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SR-VP_4-6_scaffold_141_559231_prodigal-single.1__X__X__00582
Bact-VirSR-VP_4-6_scaffold_141_559231_prodigal-single.1__X__X__00582
Identity
- Kingdom:
- phage
Quality
58.0
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 7-168
Domain cluster:
rep: LacPavin_0818_WC40_scaffold_575784_prodigal-single.1__X__X__00523__D5-123
D2
high
residues 576-643
D3
high
residues 1216-1318
Domain cluster:
rep: MN871446.1__UKS71963.1__KpLz245_0970__00097__D488-572
CATH (12)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6o38A02 | 2.60.120.1230 | Mainly Beta › Sandwich › Jelly Rolls › | 0.78 | 64.0 | 6.72e-01 | 99.0% | 96.7% |
| 6o38A01 | 2.60.120.1230 | Mainly Beta › Sandwich › Jelly Rolls › | 0.74 | 61.0 | 6.42e-01 | 100.0% | 98.9% |
| 6o38A03 | 2.60.120.1230 | Mainly Beta › Sandwich › Jelly Rolls › | 0.74 | 57.0 | 6.19e-01 | 95.1% | 100.0% |
| 6o38A04 | 2.60.120.1230 | Mainly Beta › Sandwich › Jelly Rolls › | 0.71 | 55.0 | 5.90e-01 | 100.0% | 95.5% |
| 4dnyA00 | 2.60.120.1230 | Mainly Beta › Sandwich › Jelly Rolls › | 0.68 | 57.0 | 5.64e-01 | 100.0% | 87.2% |
| 2q30A01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.63 | 42.0 | 4.46e-01 | 94.2% | 79.5% |
| 1hf2A02 | 2.160.20.70 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › | 0.58 | 42.0 | 4.24e-01 | 100.0% | 74.5% |
| 3zx1A01 | 2.60.40.420 | Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins | 0.58 | 47.0 | 4.05e-01 | 87.4% | 81.9% |
| 4f7kA01 | 2.60.40.420 | Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins | 0.56 | 42.0 | 3.92e-01 | 77.7% | 76.0% |
| 6syyA01 | 2.60.40.420 | Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins | 0.56 | 44.0 | 4.03e-01 | 85.4% | 75.4% |
| 3g5wA01 | 2.60.40.420 | Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins | 0.53 | 39.0 | 3.50e-01 | 79.6% | 64.5% |
| 1srqC02 | 3.40.50.11210 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Rap/Ran-GAP | 0.53 | 44.0 | 3.65e-01 | 91.3% | 76.6% |
ECOD (13)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2581339 | 520.2.1.1 ↗ | beta sandwiches › gp9 N-terminal domain-like › beta-sandwich domain in metalloprotease stcE › beta-sandwich domain in metalloprotease stcE › StcE_b-sandwich | 0.76 | 62.0 | 6.47e-01 | 100.0% | 95.7% |
| 3942383 | 520.2.1.0 ↗ | beta sandwiches › gp9 N-terminal domain-like › beta-sandwich domain in metalloprotease stcE › beta-sandwich domain in metalloprotease stcE | 0.75 | 59.0 | 6.30e-01 | 100.0% | 95.6% |
| 2581337 | 520.2.1.1 ↗ | beta sandwiches › gp9 N-terminal domain-like › beta-sandwich domain in metalloprotease stcE › beta-sandwich domain in metalloprotease stcE › StcE_b-sandwich | 0.74 | 61.0 | 6.39e-01 | 100.0% | 98.9% |
| 2581340 | 520.2.1.1 ↗ | beta sandwiches › gp9 N-terminal domain-like › beta-sandwich domain in metalloprotease stcE › beta-sandwich domain in metalloprotease stcE › StcE_b-sandwich | 0.71 | 56.0 | 5.98e-01 | 100.0% | 98.9% |
| 2156967 | 207.5.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Cell-division inhibitor MinC-C › Cell-division inhibitor MinC-C › MinC_C | 0.58 | 43.0 | 4.25e-01 | 100.0% | 73.9% |
| 4193774 | 3156.1.1.9 ↗ | beta sandwiches › Cupredoxin-like › Cupredoxin-related › Cupredoxin-related › Cu-oxidase_3 | 0.58 | 44.0 | 3.95e-01 | 79.6% | 80.0% |
| 3300415 | 3156.1.1.9 ↗ | beta sandwiches › Cupredoxin-like › Cupredoxin-related › Cupredoxin-related › Cu-oxidase_3 | 0.56 | 43.0 | 3.90e-01 | 79.6% | 74.1% |
