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SRR1747018_scaffold_0_prodigal-single.1__X__X__00112

Bact-Vir

SRR1747018_scaffold_0_prodigal-single.1__X__X__00112

Identity

Kingdom:
phage

Quality

65.3 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 42-134
PDB
D2 medium residues 188-276
PDB
Domain cluster: representative
CATH (11)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3zfiA00 1.10.890.40 Mainly Alpha › Orthogonal Bundle › 10k-s Protein, Hypothetical Protein A; Chain A › 0.68 49.0 4.85e-01 87.6% 72.0%
6pmiF01 1.10.1740.10 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif 0.68 51.0 5.36e-01 86.5% 88.7%
1cfrA00 3.40.91.10 Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › 0.60 46.0 3.21e-01 82.0% 48.1%
3gi7A00 1.20.1270.180 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.59 45.0 4.30e-01 79.8% 88.3%
1n5uA02 1.10.246.10 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › 0.59 39.0 3.95e-01 84.3% 66.7%
2bsqA00 3.40.50.1010 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 5'-nuclease 0.56 39.0 3.36e-01 71.9% 57.3%
7eq1R01 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.54 44.0 3.21e-01 92.1% 50.4%
4r8zA00 1.10.3210.10 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 0.54 46.0 3.55e-01 97.8% 68.3%
2qgsB01 1.10.472.50 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › HD-domain/PDEase-like 0.52 45.0 4.54e-01 98.9% 94.3%
7pl7A01 3.90.70.80 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.52 39.0 3.28e-01 79.8% 55.9%
2h92A00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.51 41.0 3.11e-01 88.8% 36.1%
ECOD (11)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3998578 142.1.1.41 ↗ alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › RabGAP-TBC 0.69 46.0 5.24e-01 82.0% 95.4%
3704554 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.61 47.0 4.80e-01 83.1% 95.5%
3205121 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.58 47.0 4.97e-01 100.0% 98.8%
5042711 101.1.10.0 ↗ alpha arrays › HTH › HTH › Cyclin-like 0.58 51.0 4.34e-01 96.6% 85.5%
3283581 191.1.1.54 ↗ alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › TetR_C_32 0.57 45.0 3.90e-01 87.6% 65.5%
5079341 2006.1.4.2 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN 0.56 39.0 3.44e-01 70.8% 70.8%
5017995 2006.1.4.2 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN 0.56 39.0 3.48e-01 71.9% 75.2%
5051956 2006.1.4.2 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN 0.55 38.0 3.35e-01 71.9% 60.7%
5045856 2006.1.4.2 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN 0.54 38.0 3.65e-01 74.2% 77.1%
5068100 2006.1.4.2 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN 0.53 38.0 3.40e-01 74.2% 72.0%
4013315 148.1.3.216 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › DUF7069 0.52 47.0 4.52e-01 100.0% 98.0%