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SRR1747018_scaffold_0_prodigal-single.1__X__X__00080
Bact-VirSRR1747018_scaffold_0_prodigal-single.1__X__X__00080
Identity
- Kingdom:
- phage
Quality
74.4
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 129-248
Domain cluster:
rep: SRR1747018_scaffold_2_1202_curated_prodigal-single.1__X__X__00178__D463-610
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF03734.20 best | YkuD | 79.1 | 7.30e-22 | 100.0% | 98.0% |
CATH (7)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2mtzA02 | 2.40.440.10 | Mainly Beta › Beta Barrel › L,D-transpeptidase catalytic domain-like › L,D-transpeptidase catalytic domain-like | 0.85 | 72.0 | 7.29e-01 | 100.0% | 89.1% |
| 3tx4A02 | 2.40.440.10 | Mainly Beta › Beta Barrel › L,D-transpeptidase catalytic domain-like › L,D-transpeptidase catalytic domain-like | 0.84 | 81.0 | 7.56e-01 | 100.0% | 87.3% |
| 4z7aA03 | 2.40.440.10 | Mainly Beta › Beta Barrel › L,D-transpeptidase catalytic domain-like › L,D-transpeptidase catalytic domain-like | 0.83 | 76.0 | 7.31e-01 | 100.0% | 87.0% |
| 1zatA02 | 2.40.440.10 | Mainly Beta › Beta Barrel › L,D-transpeptidase catalytic domain-like › L,D-transpeptidase catalytic domain-like | 0.82 | 79.0 | 7.83e-01 | 100.0% | 97.6% |
| 4lpqA02 | 2.40.440.10 | Mainly Beta › Beta Barrel › L,D-transpeptidase catalytic domain-like › L,D-transpeptidase catalytic domain-like | 0.82 | 79.0 | 7.70e-01 | 100.0% | 93.0% |
| 1y9zA02 | 3.50.30.30 | Alpha Beta › 3-Layer(bba) Sandwich › Glucose Oxidase; domain 1 › | 0.57 | 49.0 | 4.67e-01 | 95.0% | 97.9% |
| 3fhwA00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.54 | 31.0 | 3.42e-01 | 75.8% | 69.7% |
ECOD (25)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4410211 | 4091.1.1.1 ↗ | beta complex topology › L,D-transpeptidase catalytic domain-like › L,D-transpeptidase catalytic domain-like › L,D-transpeptidase catalytic domain-like › YkuD | 0.97 | 95.0 | 9.26e-01 | 100.0% | 96.9% |
| 3957156 | 4091.1.1.0 ↗ | beta complex topology › L,D-transpeptidase catalytic domain-like › L,D-transpeptidase catalytic domain-like › L,D-transpeptidase catalytic domain-like | 0.90 | 77.0 | 7.46e-01 | 100.0% | 81.5% |
| 3283151 | 4091.1.1.1 ↗ | beta complex topology › L,D-transpeptidase catalytic domain-like › L,D-transpeptidase catalytic domain-like › L,D-transpeptidase catalytic domain-like › YkuD | 0.89 | 75.0 | 7.86e-01 | 100.0% | 96.3% |
| 3968640 | 4091.1.1.1 ↗ | beta complex topology › L,D-transpeptidase catalytic domain-like › L,D-transpeptidase catalytic domain-like › L,D-transpeptidase catalytic domain-like › YkuD | 0.88 | 77.0 | 7.65e-01 | 100.0% | 87.2% |
| 1558018 | 4091.1.1.1 ↗ | beta complex topology › L,D-transpeptidase catalytic domain-like › L,D-transpeptidase catalytic domain-like › L,D-transpeptidase catalytic domain-like › YkuD | 0.88 | 77.0 | 7.51e-01 | 100.0% | 84.6% |
| 1681707 | 4091.1.1.1 ↗ | beta complex topology › L,D-transpeptidase catalytic domain-like › L,D-transpeptidase catalytic domain-like › L,D-transpeptidase catalytic domain-like › YkuD | 0.86 | 73.0 | 6.86e-01 | 100.0% | 74.5% |
| 1498421 | 4091.1.1.1 ↗ | beta complex topology › L,D-transpeptidase catalytic domain-like › L,D-transpeptidase catalytic domain-like › L,D-transpeptidase catalytic domain-like › YkuD | 0.85 | 76.0 | 7.04e-01 | 100.0% | 76.6% |
| 4302389 | 4091.1.1.1 ↗ | beta complex topology › L,D-transpeptidase catalytic domain-like › L,D-transpeptidase catalytic domain-like › L,D-transpeptidase catalytic domain-like › YkuD | 0.84 | 81.0 | 7.69e-01 | 100.0% | 89.1% |
