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SRR1747018_scaffold_0_prodigal-single.1__X__X__00103
Bact-VirSRR1747018_scaffold_0_prodigal-single.1__X__X__00103
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 13-102
Domain cluster:
rep: MK504444.1__QBJ03634.1__UCC3521_0096__00096__D7-98
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF18291.7 best | HU-HIG | 36.8 | 5.30e-09 | 98.9% | 39.2% |
| PF00216.27 | Bac_DNA_binding | 66.9 | 2.10e-18 | 97.8% | 95.6% |
CATH (12)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2np2A00 | 4.10.520.10 | Few Secondary Structures › Irregular › HU Protein; Chain A › IHF-like DNA-binding proteins | 0.93 | 88.0 | 8.42e-01 | 100.0% | 94.1% |
| 5ekaA00 | 4.10.520.10 | Few Secondary Structures › Irregular › HU Protein; Chain A › IHF-like DNA-binding proteins | 0.90 | 75.0 | 7.77e-01 | 98.9% | 91.8% |
| 4pt4B00 | 4.10.520.10 | Few Secondary Structures › Irregular › HU Protein; Chain A › IHF-like DNA-binding proteins | 0.89 | 83.0 | 8.07e-01 | 98.9% | 91.8% |
| 1owfA00 | 4.10.520.10 | Few Secondary Structures › Irregular › HU Protein; Chain A › IHF-like DNA-binding proteins | 0.88 | 82.0 | 7.99e-01 | 100.0% | 93.8% |
| 6lmjB00 | 4.10.520.10 | Few Secondary Structures › Irregular › HU Protein; Chain A › IHF-like DNA-binding proteins | 0.84 | 77.0 | 7.50e-01 | 98.9% | 94.9% |
| 2iieA01 | 4.10.520.10 | Few Secondary Structures › Irregular › HU Protein; Chain A › IHF-like DNA-binding proteins | 0.82 | 74.0 | 6.98e-01 | 100.0% | 87.0% |
| 2ndpA00 | 4.10.520.10 | Few Secondary Structures › Irregular › HU Protein; Chain A › IHF-like DNA-binding proteins | 0.77 | 70.0 | 6.79e-01 | 98.9% | 91.9% |
| 4fmrA02 | 4.10.520.10 | Few Secondary Structures › Irregular › HU Protein; Chain A › IHF-like DNA-binding proteins | 0.77 | 67.0 | 6.80e-01 | 98.9% | 94.3% |
| 4n1vA00 | 4.10.520.10 | Few Secondary Structures › Irregular › HU Protein; Chain A › IHF-like DNA-binding proteins | 0.75 | 68.0 | 6.78e-01 | 98.9% | 95.7% |
| 1wtuA00 | 4.10.520.10 | Few Secondary Structures › Irregular › HU Protein; Chain A › IHF-like DNA-binding proteins | 0.68 | 62.0 | 6.03e-01 | 100.0% | 90.9% |
| 2z99A01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.62 | 38.0 | 3.91e-01 | 84.4% | 64.4% |
| 1h6qA00 | 2.170.150.10 | Mainly Beta › Beta Complex › Metal Binding Protein, Guanine Nucleotide Exchange Factor; Chain A › Metal Binding Protein, Guanine Nucleotide Exchange Factor; Chain A | 0.59 | 33.0 | 2.72e-01 | 96.7% | 28.6% |
ECOD (30)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4643900 | 101.17.1.1 ↗ | alpha arrays › HTH › IHF-like DNA-binding proteins › IHF-like DNA-binding proteins › Bac_DNA_binding | 0.98 | 72.0 | 8.23e-01 | 97.8% | 97.1% |
| 4599773 | 101.17.1.1 ↗ | alpha arrays › HTH › IHF-like DNA-binding proteins › IHF-like DNA-binding proteins › Bac_DNA_binding | 0.95 | 71.0 | 7.89e-01 | 98.9% | 94.5% |
| 3971236 | 101.17.1.1 ↗ | alpha arrays › HTH › IHF-like DNA-binding proteins › IHF-like DNA-binding proteins › Bac_DNA_binding | 0.95 | 71.0 | 7.90e-01 | 98.9% | 94.5% |
| 4165727 | 101.17.1.1 ↗ | alpha arrays › HTH › IHF-like DNA-binding proteins › IHF-like DNA-binding proteins › Bac_DNA_binding | 0.95 | 70.0 | 7.93e-01 | 97.8% | 97.1% |
| 4108127 | 101.17.1.1 ↗ | alpha arrays › HTH › IHF-like DNA-binding proteins › IHF-like DNA-binding proteins › Bac_DNA_binding | 0.93 | 88.0 | 8.65e-01 | 98.9% | 94.7% |
| 4028228 | 101.17.1.1 ↗ | alpha arrays › HTH › IHF-like DNA-binding proteins › IHF-like DNA-binding proteins › Bac_DNA_binding | 0.93 | 66.0 | 7.54e-01 | 95.6% | 94.3% |
| 4272320 | 101.17.1.1 ↗ | alpha arrays › HTH › IHF-like DNA-binding proteins › IHF-like DNA-binding proteins › Bac_DNA_binding | 0.93 | 63.0 | 7.36e-01 | 91.1% | 95.4% |
