0 | 4.97e-01 | 78.5% | 83.3% |
| 4993810 | 242.1.1.7 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 | 0.68 | 49.0 | 5.22e-01 | 77.0% | 84.2% |
| 4993856 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.67 | 47.0 | 5.23e-01 | 77.0% | 91.4% |
| 4937614 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.67 | 54.0 | 5.31e-01 | 97.8% | 80.0% |
| 5052597 | 242.1.1.7 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 | 0.66 | 48.0 | 4.82e-01 | 76.3% | 72.9% |
| 5016148 | 304.126.1.0 ↗ | a+b two layers › Alpha-beta plaits › ferredoxin-like domain in vacuolar ATP synthase subunit C › ferredoxin-like domain in vacuolar ATP synthase subunit C | 0.61 | 34.0 | 4.02e-01 | 74.1% | 77.9% |
| 3173903 | 304.9.1.1 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 | 0.58 | 35.0 | 3.85e-01 | 74.1% | 73.6% |
| 3476693 | 304.9.1.0 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD | 0.57 | 36.0 | 4.02e-01 | 74.1% | 81.0% |
| 3195383 | 304.28.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain | 0.57 | 37.0 | 4.01e-01 | 71.9% | 80.0% |
| 3594724 | 304.9.1.0 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD | 0.54 | 32.0 | 3.67e-01 | 72.6% | 81.1% |
| 3233980 | 304.9.1.1 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 | 0.54 | 33.0 | 3.80e-01 | 72.6% | 87.8% |
| 3728542 | 306.5.1.0 ↗ | a+b two layers › Glucose permease domain IIB-like › GTP cyclohydrolase I feedback regulatory protein, GFRP › GTP cyclohydrolase I feedback regulatory protein, GFRP | 0.53 | 39.0 | 4.29e-01 | 80.0% | 95.4% |
| 3367463 | 304.4.1.14 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › Dabb | 0.53 | 35.0 | 3.79e-01 | 72.6% | 81.8% |
| 3211652 | 304.9.1.42 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRP7 | 0.52 | 38.0 | 3.39e-01 | 79.3% | 51.5% |
| 3163591 | 304.13.1.1 ↗ | a+b two layers › Alpha-beta plaits › Hypothetical protein VC0424 › Hypothetical protein VC0424 › RraB | 0.51 | 38.0 | 3.97e-01 | 78.5% | 86.2% |
D4
medium
residues 364-422
Domain cluster:
representative
CATH (41)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 7qssA01 | 3.10.28.10 | Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases | 0.85 | 64.0 | 4.35e-01 | 100.0% | 25.0% |
| 2vs7A02 | 3.10.28.10 | Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases | 0.83 | 59.0 | 5.35e-01 | 100.0% | 56.4% |
| 2dchX01 | 3.10.28.10 | Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases | 0.81 | 57.0 | 4.88e-01 | 100.0% | 47.3% |
| 1dq3A04 | 3.10.28.10 | Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases | 0.77 | 56.0 | 4.51e-01 | 100.0% | 40.4% |
| 4e98C00 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.72 | 63.0 | 5.11e-01 | 100.0% | 53.3% |
| 2zomA00 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.71 | 62.0 | 5.00e-01 | 100.0% | 52.3% |
| 4iyqA00 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.69 | 60.0 | 4.89e-01 | 100.0% | 52.3% |
| 4y6iA00 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.69 | 59.0 | 4.88e-01 | 100.0% | 54.4% |
| 2nuhA00 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.68 | 59.0 | 4.87e-01 | 100.0% | 53.8% |
| 3ahpA00 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.68 | 61.0 | 4.96e-01 | 100.0% | 54.7% |
