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SRR1747018_scaffold_0_prodigal-single.1__X__X__00109
Bact-VirSRR1747018_scaffold_0_prodigal-single.1__X__X__00109
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 136-324
Domain cluster:
rep: NC_021330__YP_008059651.1__M202-gp129__00089__D21-171
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00004.36 best | AAA | 65.2 | 1.20e-17 | 69.8% | 96.2% |
| PF07728.21 | AAA_5 | 22.1 | 1.80e-04 | 67.7% | 54.7% |
CATH (30)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3sylA01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.94 | 87.0 | 8.57e-01 | 100.0% | 90.5% |
| 3pvsB01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.79 | 58.0 | 6.46e-01 | 95.8% | 93.4% |
| 3u61C01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.77 | 56.0 | 6.01e-01 | 95.2% | 86.4% |
| 5e7pA01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.74 | 63.0 | 6.57e-01 | 98.9% | 97.7% |
| 6p8vA01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.74 | 68.0 | 6.60e-01 | 98.9% | 94.8% |
| 4bj1A02 | 3.40.50.12060 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.68 | 51.0 | 5.69e-01 | 92.6% | 98.0% |
| 7rzy101 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.64 | 56.0 | 5.71e-01 | 92.6% | 95.2% |
| 1pjrA03 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.64 | 47.0 | 4.60e-01 | 74.1% | 84.5% |
| 7q1bA01 | 3.40.800.20 | Alpha Beta › 3-Layer(aba) Sandwich › Arginase; Chain A › Histone deacetylase domain | 0.63 | 56.0 | 4.45e-01 | 95.2% | 74.5% |
| 5g0gA00 | 3.40.800.20 | Alpha Beta › 3-Layer(aba) Sandwich › Arginase; Chain A › Histone deacetylase domain | 0.63 | 55.0 | 4.45e-01 | 94.7% | 73.9% |
| 8ea4D01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.62 | 50.0 | 5.40e-01 | 91.5% | 100.0% |
| 6s8oB02 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.59 | 54.0 | 5.24e-01 | 98.9% | 97.6% |
| 1szpB02 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.59 | 51.0 | 4.98e-01 | 96.3% | 82.9% |
| 5dcaA09 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.59 | 54.0 | 5.23e-01 | 98.4% | 96.2% |
| 8alzB05 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.59 | 54.0 | 5.24e-01 | 98.4% | 97.6% |
| 5ailA00 | 3.40.220.10 | Alpha Beta › 3-Layer(aba) Sandwich › Leucine Aminopeptidase, subunit E; domain 1 › Leucine Aminopeptidase, subunit E, domain 1 | 0.59 | 41.0 | 4.25e-01 | 70.9% | 96.1% |
| 3ug7C00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.57 | 41.0 | 3.46e-01 | 72.0% | 69.8% |
| 7e24A01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.56 | 39.0 | 3.65e-01 | 70.4% | 97.9% |
| 4a8jA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.56 | 52.0 | 4.56e-01 | 100.0% | 76.2% |
| 4cqmG00 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.55 | 39.0 | 3.70e-01 | 70.9% | 96.4% |
| 2bdtA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.54 | 38.0 | 4.03e-01 | 72.0% | 86.0% |
| 4umlA00 | 3.40.220.10 | Alpha Beta › 3-Layer(aba) Sandwich › Leucine Aminopeptidase, subunit E; domain 1 › Leucine Aminopeptidase, subunit E, domain 1 | 0.54 | 46.0 | 4.50e-01 | 89.9% | 99.0% |
| 4iqyB00 | 3.40.220.10 | Alpha Beta › 3-Layer(aba) Sandwich › Leucine Aminopeptidase, subunit E; domain 1 › Leucine Aminopeptidase, subunit E, domain 1 | 0.52 | 45.0 | 4.35e-01 | 95.8% | 96.3% |