| 5038919 | 3156.1.1.9 ↗ | beta sandwiches › Cupredoxin-like › Cupredoxin-related › Cupredoxin-related › Cu-oxidase_3 | 0.56 | 44.0 | 3.97e-01 | 84.5% | 74.5% |
| 2512595 | 3156.1.1.9 ↗ | beta sandwiches › Cupredoxin-like › Cupredoxin-related › Cupredoxin-related › Cu-oxidase_3 | 0.55 | 41.0 | 3.94e-01 | 79.6% | 74.8% |
| 4253059 | 207.11.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Urease accessory protein ureH › Urease accessory protein ureH › UreD | 0.54 | 47.0 | 3.56e-01 | 100.0% | 60.4% |
| 4183596 | 207.11.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Urease accessory protein ureH › Urease accessory protein ureH › UreD | 0.52 | 45.0 | 3.48e-01 | 100.0% | 61.9% |
| 3400050 | 3156.1.1.9 ↗ | beta sandwiches › Cupredoxin-like › Cupredoxin-related › Cupredoxin-related › Cu-oxidase_3 | 0.51 | 45.0 | 3.80e-01 | 98.1% | 72.2% |
| 3732969 | 3156.1.1.9 ↗ | beta sandwiches › Cupredoxin-like › Cupredoxin-related › Cupredoxin-related › Cu-oxidase_3 | 0.51 | 43.0 | 3.81e-01 | 93.2% | 80.7% |
D4
medium
residues 649-732
D5
medium
residues 753-880
D6
medium
residues 881-994
Domain cluster:
rep: MN871446.1__UKS71963.1__KpLz245_0970__00097__D488-572
D7
medium
residues 1016-1094
Domain cluster:
rep: SR-VP_4-6_scaffold_141_559231_prodigal-single.1__X__X__00582__D1148-1210
D8
medium
residues 1148-1210
Domain cluster:
representative
CATH (10)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6o38A01 | 2.60.120.1230 | Mainly Beta › Sandwich › Jelly Rolls › | 0.77 | 54.0 | 4.81e-01 | 93.7% | 51.1% |
| 2ztbA03 | 2.60.40.3040 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.63 | 42.0 | 4.63e-01 | 100.0% | 91.7% |
| 1gxyA00 | 3.90.176.10 | Alpha Beta › Alpha-Beta Complex › Toxin ADP-ribosyltransferase; Chain A, domain 1 › Toxin ADP-ribosyltransferase; Chain A, domain 1 | 0.58 | 48.0 | 3.46e-01 | 100.0% | 94.2% |
| 4jtmA00 | 3.55.50.30 | Alpha Beta › 3-Layer(bab) Sandwich › Phage tail protein beta-alpha-beta fold › | 0.56 | 42.0 | 3.88e-01 | 79.4% | 86.4% |
| 2bhvB01 | 2.40.128.260 | Mainly Beta › Beta Barrel › Lipocalin › Type IV secretion system, VirB10/TraB/TrbI | 0.56 | 47.0 | 3.60e-01 | 98.4% | 96.9% |
| 4e9jB01 | 3.30.1370.120 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › | 0.53 | 41.0 | 3.27e-01 | 87.3% | 51.4% |
| 1hezE00 | 3.10.20.10 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.52 | 35.0 | 3.57e-01 | 71.4% | 72.1% |
| 1k3rA02 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.51 | 38.0 | 3.92e-01 | 100.0% | 91.5% |
| 6bioA01 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.50 | 35.0 | 3.66e-01 | 98.4% | 84.2% |
| 3amlA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.50 | 36.0 | 3.06e-01 | 90.5% | 43.5% |
ECOD (28)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5028240 | 274.1.1.0 ↗ | a+b two layers › Pili subunits › Pili subunits › Pili subunits | 0.64 | 53.0 | 4.25e-01 | 95.2% | 53.1% |
| 3302541 | 1.1.11.6 ↗ | beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain › PF31239 | 0.63 | 56.0 | 4.61e-01 | 100.0% | 96.5% |
| 3208255 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.60 | 46.0 | 2.56e-01 | 100.0% | 5.8% |
| 4403517 | 325.1.8.6 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Ribosomal L27 protein › ECR1_N_2 | 0.59 | 45.0 | 4.79e-01 | 100.0% | 94.5% |
| 4956417 | 259.1.1.2 ↗ | a+b two layers › Ribosomal protein L31e-like › Ribosomal protein L31e/gp120 outer domain › Ribosomal protein L31e/gp120 outer domain › Ribosomal_L31e | 0.59 | 49.0 | 4.53e-01 | 95.2% | 96.5% |