| 2dchX02 | 3.10.28.10 | Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases | 0.66 | 55.0 | 4.38e-01 | 100.0% | 47.7% |
| 1lk5A02 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.66 | 54.0 | 4.90e-01 | 100.0% | 67.1% |
| 1l3iA00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.63 | 57.0 | 3.97e-01 | 100.0% | 44.9% |
| 3hz7A00 | 3.30.110.40 | Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › TusA-like domain | 0.63 | 58.0 | 5.36e-01 | 100.0% | 94.5% |
| 1dq3A03 | 3.10.28.10 | Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases | 0.63 | 52.0 | 4.56e-01 | 100.0% | 62.1% |
| 3e05B00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.63 | 56.0 | 3.87e-01 | 100.0% | 80.7% |
| 2yxdA00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.62 | 55.0 | 3.92e-01 | 100.0% | 83.2% |
| 6qdws00 | 3.90.470.10 | Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › Ribosomal protein L22/L17 | 0.62 | 53.0 | 4.38e-01 | 98.3% | 94.5% |
| 2xzmJ00 | 3.30.70.600 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 | 0.61 | 53.0 | 4.42e-01 | 100.0% | 68.6% |
| 1yfsA01 | 3.30.930.10 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 | 0.60 | 53.0 | 3.55e-01 | 100.0% | 66.5% |
| 1vq8R00 | 3.90.470.10 | Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › Ribosomal protein L22/L17 | 0.60 | 51.0 | 3.87e-01 | 98.3% | 88.0% |
| 6tmfM00 | 3.30.70.600 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 | 0.60 | 52.0 | 4.39e-01 | 100.0% | 69.6% |
| 4iw7A01 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.60 | 54.0 | 4.27e-01 | 100.0% | 53.0% |
| 4v19W00 | 3.90.470.10 | Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › Ribosomal protein L22/L17 | 0.59 | 51.0 | 3.75e-01 | 100.0% | 73.5% |
| 5xyiU00 | 3.30.70.600 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 | 0.58 | 50.0 | 4.32e-01 | 100.0% | 70.1% |
| 3j7yU00 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.57 | 49.0 | 4.08e-01 | 100.0% | 55.9% |
| 4zahA02 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.57 | 50.0 | 3.92e-01 | 100.0% | 74.0% |
| 3qwuA03 | 3.30.70.2160 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.56 | 47.0 | 3.67e-01 | 100.0% | 43.2% |
| 3hm2A00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.55 | 48.0 | 3.51e-01 | 100.0% | 46.2% |
| 1vwxP00 | 3.90.470.10 | Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › Ribosomal protein L22/L17 | 0.55 | 43.0 | 3.23e-01 | 88.1% | 84.3% |
| 1yb3A00 | 3.30.930.10 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 | 0.54 | 42.0 | 3.13e-01 | 86.4% | 30.9% |
| 6dgiA03 | 3.30.1490.20 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain | 0.54 | 46.0 | 4.41e-01 | 96.6% | 98.5% |
| 5x8tT00 | 3.90.470.10 | Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › Ribosomal protein L22/L17 | 0.53 | 46.0 | 3.51e-01 | 100.0% | 75.0% |
| 1ju2A02 | 3.30.410.40 | Alpha Beta › 2-Layer Sandwich › Cholesterol Oxidase; domain 2 › | 0.53 | 39.0 | 2.92e-01 | 84.7% | 66.3% |
| 3pfeA02 | 3.30.70.360 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.53 | 46.0 | 3.62e-01 | 100.0% | 69.2% |
| 2d1cA02 | 3.30.70.1570 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.53 | 44.0 | 3.72e-01 | 100.0% | 54.1% |