| 5kivA01 | 3.40.220.10 | Alpha Beta › 3-Layer(aba) Sandwich › Leucine Aminopeptidase, subunit E; domain 1 › Leucine Aminopeptidase, subunit E, domain 1 | 0.51 | 42.0 | 4.24e-01 | 85.2% | 100.0% |
| 1tezA01 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.51 | 32.0 | 3.80e-01 | 88.9% | 92.2% |
| 2jieA00 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.51 | 43.0 | 3.27e-01 | 91.0% | 78.4% |
| 3tjrA00 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.51 | 41.0 | 3.72e-01 | 85.7% | 87.9% |
| 2rbgA00 | 3.40.50.11100 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.50 | 32.0 | 3.86e-01 | 72.5% | 96.8% |
| 6ptzA01 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.50 | 32.0 | 3.74e-01 | 88.9% | 91.5% |
| 1fmcA00 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.50 | 42.0 | 3.78e-01 | 88.4% | 88.6% |
ECOD (83)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3957732 | 2004.1.1.1 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA | 0.98 | 93.0 | 8.69e-01 | 100.0% | 82.7% |
| 3955103 | 2004.1.1.415 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA, RuvB_N | 0.97 | 93.0 | 9.19e-01 | 100.0% | 94.4% |
| 4387003 | 2004.1.1.1 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA | 0.96 | 91.0 | 8.04e-01 | 100.0% | 72.2% |
| 3956498 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.95 | 91.0 | 7.35e-01 | 100.0% | 58.4% |
| 1600541 | 2004.1.1.1 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA | 0.94 | 87.0 | 8.20e-01 | 100.0% | 81.8% |
| None | — | 0.93 | 88.0 | 8.63e-01 | 100.0% | 92.5% | |
| 3673255 | 2004.1.1.1 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA | 0.92 | 87.0 | 8.86e-01 | 100.0% | 98.9% |
| 4011302 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.91 | 81.0 | 6.61e-01 | 97.9% | 55.5% |
| 4013999 | 2004.1.1.1 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA | 0.90 | 79.0 | 8.28e-01 | 97.4% | 98.3% |
| 4011303 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.89 | 86.0 | 8.43e-01 | 100.0% | 98.0% |
| 4021405 | 2004.1.1.1 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA | 0.88 | 85.0 | 8.42e-01 | 100.0% | 97.9% |
| 4011942 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.87 | 84.0 | 8.39e-01 | 100.0% | 98.9% |
| 3352873 | 109.3.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat | 0.86 | 81.0 | 6.29e-01 | 100.0% | 50.4% |
| 4013997 | 2004.1.1.1 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA | 0.86 | 78.0 | 8.08e-01 | 96.8% | 99.4% |
| 3942494 | 2004.1.1.1 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA | 0.81 | 65.0 | 6.57e-01 | 96.3% | 83.2% |
| 3192815 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.80 | 76.0 | 5.80e-01 | 100.0% | 57.6% |
| 3663724 | 2004.1.1.1 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA | 0.79 | 64.0 | 6.63e-01 | 93.1% | 89.7% |
| 4947768 | 2004.1.1.1 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA | 0.79 | 68.0 | 7.05e-01 | 96.3% | 96.0% |
| 4012028 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.78 | 60.0 | 6.63e-01 | 96.8% | 96.8% |
| 3490281 | 2004.1.1.1 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA | 0.78 | 63.0 | 6.49e-01 | 96.8% | 87.8% |
| 5000554 | 2004.1.1.1 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA | 0.78 | 67.0 | 6.56e-01 | 96.3% | 84.5% |
| 4975402 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.77 | 64.0 | 5.85e-01 | 98.4% | 66.9% |
