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SR-VP_4-6_scaffold_141_559231_prodigal-single.1__X__X__00119
Bact-VirSR-VP_4-6_scaffold_141_559231_prodigal-single.1__X__X__00119
Identity
- Kingdom:
- phage
Quality
81.7
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 3-36
Domain cluster:
representative
D2
medium
residues 44-79
Domain cluster:
representative
CATH (13)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2pw4A00 | 1.10.3300.10 | Mainly Alpha › Orthogonal Bundle › Jann2411-like fold › Jann2411-like domain | 0.77 | 62.0 | 4.03e-01 | 100.0% | 21.9% |
| 1vx7000 | 2.30.170.20 | Mainly Beta › Roll › Ribosomal Protein L24e; Chain: T; › Ribosomal protein L24 | 0.72 | 55.0 | 4.70e-01 | 88.9% | 66.1% |
| 4n81A01 | 3.30.540.10 | Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › Fructose-1,6-Bisphosphatase, subunit A, domain 1 | 0.67 | 42.0 | 2.82e-01 | 75.0% | 16.2% |
| 2od1A00 | 6.10.140.2220 | Special › Helix non-globular › Helix Hairpins › | 0.63 | 53.0 | 4.83e-01 | 97.2% | 74.0% |
| 2k0mA00 | 3.10.450.40 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.61 | 45.0 | 3.31e-01 | 88.9% | 28.8% |
| 2oviA00 | 3.40.1570.10 | Alpha Beta › 3-Layer(aba) Sandwich › Heme iron utilization protein-like fold › HemS/ChuS/ChuX like domains | 0.60 | 48.0 | 3.13e-01 | 88.9% | 68.4% |
| 3abzA01 | 3.20.20.300 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycoside hydrolase, family 3, N-terminal domain | 0.60 | 50.0 | 2.87e-01 | 94.4% | 14.2% |
| 1hc7A01 | 3.30.930.10 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 | 0.59 | 53.0 | 3.11e-01 | 100.0% | 20.1% |
| 2e67A00 | 3.20.20.370 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycoside hydrolase/deacetylase | 0.58 | 50.0 | 3.00e-01 | 100.0% | 21.3% |
| 3n2xA00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.55 | 45.0 | 2.63e-01 | 91.7% | 15.1% |
| 4h0nA01 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.53 | 47.0 | 2.92e-01 | 100.0% | 32.0% |
| 1h8lA01 | 3.40.630.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases | 0.52 | 39.0 | 2.39e-01 | 91.7% | 11.6% |
| 2d5wA03 | 3.10.105.10 | Alpha Beta › Roll › Dipeptide-binding Protein; domain 3 › Dipeptide-binding Protein; Domain 3 | 0.51 | 44.0 | 2.68e-01 | 100.0% | 24.2% |
ECOD (24)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3187485 | 931.1.1.12 ↗ | few secondary structure elements › Metallothionein › Metallothionein › Metallothionein › Ecl1 | 0.93 | 68.0 | 7.37e-01 | 77.8% | 100.0% |
| 4954542 | 377.1.1.0 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like | 0.87 | 71.0 | 7.22e-01 | 94.4% | 97.1% |
| 3209169 | 375.1.1.274 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Ecl1 | 0.81 | 59.0 | 6.22e-01 | 80.6% | 96.7% |
| 4314985 | 377.1.1.15 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › YacG | 0.78 | 66.0 | 6.33e-01 | 100.0% | 88.4% |
| 3408969 | 377.9.1.8 ↗ | few secondary structure elements › Glucocorticoid receptor-like › HIT/MYND zinc finger-like › HIT/MYND zinc finger-like › zf-FCS | 0.77 | 68.0 | 5.43e-01 | 100.0% | 61.4% |