| 1rvkA01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.52 | 39.0 | 3.16e-01 | 81.4% | 50.9% |
| 1a9xA04 | 1.10.1030.10 | Mainly Alpha › Orthogonal Bundle › Carbamoyl Phosphate Synthetase; Chain A, domain 4 › Carbamoyl-phosphate synthetase, large subunit oligomerisation domain | 0.52 | 37.0 | 2.85e-01 | 78.0% | 48.0% |
| 1nbwA02 | 3.90.470.30 | Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › Coenzyme B12-Dependent Enzyme linker domain | 0.51 | 41.0 | 3.28e-01 | 98.3% | 90.9% |
| 5dm6H00 | 2.40.150.20 | Mainly Beta › Beta Barrel › Ribosomal Protein L14 › Ribosomal protein L14/L23 | 0.50 | 39.0 | 3.08e-01 | 86.4% | 72.4% |
| 2ii3A01 | 3.30.559.10 | Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain | 0.50 | 41.0 | 2.88e-01 | 98.3% | 77.2% |
ECOD (92)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4950411 | 242.1.1.7 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 | 0.91 | 84.0 | 6.93e-01 | 100.0% | 61.0% |
| 4993130 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.87 | 62.0 | 5.69e-01 | 100.0% | 58.7% |
| 5013813 | 242.1.1.7 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 | 0.84 | 77.0 | 5.59e-01 | 100.0% | 44.0% |
| 3602142 | 242.1.1.7 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 | 0.84 | 63.0 | 5.14e-01 | 100.0% | 44.8% |
| 4993382 | 242.1.1.7 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 | 0.82 | 75.0 | 6.29e-01 | 100.0% | 63.2% |
| 4993856 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.78 | 66.0 | 5.31e-01 | 100.0% | 50.5% |
| 3955114 | 242.1.1.7 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 | 0.78 | 70.0 | 5.32e-01 | 100.0% | 47.4% |
| 5027606 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.77 | 69.0 | 5.38e-01 | 100.0% | 50.4% |
| 4946210 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.77 | 66.0 | 5.30e-01 | 100.0% | 50.0% |
| 5035479 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.76 | 68.0 | 5.86e-01 | 100.0% | 64.4% |
| 4934172 | 242.1.1.7 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 | 0.76 | 61.0 | 5.77e-01 | 100.0% | 72.9% |
| 3603293 | 242.1.1.7 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 | 0.76 | 67.0 | 5.36e-01 | 100.0% | 50.4% |
| 4999899 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.76 | 68.0 | 5.32e-01 | 100.0% | 50.4% |
| 4997602 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.74 | 67.0 | 5.49e-01 | 100.0% | 61.0% |
| 3952678 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.74 | 68.0 | 5.84e-01 | 100.0% | 66.7% |
| 5031636 | 242.1.1.7 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 | 0.73 | 67.0 | 5.19e-01 | 100.0% | 49.2% |
| 3509491 | 304.5.1.3 ↗ | a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › CutA1 | 0.72 | 62.0 | 5.00e-01 | 100.0% | 50.9% |
| 5066391 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.72 | 65.0 | 4.84e-01 | 100.0% | 47.9% |
| 4994374 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.71 | 65.0 | 5.08e-01 | 100.0% | 50.0% |
| 3603119 | 242.1.1.7 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 | 0.71 | 65.0 | 5.07e-01 | 100.0% | 49.2% |
| 3603683 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.71 | 64.0 | 4.74e-01 | 100.0% | 42.8% |
| 4933369 | 242.1.1.7 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 | 0.71 | 64.0 | 4.89e-01 | 100.0% | 49.2% |