| 4998712 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.77 | 64.0 | 6.76e-01 | 94.7% | 97.6% |
| 3181190 | 2004.1.1.1 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA | 0.75 | 63.0 | 6.02e-01 | 94.2% | 76.7% |
| 4022961 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.75 | 63.0 | 5.86e-01 | 96.8% | 71.7% |
| 3806709 | 2004.1.1.462 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › NBD_SMAX1 | 0.75 | 60.0 | 5.87e-01 | 95.8% | 77.1% |
| None | — | 0.74 | 50.0 | 5.60e-01 | 74.1% | 86.7% | |
| None | — | 0.74 | 59.0 | 5.14e-01 | 95.2% | 57.1% | |
| 3194070 | 2004.1.1.1 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA | 0.73 | 64.0 | 5.67e-01 | 96.8% | 66.2% |
| 4018671 | 2004.1.1.1 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA | 0.72 | 65.0 | 5.67e-01 | 98.4% | 65.9% |
| 3938861 | 2004.1.1.1 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA | 0.72 | 62.0 | 6.47e-01 | 98.9% | 97.7% |
| 4224234 | 2004.1.1.1 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA | 0.71 | 61.0 | 6.38e-01 | 98.4% | 100.0% |
| 4947766 | 2004.1.1.1 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA | 0.71 | 65.0 | 6.32e-01 | 98.4% | 90.5% |
| 3200120 | 2004.1.1.1 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA | 0.71 | 62.0 | 5.59e-01 | 98.9% | 69.4% |
| 4444758 | 2004.1.1.1 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA | 0.70 | 65.0 | 6.49e-01 | 100.0% | 98.5% |
| 4021485 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.70 | 65.0 | 6.33e-01 | 98.9% | 96.6% |
| 3361148 | 2004.1.1.462 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › NBD_SMAX1 | 0.69 | 61.0 | 5.69e-01 | 92.6% | 76.5% |
| None | — | 0.69 | 62.0 | 5.94e-01 | 100.0% | 83.3% | |
| 3585293 | 2004.1.1.1 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA | 0.69 | 63.0 | 6.28e-01 | 98.4% | 94.9% |
| 4930324 | 2004.1.1.1 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA | 0.68 | 53.0 | 5.31e-01 | 93.7% | 78.9% |
| 4966358 | 2004.1.1.66 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ATPase_2 | 0.67 | 60.0 | 5.61e-01 | 94.7% | 98.7% |
| 4998020 | 2004.1.1.196 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_22 | 0.67 | 58.0 | 5.71e-01 | 94.7% | 85.5% |
| 3188395 | 2004.1.1.1 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA | 0.67 | 63.0 | 5.75e-01 | 100.0% | 95.9% |
| 3242035 | 2004.1.1.1 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA | 0.67 | 63.0 | 5.21e-01 | 100.0% | 81.2% |
| 4928460 | 2004.1.1.196 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_22 | 0.67 | 57.0 | 6.00e-01 | 89.4% | 99.4% |
| 3376097 | 2004.1.1.675 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_2, NBD_SMAX1 | 0.67 | 62.0 | 4.46e-01 | 100.0% | 42.7% |
| None | — | 0.66 | 59.0 | 5.71e-01 | 95.2% | 91.9% | |
| 5044646 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.66 | 59.0 | 4.78e-01 | 94.7% | 68.5% |
| 3168091 | 2004.1.1.196 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_22 | 0.66 | 59.0 | 5.37e-01 | 95.8% | 87.8% |
| 3193018 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.65 | 61.0 | 5.44e-01 | 100.0% | 89.6% |
| 3478500 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.65 | 57.0 | 5.56e-01 | 94.7% | 88.6% |
| 5012557 | 2004.1.1.95 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF257 | 0.64 | 52.0 | 5.15e-01 | 86.2% | 90.6% |
| 4416168 | 2004.1.1.66 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ATPase_2 | 0.64 | 54.0 | 5.33e-01 | 88.9% | 99.5% |