| 3541 | 4107.1.1.1 ↗ | alpha arrays › Jann2411-like › Jann2411-like › Jann2411-like › ABATE,zf-CGNR | 0.76 | 60.0 | 3.95e-01 | 100.0% | 21.7% |
| 5018523 | 377.1.1.0 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like | 0.76 | 65.0 | 5.31e-01 | 100.0% | 51.4% |
| 3474498 | 906.2.1.0 ↗ | few secondary structure elements › CCCH zinc finger › SSP1 C3H-type zinc finger › SSP1 C3H-type zinc finger | 0.76 | 60.0 | 6.11e-01 | 88.9% | 91.4% |
| 3537307 | 377.1.1.34 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › FAM76 | 0.73 | 57.0 | 4.07e-01 | 88.9% | 38.2% |
| 3418010 | 377.9.1.1 ↗ | few secondary structure elements › Glucocorticoid receptor-like › HIT/MYND zinc finger-like › HIT/MYND zinc finger-like › zf-MYND | 0.70 | 59.0 | 5.73e-01 | 94.4% | 95.0% |
| 4562058 | 377.1.1.31 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › YHS | 0.69 | 54.0 | 5.20e-01 | 94.4% | 95.6% |
| 3700937 | 377.9.1.2 ↗ | few secondary structure elements › Glucocorticoid receptor-like › HIT/MYND zinc finger-like › HIT/MYND zinc finger-like › zf-HIT | 0.69 | 55.0 | 5.40e-01 | 91.7% | 87.5% |
| 3475334 | 377.9.1.1 ↗ | few secondary structure elements › Glucocorticoid receptor-like › HIT/MYND zinc finger-like › HIT/MYND zinc finger-like › zf-MYND | 0.68 | 58.0 | 5.67e-01 | 97.2% | 100.0% |
| 3409921 | 377.9.1.1 ↗ | few secondary structure elements › Glucocorticoid receptor-like › HIT/MYND zinc finger-like › HIT/MYND zinc finger-like › zf-MYND | 0.68 | 55.0 | 4.96e-01 | 91.7% | 68.0% |
| 3921605 | 377.9.1.9 ↗ | few secondary structure elements › Glucocorticoid receptor-like › HIT/MYND zinc finger-like › HIT/MYND zinc finger-like › MYND_ZMYND11_ZMYD8 | 0.67 | 54.0 | 3.78e-01 | 91.7% | 28.7% |
| 3800970 | 377.9.1.0 ↗ | few secondary structure elements › Glucocorticoid receptor-like › HIT/MYND zinc finger-like › HIT/MYND zinc finger-like | 0.67 | 53.0 | 5.21e-01 | 91.7% | 82.5% |
| 3489858 | 377.9.1.9 ↗ | few secondary structure elements › Glucocorticoid receptor-like › HIT/MYND zinc finger-like › HIT/MYND zinc finger-like › MYND_ZMYND11_ZMYD8 | 0.66 | 53.0 | 4.82e-01 | 91.7% | 68.0% |
| 3405764 | 377.9.1.9 ↗ | few secondary structure elements › Glucocorticoid receptor-like › HIT/MYND zinc finger-like › HIT/MYND zinc finger-like › MYND_ZMYND11_ZMYD8 | 0.66 | 53.0 | 5.16e-01 | 91.7% | 82.5% |
| 3205914 | 377.9.1.6 ↗ | few secondary structure elements › Glucocorticoid receptor-like › HIT/MYND zinc finger-like › HIT/MYND zinc finger-like › YL1_C | 0.66 | 55.0 | 4.84e-01 | 97.2% | 67.3% |
| 3781281 | 377.9.1.4 ↗ | few secondary structure elements › Glucocorticoid receptor-like › HIT/MYND zinc finger-like › HIT/MYND zinc finger-like › zf-Mss51 | 0.58 | 50.0 | 4.00e-01 | 100.0% | 58.7% |
| 3606793 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.57 | 48.0 | 3.15e-01 | 100.0% | 91.7% |
| 4535390 | 376.1.1.37 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › SLX1_C | 0.55 | 42.0 | 3.22e-01 | 88.9% | 46.0% |
| 4003121 | 377.1.1.1 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › zf-C4 | 0.54 | 42.0 | 3.91e-01 | 97.2% | 66.7% |
| 3606956 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.51 | 38.0 | 3.58e-01 | 100.0% | 66.7% |