| 3950275 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.71 | 59.0 | 5.18e-01 | 100.0% | 62.4% |
| 5030848 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.69 | 62.0 | 4.59e-01 | 100.0% | 45.5% |
| 3175196 | 304.126.1.0 ↗ | a+b two layers › Alpha-beta plaits › ferredoxin-like domain in vacuolar ATP synthase subunit C › ferredoxin-like domain in vacuolar ATP synthase subunit C | 0.69 | 63.0 | 3.71e-01 | 100.0% | 14.3% |
| 5031916 | 242.1.1.7 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 | 0.67 | 61.0 | 4.71e-01 | 100.0% | 52.0% |
| 3963977 | 304.162.1.0 ↗ | a+b two layers › Alpha-beta plaits › Competence or damage-inducible protein CinA middle domain › Competence or damage-inducible protein CinA middle domain | 0.66 | 54.0 | 4.91e-01 | 100.0% | 65.9% |
| 4260992 | 2003.1.5.179 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › PF30636 | 0.66 | 60.0 | 4.11e-01 | 100.0% | 43.7% |
| 4541172 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.65 | 58.0 | 4.50e-01 | 100.0% | 56.9% |
| 3971017 | 304.133.1.1 ↗ | a+b two layers › Alpha-beta plaits › 26 kDa periplasmic immunogenic protein › 26 kDa periplasmic immunogenic protein › SIMPL | 0.65 | 58.0 | 4.73e-01 | 100.0% | 63.6% |
| 4451470 | 304.126.1.1 ↗ | a+b two layers › Alpha-beta plaits › ferredoxin-like domain in vacuolar ATP synthase subunit C › ferredoxin-like domain in vacuolar ATP synthase subunit C › V_ATPase_I | 0.65 | 54.0 | 4.19e-01 | 100.0% | 42.3% |
| 9346 | 2003.1.5.179 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › PF30636 | 0.63 | 57.0 | 3.97e-01 | 100.0% | 44.6% |
| 4986411 | 2003.1.5.179 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › PF30636 | 0.63 | 56.0 | 3.87e-01 | 100.0% | 76.8% |
| None | — | 0.63 | 57.0 | 3.95e-01 | 100.0% | 44.9% | |
| 4935587 | 2003.1.5.179 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › PF30636 | 0.63 | 56.0 | 4.07e-01 | 100.0% | 90.0% |
| 4938781 | 2003.1.5.179 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › PF30636 | 0.63 | 55.0 | 4.01e-01 | 100.0% | 88.5% |
| 4024919 | 304.12.1.1 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal protein S6 › Ribosomal protein S6 › Ribosomal_S6 | 0.62 | 55.0 | 4.34e-01 | 98.3% | 57.5% |
| 1903993 | 2003.1.5.179 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › PF30636 | 0.62 | 55.0 | 3.92e-01 | 100.0% | 82.8% |
| None | — | 0.62 | 55.0 | 3.88e-01 | 100.0% | 44.3% | |
| 3740450 | 328.1.1.3 ↗ | a+b two layers › IF3-like › AlbA-like › AlbA-like › Rpp20 | 0.62 | 55.0 | 4.82e-01 | 100.0% | 70.0% |
| None | — | 0.62 | 56.0 | 3.93e-01 | 100.0% | 80.6% | |
| 5004023 | 2003.1.5.179 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › PF30636 | 0.62 | 55.0 | 3.89e-01 | 100.0% | 84.4% |
| 4106530 | 218.2.1.1 ↗ | a+b two layers › Enolase-N/ribosomal protein › Ribosomal protein L22 › Ribosomal protein L22 › Ribosomal_L22 | 0.62 | 54.0 | 4.35e-01 | 98.3% | 90.4% |
| 3417210 | 304.126.1.1 ↗ | a+b two layers › Alpha-beta plaits › ferredoxin-like domain in vacuolar ATP synthase subunit C › ferredoxin-like domain in vacuolar ATP synthase subunit C › V_ATPase_I | 0.62 | 53.0 | 4.64e-01 | 100.0% | 64.4% |