| 4029954 | 2004.1.1.364 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DEAD+Helicase_C | 0.63 | 54.0 | 3.91e-01 | 89.9% | 41.0% |
| 3603655 | 2004.1.1.66 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ATPase_2 | 0.63 | 56.0 | 4.78e-01 | 94.7% | 74.6% |
| 5072811 | 2004.1.1.1 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA | 0.63 | 57.0 | 5.47e-01 | 97.4% | 99.1% |
| 4057956 | 2004.1.1.35 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Bac_DnaA | 0.63 | 59.0 | 5.48e-01 | 100.0% | 83.0% |
| 5005212 | 2004.1.1.76 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF87 | 0.63 | 57.0 | 4.33e-01 | 97.4% | 84.4% |
| 4201521 | 2004.1.1.1 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA | 0.61 | 58.0 | 4.66e-01 | 100.0% | 60.8% |
| None | — | 0.61 | 53.0 | 5.28e-01 | 93.1% | 98.5% | |
| 5063190 | 2004.1.1.1 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA | 0.61 | 51.0 | 4.81e-01 | 92.6% | 71.7% |
| 3616266 | 2004.1.1.364 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DEAD+Helicase_C | 0.60 | 55.0 | 4.14e-01 | 98.4% | 44.7% |
| None | — | 0.60 | 55.0 | 5.21e-01 | 98.9% | 94.2% | |
| 3211954 | 2004.1.1.29 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DEAD | 0.60 | 55.0 | 5.38e-01 | 97.9% | 97.6% |
| 3167322 | 2004.1.1.228 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › RIF2_ASCE | 0.60 | 52.0 | 5.11e-01 | 93.1% | 94.6% |
| 3438965 | 2005.1.1.0 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains | 0.60 | 30.0 | 3.98e-01 | 88.4% | 89.0% |
| 3937474 | 2004.1.1.29 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DEAD | 0.60 | 54.0 | 5.10e-01 | 98.4% | 89.1% |
| 5072980 | 2004.1.1.146 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ATPase | 0.59 | 53.0 | 4.89e-01 | 97.9% | 76.2% |
| 3628354 | 2004.1.1.29 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DEAD | 0.59 | 54.0 | 5.15e-01 | 98.4% | 91.8% |
| 1501440 | 7529.1.1.1 ↗ | a/b three-layered sandwiches › Macro domain-like › Macro domain-like › Macro domain-like › Macro | 0.59 | 41.0 | 4.25e-01 | 70.9% | 95.6% |
| 4198238 | 2004.1.1.63 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › FtsK_SpoIIIE | 0.59 | 55.0 | 4.69e-01 | 99.5% | 69.2% |
| 3727158 | 2004.1.1.366 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › NPHP3_N | 0.59 | 51.0 | 4.64e-01 | 92.6% | 78.0% |
| 3775741 | 2004.1.1.130 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › NACHT | 0.59 | 52.0 | 4.81e-01 | 94.7% | 84.7% |
| 2413755 | 2004.1.1.29 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DEAD | 0.58 | 50.0 | 4.78e-01 | 91.0% | 96.7% |
| 4979214 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.58 | 53.0 | 5.08e-01 | 99.5% | 89.1% |
| 3255969 | 2004.1.1.174 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Elong_Iki1 | 0.58 | 48.0 | 4.21e-01 | 88.4% | 76.3% |
| 4963630 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.57 | 53.0 | 4.66e-01 | 100.0% | 81.7% |
| None | — | 0.57 | 49.0 | 4.08e-01 | 90.5% | 67.8% | |
| 5026992 | 2004.1.1.76 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF87 | 0.57 | 52.0 | 4.07e-01 | 97.9% | 82.5% |
| 4972573 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.57 | 52.0 | 4.14e-01 | 99.5% | 81.9% |
| 5037846 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.55 | 51.0 | 4.98e-01 | 97.4% | 100.0% |