| 163570 | 101.17.1.1 ↗ | alpha arrays › HTH › IHF-like DNA-binding proteins › IHF-like DNA-binding proteins › Bac_DNA_binding | 0.93 | 88.0 | 8.42e-01 | 100.0% | 94.1% |
| 4508411 | 101.17.1.1 ↗ | alpha arrays › HTH › IHF-like DNA-binding proteins › IHF-like DNA-binding proteins › Bac_DNA_binding | 0.92 | 87.0 | 8.40e-01 | 100.0% | 90.0% |
| 4051851 | 101.17.1.1 ↗ | alpha arrays › HTH › IHF-like DNA-binding proteins › IHF-like DNA-binding proteins › Bac_DNA_binding | 0.92 | 86.0 | 8.27e-01 | 98.9% | 98.0% |
| 4284216 | 101.17.1.1 ↗ | alpha arrays › HTH › IHF-like DNA-binding proteins › IHF-like DNA-binding proteins › Bac_DNA_binding | 0.91 | 85.0 | 8.40e-01 | 100.0% | 94.7% |
| 1859698 | 101.17.1.1 ↗ | alpha arrays › HTH › IHF-like DNA-binding proteins › IHF-like DNA-binding proteins › Bac_DNA_binding | 0.90 | 75.0 | 7.77e-01 | 98.9% | 91.8% |
| 4088528 | 101.17.1.1 ↗ | alpha arrays › HTH › IHF-like DNA-binding proteins › IHF-like DNA-binding proteins › Bac_DNA_binding | 0.90 | 85.0 | 8.14e-01 | 100.0% | 92.0% |
| 222497 | 101.17.1.1 ↗ | alpha arrays › HTH › IHF-like DNA-binding proteins › IHF-like DNA-binding proteins › Bac_DNA_binding | 0.90 | 84.0 | 8.11e-01 | 98.9% | 90.8% |
| 4227571 | 101.17.1.1 ↗ | alpha arrays › HTH › IHF-like DNA-binding proteins › IHF-like DNA-binding proteins › Bac_DNA_binding | 0.89 | 83.0 | 8.02e-01 | 100.0% | 91.0% |
| 4662987 | 101.17.1.0 ↗ | alpha arrays › HTH › IHF-like DNA-binding proteins › IHF-like DNA-binding proteins | 0.89 | 83.0 | 8.16e-01 | 100.0% | 94.7% |
| 3964061 | 101.17.1.1 ↗ | alpha arrays › HTH › IHF-like DNA-binding proteins › IHF-like DNA-binding proteins › Bac_DNA_binding | 0.89 | 83.0 | 7.91e-01 | 100.0% | 93.3% |
| 5073165 | 101.17.1.0 ↗ | alpha arrays › HTH › IHF-like DNA-binding proteins › IHF-like DNA-binding proteins | 0.88 | 80.0 | 8.03e-01 | 97.8% | 97.8% |
| 4183750 | 101.17.1.1 ↗ | alpha arrays › HTH › IHF-like DNA-binding proteins › IHF-like DNA-binding proteins › Bac_DNA_binding | 0.87 | 65.0 | 6.90e-01 | 100.0% | 87.5% |
| 4240651 | 101.17.1.1 ↗ | alpha arrays › HTH › IHF-like DNA-binding proteins › IHF-like DNA-binding proteins › Bac_DNA_binding | 0.86 | 79.0 | 7.62e-01 | 98.9% | 89.0% |
| 4274974 | 101.17.1.1 ↗ | alpha arrays › HTH › IHF-like DNA-binding proteins › IHF-like DNA-binding proteins › Bac_DNA_binding | 0.86 | 79.0 | 7.60e-01 | 100.0% | 90.0% |
| 4194238 | 101.17.1.1 ↗ | alpha arrays › HTH › IHF-like DNA-binding proteins › IHF-like DNA-binding proteins › Bac_DNA_binding | 0.85 | 69.0 | 7.36e-01 | 98.9% | 96.2% |
| 4681823 | 101.17.1.1 ↗ | alpha arrays › HTH › IHF-like DNA-binding proteins › IHF-like DNA-binding proteins › Bac_DNA_binding | 0.82 | 75.0 | 7.24e-01 | 100.0% | 90.0% |
| 2627940 | 101.17.1.1 ↗ | alpha arrays › HTH › IHF-like DNA-binding proteins › IHF-like DNA-binding proteins › Bac_DNA_binding | 0.81 | 75.0 | 7.29e-01 | 98.9% | 93.9% |
| 1916727 | 101.17.1.1 ↗ | alpha arrays › HTH › IHF-like DNA-binding proteins › IHF-like DNA-binding proteins › Bac_DNA_binding | 0.77 | 70.0 | 6.79e-01 | 98.9% | 91.9% |
| 4168202 | 101.17.1.0 ↗ | alpha arrays › HTH › IHF-like DNA-binding proteins › IHF-like DNA-binding proteins | 0.69 | 62.0 | 6.16e-01 | 97.8% | 96.8% |
| 2909 | 101.17.1.1 ↗ | alpha arrays › HTH › IHF-like DNA-binding proteins › IHF-like DNA-binding proteins › Bac_DNA_binding | 0.66 | 58.0 | 5.66e-01 | 100.0% | 96.0% |
| 3483174 | 5052.1.1.1 ↗ | alpha complex topology › Proton glutamate symport protein › Proton glutamate symport protein › Proton glutamate symport protein › SDF | 0.56 | 44.0 | 2.77e-01 | 82.2% | 72.4% |
| 3833003 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.53 | 26.0 | 2.71e-01 | 95.6% | 48.2% |
| 3685970 | 9.1.1.0 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins | 0.51 | 34.0 | 2.85e-01 | 70.0% | 54.7% |