| 3939269 | 4956.1.1.0 ↗ | a+b two layers › ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit | 0.62 | 54.0 | 4.65e-01 | 100.0% | 74.7% |
| 4931813 | 2003.1.5.179 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › PF30636 | 0.61 | 54.0 | 3.92e-01 | 100.0% | 89.1% |
| 4621720 | 218.2.1.1 ↗ | a+b two layers › Enolase-N/ribosomal protein › Ribosomal protein L22 › Ribosomal protein L22 › Ribosomal_L22 | 0.61 | 53.0 | 4.13e-01 | 98.3% | 79.2% |
| 4336917 | 2003.1.5.179 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › PF30636 | 0.61 | 55.0 | 3.77e-01 | 100.0% | 42.6% |
| 4485740 | 218.2.1.1 ↗ | a+b two layers › Enolase-N/ribosomal protein › Ribosomal protein L22 › Ribosomal protein L22 › Ribosomal_L22 | 0.61 | 54.0 | 4.41e-01 | 100.0% | 93.6% |
| 4286671 | 218.2.1.1 ↗ | a+b two layers › Enolase-N/ribosomal protein › Ribosomal protein L22 › Ribosomal protein L22 › Ribosomal_L22 | 0.61 | 53.0 | 3.72e-01 | 98.3% | 56.3% |
| 3385070 | 218.2.1.1 ↗ | a+b two layers › Enolase-N/ribosomal protein › Ribosomal protein L22 › Ribosomal protein L22 › Ribosomal_L22 | 0.61 | 53.0 | 3.83e-01 | 98.3% | 62.4% |
| 4312627 | 218.2.1.1 ↗ | a+b two layers › Enolase-N/ribosomal protein › Ribosomal protein L22 › Ribosomal protein L22 › Ribosomal_L22 | 0.61 | 52.0 | 3.88e-01 | 98.3% | 86.3% |
| 4136545 | 218.2.1.1 ↗ | a+b two layers › Enolase-N/ribosomal protein › Ribosomal protein L22 › Ribosomal protein L22 › Ribosomal_L22 | 0.61 | 52.0 | 4.09e-01 | 98.3% | 79.7% |
| 4659164 | 218.2.1.1 ↗ | a+b two layers › Enolase-N/ribosomal protein › Ribosomal protein L22 › Ribosomal protein L22 › Ribosomal_L22 | 0.61 | 52.0 | 4.08e-01 | 98.3% | 79.2% |
| 3968212 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.61 | 50.0 | 4.16e-01 | 100.0% | 51.4% |
| 4261557 | 218.2.1.1 ↗ | a+b two layers › Enolase-N/ribosomal protein › Ribosomal protein L22 › Ribosomal protein L22 › Ribosomal_L22 | 0.60 | 52.0 | 3.76e-01 | 98.3% | 78.2% |
| 4329915 | 218.2.1.1 ↗ | a+b two layers › Enolase-N/ribosomal protein › Ribosomal protein L22 › Ribosomal protein L22 › Ribosomal_L22 | 0.60 | 52.0 | 4.10e-01 | 98.3% | 83.2% |
| 4982996 | 218.2.1.1 ↗ | a+b two layers › Enolase-N/ribosomal protein › Ribosomal protein L22 › Ribosomal protein L22 › Ribosomal_L22 | 0.60 | 52.0 | 3.88e-01 | 98.3% | 88.0% |
| 4057698 | 218.2.1.1 ↗ | a+b two layers › Enolase-N/ribosomal protein › Ribosomal protein L22 › Ribosomal protein L22 › Ribosomal_L22 | 0.60 | 53.0 | 4.10e-01 | 100.0% | 83.8% |
| 4602130 | 218.2.1.1 ↗ | a+b two layers › Enolase-N/ribosomal protein › Ribosomal protein L22 › Ribosomal protein L22 › Ribosomal_L22 | 0.60 | 53.0 | 3.95e-01 | 100.0% | 69.6% |
| 3962454 | 218.2.1.0 ↗ | a+b two layers › Enolase-N/ribosomal protein › Ribosomal protein L22 › Ribosomal protein L22 | 0.60 | 52.0 | 3.95e-01 | 98.3% | 73.6% |
| 4067216 | 218.2.1.1 ↗ | a+b two layers › Enolase-N/ribosomal protein › Ribosomal protein L22 › Ribosomal protein L22 › Ribosomal_L22 | 0.60 | 53.0 | 4.31e-01 | 100.0% | 93.6% |
| 4113588 | 218.2.1.1 ↗ | a+b two layers › Enolase-N/ribosomal protein › Ribosomal protein L22 › Ribosomal protein L22 › Ribosomal_L22 | 0.60 | 52.0 | 4.08e-01 | 98.3% | 79.2% |