| 3313696 | 7529.1.1.1 ↗ | a/b three-layered sandwiches › Macro domain-like › Macro domain-like › Macro domain-like › Macro | 0.54 | 46.0 | 4.25e-01 | 90.5% | 87.4% |
| 3740375 | 7501.1.1.0 ↗ | a/b three-layered sandwiches › Dihydrofolate reductases › Dihydrofolate reductases › Dihydrofolate reductases | 0.52 | 34.0 | 3.45e-01 | 92.6% | 62.4% |
D2
high
residues 330-447
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF17866.9 best | AAA_lid_6 | 55.8 | 6.20e-15 | 83.0% | 95.7% |
CATH (27)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3sykA02 | 1.10.8.60 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.89 | 64.0 | 7.33e-01 | 84.7% | 96.7% |
| 1iqpA02 | 1.10.8.60 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.80 | 44.0 | 5.74e-01 | 79.7% | 98.4% |
| 3zh9B02 | 1.10.8.60 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.80 | 45.0 | 5.69e-01 | 81.4% | 94.3% |
| 2v6zM00 | 1.10.8.60 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.78 | 48.0 | 5.95e-01 | 78.8% | 97.3% |
| 3d8bB02 | 1.10.8.60 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.78 | 52.0 | 6.12e-01 | 80.5% | 97.6% |
| 1x42A02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.66 | 37.0 | 4.35e-01 | 82.2% | 78.3% |
| 1rp3A01 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.63 | 39.0 | 4.51e-01 | 74.6% | 87.1% |
| 6pmiF01 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.63 | 39.0 | 4.59e-01 | 74.6% | 92.5% |
| 2ox6D00 | 1.10.3100.10 | Mainly Alpha › Orthogonal Bundle › Putative cytoplasmic protein › Putative cytoplasmic protein | 0.59 | 38.0 | 3.47e-01 | 82.2% | 47.8% |
| 3a06B03 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.59 | 41.0 | 4.61e-01 | 81.4% | 95.5% |
| 4m70B00 | 1.10.246.200 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › WPP domain | 0.58 | 41.0 | 4.51e-01 | 74.6% | 94.5% |
| 4od4A01 | 1.10.357.140 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › UbiA prenyltransferase | 0.56 | 43.0 | 3.90e-01 | 79.7% | 96.2% |
| 2fsfB04 | 1.10.3060.10 | Mainly Alpha › Orthogonal Bundle › Helical scaffold and wing domains of SecA › Helical scaffold and wing domains of SecA | 0.56 | 41.0 | 3.43e-01 | 77.1% | 75.9% |
| 7t7kA01 | 1.20.930.60 | Mainly Alpha › Up-down Bundle › Transcription Elongation Factor S-II; Chain A › | 0.56 | 39.0 | 3.99e-01 | 72.9% | 91.5% |
| 2e1qC10 | 3.30.365.10 | Alpha Beta › 2-Layer Sandwich › Aldehyde Oxidoreductase; domain 4 › Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain | 0.56 | 45.0 | 4.43e-01 | 89.8% | 80.5% |
| 1qguB04 | 1.20.89.10 | Mainly Alpha › Up-down Bundle › Nitrogenase Molybdenum-iron Protein, subunit B; domain 4 › Nitrogenase Molybdenum-iron Protein, subunit B, domain 4 | 0.54 | 34.0 | 3.98e-01 | 97.5% | 90.4% |
| 2igsA00 | 1.10.3690.10 | Mainly Alpha › Orthogonal Bundle › PA2222-like fold › PA2222-like domain | 0.54 | 41.0 | 3.45e-01 | 82.2% | 86.4% |
| 1qr0A01 | 3.90.470.20 | Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › 4'-phosphopantetheinyl transferase domain | 0.52 | 34.0 | 3.43e-01 | 76.3% | 62.4% |
| 4gc0A01 | 1.20.1250.20 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › MFS general substrate transporter like domains | 0.52 | 44.0 | 3.52e-01 | 94.1% | 52.2% |
| 2ex3B02 | 1.20.1270.230 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › DNA terminal protein Gp3, priming domain | 0.52 | 32.0 | 3.68e-01 | 85.6% | 88.9% |