| 3398924 | 221.1.1.42 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › GABP-alpha | 0.58 | 51.0 | 4.84e-01 | 100.0% | 100.0% |
| 4990537 | 325.1.8.0 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Ribosomal L27 protein | 0.57 | 42.0 | 4.61e-01 | 98.4% | 100.0% |
| 4952387 | 237.1.1.0 ↗ | a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation | 0.57 | 48.0 | 4.01e-01 | 100.0% | 66.4% |
| 3534305 | 237.1.1.2 ↗ | a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › ART | 0.56 | 47.0 | 3.34e-01 | 100.0% | 96.5% |
| 4954547 | 237.1.1.8 ↗ | a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › ADPrib_exo_Tox | 0.56 | 46.0 | 3.34e-01 | 95.2% | 39.0% |
| 4039533 | 3321.1.1.1 ↗ | a+b two layers › Meander beta sheet domain in fatty acid synthase subunit beta › Meander beta sheet domain in fatty acid synthase subunit beta › Meander beta sheet domain in fatty acid synthase subunit beta › FAS_meander | 0.56 | 47.0 | 3.62e-01 | 100.0% | 56.2% |
| 4946967 | 325.1.8.0 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Ribosomal L27 protein | 0.56 | 42.0 | 4.46e-01 | 100.0% | 94.5% |
| 4028533 | 325.1.8.1 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Ribosomal L27 protein › Ribosomal_L27 | 0.55 | 48.0 | 3.93e-01 | 100.0% | 61.7% |
| 4676584 | 325.1.8.0 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Ribosomal L27 protein | 0.55 | 45.0 | 4.48e-01 | 100.0% | 90.8% |
| 3516458 | 325.1.8.0 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Ribosomal L27 protein | 0.54 | 45.0 | 4.60e-01 | 100.0% | 100.0% |
| 4646733 | 1.1.11.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain › B3 | 0.54 | 45.0 | 4.01e-01 | 100.0% | 98.0% |
| 4963795 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.54 | 38.0 | 3.67e-01 | 98.4% | 64.0% |
| 4626477 | 237.1.1.8 ↗ | a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › ADPrib_exo_Tox | 0.54 | 44.0 | 3.32e-01 | 95.2% | 46.5% |
| 3790843 | 325.1.8.2 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Ribosomal L27 protein › ECR1_N | 0.53 | 43.0 | 4.42e-01 | 98.4% | 96.7% |
| 3821526 | 2.5.1.1 ↗ | beta barrels › OB-fold › Inorganic pyrophosphatase › Inorganic pyrophosphatase › Pyrophosphatase | 0.53 | 40.0 | 2.86e-01 | 84.1% | 54.1% |
| 4213490 | 325.1.8.1 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Ribosomal L27 protein › Ribosomal_L27 | 0.52 | 42.0 | 3.98e-01 | 100.0% | 73.8% |
| 2138055 | 325.1.8.0 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Ribosomal L27 protein | 0.52 | 43.0 | 3.98e-01 | 100.0% | 71.4% |
| 3376913 | 2.1.1.28 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › mRNA_cap_C | 0.52 | 45.0 | 3.80e-01 | 100.0% | 58.2% |
| 1866329 | 325.1.8.3 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Ribosomal L27 protein › Rrp40_N | 0.52 | 41.0 | 4.17e-01 | 100.0% | 93.7% |
| 4010008 | 2.25.1.1 ↗ | beta barrels › OB-fold › OB domain in IgaA › OB domain in IgaA › IgaA | 0.51 | 45.0 | 3.82e-01 | 100.0% | 85.7% |
| 3627192 | 11.1.4.71 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › NOMO1-like_7th | 0.51 | 35.0 | 3.44e-01 | 87.3% | 65.7% |
| 4929507 | 325.1.8.2 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Ribosomal L27 protein › ECR1_N | 0.51 | 39.0 | 4.09e-01 | 100.0% | 98.2% |
| 3866115 | 325.1.8.4 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Ribosomal L27 protein › RRP40_N_mamm | 0.50 | 42.0 | 3.87e-01 | 100.0% | 90.0% |
D9
medium
residues 1326-1430
Domain cluster:
rep: MN871446.1__UKS71963.1__KpLz245_0970__00097__D488-572