| 3270055 | 218.2.1.1 ↗ | a+b two layers › Enolase-N/ribosomal protein › Ribosomal protein L22 › Ribosomal protein L22 › Ribosomal_L22 | 0.59 | 50.0 | 3.88e-01 | 98.3% | 73.6% |
| 3475570 | 218.2.1.1 ↗ | a+b two layers › Enolase-N/ribosomal protein › Ribosomal protein L22 › Ribosomal protein L22 › Ribosomal_L22 | 0.59 | 51.0 | 3.89e-01 | 100.0% | 89.0% |
| 4516444 | 218.2.1.1 ↗ | a+b two layers › Enolase-N/ribosomal protein › Ribosomal protein L22 › Ribosomal protein L22 › Ribosomal_L22 | 0.59 | 52.0 | 4.08e-01 | 100.0% | 83.2% |
| 1125237 | 218.2.1.1 ↗ | a+b two layers › Enolase-N/ribosomal protein › Ribosomal protein L22 › Ribosomal protein L22 › Ribosomal_L22 | 0.59 | 51.0 | 4.22e-01 | 100.0% | 94.5% |
| 2755609 | 218.2.1.1 ↗ | a+b two layers › Enolase-N/ribosomal protein › Ribosomal protein L22 › Ribosomal protein L22 › Ribosomal_L22 | 0.59 | 51.0 | 3.73e-01 | 100.0% | 73.5% |
| 3591944 | 218.2.1.1 ↗ | a+b two layers › Enolase-N/ribosomal protein › Ribosomal protein L22 › Ribosomal protein L22 › Ribosomal_L22 | 0.58 | 51.0 | 3.87e-01 | 100.0% | 70.8% |
| 3604793 | 304.109.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal proteins S24e, L23 and L15e › Ribosomal proteins S24e, L23 and L15e | 0.58 | 51.0 | 3.83e-01 | 100.0% | 41.3% |
| 4809499 | 304.109.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal proteins S24e, L23 and L15e › Ribosomal proteins S24e, L23 and L15e | 0.58 | 51.0 | 4.55e-01 | 100.0% | 72.9% |
| 4928076 | 310.3.1.0 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related | 0.58 | 50.0 | 4.52e-01 | 100.0% | 75.9% |
| 4945451 | 304.25.1.11 ↗ | a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain › Peptidase_M20 | 0.58 | 52.0 | 4.15e-01 | 100.0% | 63.5% |
| 4808078 | 304.109.1.1 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal proteins S24e, L23 and L15e › Ribosomal proteins S24e, L23 and L15e › Ribosomal_L23 | 0.57 | 49.0 | 4.59e-01 | 98.3% | 80.0% |
| 5044328 | 304.109.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal proteins S24e, L23 and L15e › Ribosomal proteins S24e, L23 and L15e | 0.57 | 48.0 | 3.29e-01 | 100.0% | 40.9% |
| 3738615 | 304.109.1.1 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal proteins S24e, L23 and L15e › Ribosomal proteins S24e, L23 and L15e › Ribosomal_L23 | 0.57 | 48.0 | 3.98e-01 | 100.0% | 53.0% |
| 3417226 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.56 | 49.0 | 4.04e-01 | 100.0% | 57.3% |
| 4929310 | 304.133.1.1 ↗ | a+b two layers › Alpha-beta plaits › 26 kDa periplasmic immunogenic protein › 26 kDa periplasmic immunogenic protein › SIMPL | 0.56 | 46.0 | 3.90e-01 | 98.3% | 60.9% |
| 3947646 | 304.17.1.1 ↗ | a+b two layers › Alpha-beta plaits › N-utilization substance G protein NusG, N-terminal domain › N-utilization substance G protein NusG, N-terminal domain › NusG | 0.56 | 48.0 | 3.87e-01 | 100.0% | 50.9% |
| 3950094 | 323.1.1.0 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases | 0.55 | 49.0 | 3.11e-01 | 100.0% | 59.9% |
| 3025136 | 218.2.1.1 ↗ | a+b two layers › Enolase-N/ribosomal protein › Ribosomal protein L22 › Ribosomal protein L22 › Ribosomal_L22 | 0.55 | 44.0 | 3.29e-01 | 89.8% | 84.5% |
| 4026133 | 2003.1.5.82 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_31 | 0.55 | 46.0 | 3.22e-01 | 100.0% | 43.0% |