| 3q1xA01 | 1.10.3130.10 | Mainly Alpha › Orthogonal Bundle › serine acetyltransferase, domain 1 › serine acetyltransferase, domain 1 | 0.52 | 40.0 | 3.82e-01 | 82.2% | 77.7% |
| 3qbeA02 | 1.20.1090.10 | Mainly Alpha › Up-down Bundle › Dehydroquinate synthase-like, alpha domain › Dehydroquinate synthase-like - alpha domain | 0.52 | 39.0 | 3.36e-01 | 78.8% | 95.1% |
| 5xe7A01 | 1.20.140.160 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › PhyR, sigma-like (SL) domain | 0.51 | 36.0 | 3.41e-01 | 72.9% | 73.2% |
| 3phuA01 | 3.90.70.80 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › | 0.51 | 34.0 | 3.15e-01 | 82.2% | 51.6% |
| 4krdB00 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.50 | 40.0 | 3.49e-01 | 87.3% | 61.6% |
| 1guxB00 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.50 | 40.0 | 3.74e-01 | 83.9% | 78.7% |
| 3tqgB01 | 1.10.580.10 | Mainly Alpha › Orthogonal Bundle › Citrate Synthase; domain 1 › Citrate Synthase, domain 1 | 0.50 | 42.0 | 3.32e-01 | 91.5% | 80.0% |
ECOD (39)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4013995 | 148.1.3.23 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_6 | 0.89 | 61.0 | 7.16e-01 | 78.0% | 96.5% |
| 4415082 | 148.1.3.23 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_6 | 0.87 | 62.0 | 7.09e-01 | 78.8% | 95.6% |
| 4011290 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.86 | 58.0 | 6.81e-01 | 78.0% | 95.3% |
| 3289682 | 148.1.3.23 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_6 | 0.85 | 70.0 | 7.25e-01 | 84.7% | 100.0% |
| 4238496 | 148.1.3.23 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_6 | 0.85 | 69.0 | 7.34e-01 | 83.9% | 97.1% |
| 4649085 | 148.1.3.23 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_6 | 0.85 | 70.0 | 7.45e-01 | 86.4% | 96.2% |
| 3953286 | 148.1.3.23 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_6 | 0.85 | 72.0 | 7.49e-01 | 88.1% | 97.3% |
| 4446481 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.83 | 61.0 | 6.06e-01 | 76.3% | 72.4% |
| 4011919 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.82 | 63.0 | 6.54e-01 | 78.8% | 100.0% |
| 4680072 | 148.1.3.23 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_6 | 0.82 | 66.0 | 7.19e-01 | 93.2% | 99.0% |
| 3620740 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.79 | 58.0 | 6.45e-01 | 87.3% | 95.8% |
| 5023792 | 148.1.3.19 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_3 | 0.73 | 60.0 | 6.24e-01 | 87.3% | 98.2% |
| 3709213 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.73 | 56.0 | 6.04e-01 | 87.3% | 95.0% |
| 3609318 | 148.1.3.19 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_3 | 0.72 | 55.0 | 5.86e-01 | 91.5% | 90.5% |
| 3596559 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.71 | 55.0 | 5.99e-01 | 87.3% | 96.0% |
| 3773199 | 148.1.3.19 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_3 | 0.69 | 51.0 | 5.41e-01 | 87.3% | 90.0% |
| 4993487 | 3457.1.1.1 ↗ | alpha bundles › GxGD membrane protease › GxGD membrane protease › GxGD membrane protease › Peptidase_A24 | 0.67 | 54.0 | 4.62e-01 | 83.9% | 60.6% |
| 3350039 | 148.1.3.19 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_3 | 0.67 | 50.0 | 5.53e-01 | 89.8% | 97.9% |
| 4232288 | 4275.1.1.10 ↗ | alpha arrays › Hypothetical protein YqbG-like › Hypothetical protein YqbG-like › Hypothetical protein YqbG-like › NifW | 0.67 | 37.0 | 4.58e-01 | 70.3% | 90.0% |