| 1220824 | 4091.1.1.1 ↗ | beta complex topology › L,D-transpeptidase catalytic domain-like › L,D-transpeptidase catalytic domain-like › L,D-transpeptidase catalytic domain-like › YkuD | 0.84 | 81.0 | 6.96e-01 | 100.0% | 71.3% |
| 3960486 | 4091.1.1.0 ↗ | beta complex topology › L,D-transpeptidase catalytic domain-like › L,D-transpeptidase catalytic domain-like › L,D-transpeptidase catalytic domain-like | 0.84 | 81.0 | 7.39e-01 | 100.0% | 80.0% |
| 3951628 | 4091.1.1.1 ↗ | beta complex topology › L,D-transpeptidase catalytic domain-like › L,D-transpeptidase catalytic domain-like › L,D-transpeptidase catalytic domain-like › YkuD | 0.84 | 81.0 | 7.38e-01 | 100.0% | 94.7% |
| 3964337 | 4091.1.1.1 ↗ | beta complex topology › L,D-transpeptidase catalytic domain-like › L,D-transpeptidase catalytic domain-like › L,D-transpeptidase catalytic domain-like › YkuD | 0.84 | 81.0 | 6.55e-01 | 100.0% | 64.5% |
| 4679621 | 4091.1.1.1 ↗ | beta complex topology › L,D-transpeptidase catalytic domain-like › L,D-transpeptidase catalytic domain-like › L,D-transpeptidase catalytic domain-like › YkuD | 0.82 | 79.0 | 7.55e-01 | 100.0% | 96.3% |
| 1120883 | 4091.1.1.1 ↗ | beta complex topology › L,D-transpeptidase catalytic domain-like › L,D-transpeptidase catalytic domain-like › L,D-transpeptidase catalytic domain-like › YkuD | 0.82 | 79.0 | 7.70e-01 | 100.0% | 93.0% |
| 3969743 | 4091.1.1.1 ↗ | beta complex topology › L,D-transpeptidase catalytic domain-like › L,D-transpeptidase catalytic domain-like › L,D-transpeptidase catalytic domain-like › YkuD | 0.82 | 79.0 | 7.38e-01 | 100.0% | 96.4% |
| None | — | 0.81 | 78.0 | 7.12e-01 | 100.0% | 89.3% | |
| 3974213 | 4091.1.1.0 ↗ | beta complex topology › L,D-transpeptidase catalytic domain-like › L,D-transpeptidase catalytic domain-like › L,D-transpeptidase catalytic domain-like | 0.81 | 78.0 | 7.21e-01 | 100.0% | 92.4% |
| 3981189 | 3743.1.1.0 ↗ | a+b two layers › L,D-transpeptidase C-terminal domain › L,D-transpeptidase C-terminal domain › L,D-transpeptidase C-terminal domain | 0.81 | 78.0 | 6.09e-01 | 100.0% | 59.6% |
| 997880 | 4091.1.1.1 ↗ | beta complex topology › L,D-transpeptidase catalytic domain-like › L,D-transpeptidase catalytic domain-like › L,D-transpeptidase catalytic domain-like › YkuD | 0.80 | 75.0 | 7.36e-01 | 100.0% | 94.6% |
| 3163824 | 4091.1.1.1 ↗ | beta complex topology › L,D-transpeptidase catalytic domain-like › L,D-transpeptidase catalytic domain-like › L,D-transpeptidase catalytic domain-like › YkuD | 0.77 | 72.0 | 5.39e-01 | 100.0% | 70.9% |
| 3958193 | 4091.1.1.0 ↗ | beta complex topology › L,D-transpeptidase catalytic domain-like › L,D-transpeptidase catalytic domain-like › L,D-transpeptidase catalytic domain-like | 0.76 | 71.0 | 6.52e-01 | 97.5% | 92.7% |
| 2819641 | 4091.1.1.1 ↗ | beta complex topology › L,D-transpeptidase catalytic domain-like › L,D-transpeptidase catalytic domain-like › L,D-transpeptidase catalytic domain-like › YkuD | 0.76 | 71.0 | 5.62e-01 | 100.0% | 85.5% |
| 3971742 | 4091.1.1.2 ↗ | beta complex topology › L,D-transpeptidase catalytic domain-like › L,D-transpeptidase catalytic domain-like › L,D-transpeptidase catalytic domain-like › YkuD_2 | 0.74 | 70.0 | 5.74e-01 | 100.0% | 69.5% |
| 3444970 | 2.1.1.223 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF28721 | 0.53 | 34.0 | 3.35e-01 | 95.8% | 58.5% |
| 5011728 | 4210.1.1.0 ↗ | a+b two layers › WGR domain › WGR domain › WGR domain | 0.52 | 26.0 | 2.89e-01 | 100.0% | 57.9% |