| 4636411 | 323.1.1.1 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › 2-oxoacid_dh | 0.55 | 49.0 | 3.19e-01 | 100.0% | 70.8% |
| 3169357 | 331.4.1.0 ↗ | a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 | 0.55 | 48.0 | 3.93e-01 | 100.0% | 66.4% |
| 3744410 | 218.2.1.1 ↗ | a+b two layers › Enolase-N/ribosomal protein › Ribosomal protein L22 › Ribosomal protein L22 › Ribosomal_L22 | 0.54 | 42.0 | 3.14e-01 | 86.4% | 66.0% |
| 4013634 | 218.2.1.0 ↗ | a+b two layers › Enolase-N/ribosomal protein › Ribosomal protein L22 › Ribosomal protein L22 | 0.54 | 43.0 | 3.06e-01 | 88.1% | 70.7% |
| 4644910 | 218.2.1.1 ↗ | a+b two layers › Enolase-N/ribosomal protein › Ribosomal protein L22 › Ribosomal protein L22 › Ribosomal_L22 | 0.54 | 47.0 | 3.77e-01 | 100.0% | 91.7% |
| 4994537 | 218.2.1.1 ↗ | a+b two layers › Enolase-N/ribosomal protein › Ribosomal protein L22 › Ribosomal protein L22 › Ribosomal_L22 | 0.54 | 43.0 | 3.05e-01 | 88.1% | 71.1% |
| 4210343 | 218.2.1.1 ↗ | a+b two layers › Enolase-N/ribosomal protein › Ribosomal protein L22 › Ribosomal protein L22 › Ribosomal_L22 | 0.53 | 46.0 | 3.75e-01 | 98.3% | 100.0% |
| 4096605 | 323.1.1.0 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases | 0.52 | 41.0 | 2.79e-01 | 91.5% | 71.3% |
| 3340998 | 323.1.1.1 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › 2-oxoacid_dh | 0.52 | 43.0 | 3.00e-01 | 100.0% | 70.6% |
| 3991715 | 218.2.1.1 ↗ | a+b two layers › Enolase-N/ribosomal protein › Ribosomal protein L22 › Ribosomal protein L22 › Ribosomal_L22 | 0.50 | 43.0 | 3.11e-01 | 100.0% | 69.8% |
D5
medium
residues 505-589
Domain cluster:
representative
CATH (6)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4nv0A02 | 1.10.150.340 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Pyrimidine 5'-nucleotidase (UMPH-1), N-terminal domain | 0.62 | 40.0 | 4.09e-01 | 95.3% | 67.1% |
| 3p42A02 | 6.10.250.2280 | Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.60 | 38.0 | 4.17e-01 | 85.9% | 78.6% |
| 2klqA00 | 1.20.58.870 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.59 | 40.0 | 3.64e-01 | 87.1% | 52.6% |
| 1qkrB00 | 1.20.120.230 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like | 0.52 | 39.0 | 3.16e-01 | 81.2% | 84.4% |
| 1chuA03 | 1.20.58.100 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal domain | 0.52 | 37.0 | 3.71e-01 | 96.5% | 71.6% |
| 2hgsA01 | 3.30.1490.80 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › | 0.51 | 39.0 | 3.92e-01 | 94.1% | 80.5% |
ECOD (5)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3667109 | 101.1.2.111 ↗ | alpha arrays › HTH › HTH › winged helix domain › RQC | 0.58 | 39.0 | 3.44e-01 | 83.5% | 47.2% |
| 3796165 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.55 | 48.0 | 2.89e-01 | 100.0% | 31.8% |
| 3284380 | 304.128.1.0 ↗ | a+b two layers › Alpha-beta plaits › ferredoxin-like domain in periplasmic region of MacB › ferredoxin-like domain in periplasmic region of MacB | 0.52 | 34.0 | 3.67e-01 | 92.9% | 81.4% |
| 4189566 | 3016.1.1.0 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases | 0.51 | 34.0 | 3.56e-01 | 81.2% | 77.0% |
| 3038844 | 2002.1.1.0 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels | 0.50 | 39.0 | 2.65e-01 | 82.4% | 55.7% |