| 5028154 | 3831.1.1.0 ↗ | alpha bundles › Secreted protein of unknown function DUF1311 › Secreted protein of unknown function DUF1311 › Secreted protein of unknown function DUF1311 | 0.66 | 48.0 | 4.73e-01 | 75.4% | 72.0% |
| 5056832 | 3457.1.1.1 ↗ | alpha bundles › GxGD membrane protease › GxGD membrane protease › GxGD membrane protease › Peptidase_A24 | 0.66 | 50.0 | 4.50e-01 | 83.9% | 58.1% |
| 3788953 | 142.1.1.0 ↗ | alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors | 0.65 | 46.0 | 5.10e-01 | 76.3% | 95.6% |
| 3915524 | 304.28.1.17 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain › Sterol-sensing | 0.64 | 46.0 | 2.68e-01 | 80.5% | 9.2% |
| 5059874 | 3896.1.1.2 ↗ | alpha duplicates or obligate multimers › Intramembrane CDP-DAG synthetase-related › Intramembrane CDP-DAG synthetase-related › Intramembrane CDP-DAG synthetase › DUF92 | 0.62 | 52.0 | 4.07e-01 | 91.5% | 87.0% |
| 3197873 | 4953.1.1.16 ↗ | beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › Arv1 | 0.62 | 45.0 | 4.22e-01 | 75.4% | 97.2% |
| 3496553 | 3998.1.1.0 ↗ | alpha arrays › Peptidase inhibitors family I29 › Peptidase inhibitors family I29 › Peptidase inhibitors family I29 | 0.61 | 33.0 | 4.20e-01 | 70.3% | 90.0% |
| 3714282 | 5081.1.1.2 ↗ | alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › DER1 | 0.60 | 49.0 | 4.20e-01 | 89.8% | 96.9% |
| 5084048 | 3831.1.1.15 ↗ | alpha bundles › Secreted protein of unknown function DUF1311 › Secreted protein of unknown function DUF1311 › Secreted protein of unknown function DUF1311 › HAAS | 0.59 | 38.0 | 4.35e-01 | 71.2% | 89.4% |
| 4971714 | 5051.1.1.10 ↗ | alpha complex topology › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › AA_permease_2 | 0.58 | 42.0 | 2.87e-01 | 73.7% | 90.6% |
| 5043713 | 3896.1.1.2 ↗ | alpha duplicates or obligate multimers › Intramembrane CDP-DAG synthetase-related › Intramembrane CDP-DAG synthetase-related › Intramembrane CDP-DAG synthetase › DUF92 | 0.57 | 48.0 | 3.78e-01 | 93.2% | 99.6% |
| 3182158 | 5050.1.1.9 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 | 0.56 | 49.0 | 3.91e-01 | 96.6% | 90.2% |
| 3697319 | 2004.1.1.364 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DEAD+Helicase_C | 0.55 | 46.0 | 3.00e-01 | 90.7% | 34.0% |
| 3543771 | 632.2.1.44 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Bacterial immunoglobulin/albumin-binding domains › Bacterial immunoglobulin/albumin-binding domains › BTB | 0.54 | 37.0 | 3.94e-01 | 91.5% | 81.0% |
| 3973887 | 5050.1.1.9 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 | 0.53 | 43.0 | 3.59e-01 | 100.0% | 51.5% |
| 3977737 | 3831.1.1.1 ↗ | alpha bundles › Secreted protein of unknown function DUF1311 › Secreted protein of unknown function DUF1311 › Secreted protein of unknown function DUF1311 › LprI | 0.52 | 36.0 | 3.70e-01 | 72.0% | 76.5% |
| 3535235 | 5050.1.1.9 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 | 0.51 | 43.0 | 3.51e-01 | 100.0% | 49.1% |
| 3686878 | 5050.1.1.9 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 | 0.51 | 42.0 | 3.50e-01 | 100.0% | 50.5% |
| 5041273 | 632.22.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats | 0.51 | 40.0 | 4.24e-01 | 83.1% | 100.0% |
| 3217780 | 5050.1.1.9 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 | 0.50 | 43.0 | 3.54e-01 | 94.9% | 84.5% |