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SRR1747018_scaffold_0_prodigal-single.1__X__X__00126
Bact-VirSRR1747018_scaffold_0_prodigal-single.1__X__X__00126
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 438-487
Domain cluster:
representative
CATH (13)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2hf1A01 | 2.20.25.10 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.63 | 43.0 | 4.24e-01 | 74.0% | 83.6% |
| 3d89A00 | 2.102.10.10 | Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain | 0.58 | 47.0 | 3.59e-01 | 98.0% | 61.8% |
| 3m7nA03 | 2.20.70.10 | Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › | 0.58 | 38.0 | 4.13e-01 | 86.0% | 100.0% |
| 2poiA00 | 1.10.1170.10 | Mainly Alpha › Orthogonal Bundle › Inhibitor Of Apoptosis Protein (2mihbC-IAP-1); Chain A › Inhibitor Of Apoptosis Protein (2mihbC-IAP-1); Chain A | 0.57 | 39.0 | 3.47e-01 | 72.0% | 57.7% |
| 3gkeA01 | 2.102.10.10 | Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain | 0.57 | 47.0 | 3.65e-01 | 100.0% | 61.5% |
| 4kt3B00 | 3.10.450.170 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › type vi secretion system effector-immunity co pseudomonas protegens | 0.56 | 46.0 | 3.59e-01 | 100.0% | 75.0% |
| 2qpzA00 | 2.102.10.10 | Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain | 0.55 | 46.0 | 3.78e-01 | 100.0% | 81.6% |
| 4zgfA00 | 2.40.128.270 | Mainly Beta › Beta Barrel › Lipocalin › | 0.55 | 42.0 | 3.21e-01 | 92.0% | 55.3% |
| 1l5jA02 | 3.20.19.10 | Alpha Beta › Alpha-Beta Barrel › Aconitase; domain 4 › Aconitase, domain 4 | 0.55 | 47.0 | 3.16e-01 | 100.0% | 32.0% |
| 1r77A00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.54 | 36.0 | 3.08e-01 | 72.0% | 87.9% |
| 7sz2A01 | 3.30.720.50 | Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › | 0.52 | 43.0 | 3.64e-01 | 96.0% | 55.4% |
| 1iq8A03 | 3.10.450.90 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › ArcTGT, C2 domain | 0.52 | 37.0 | 3.41e-01 | 80.0% | 77.0% |
| 1gu2A00 | 1.10.760.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome Bc1 Complex; Chain D, domain 2 › Cytochrome c-like domain | 0.52 | 41.0 | 3.27e-01 | 98.0% | 74.2% |
ECOD (10)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3522043 | 375.1.1.290 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › OCRE | 0.68 | 49.0 | 4.73e-01 | 80.0% | 78.3% |
| 3292956 | 375.1.1.37 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TF_Zn_Ribbon | 0.68 | 46.0 | 4.61e-01 | 70.0% | 94.0% |
| 3493216 | 3964.1.1.1 ↗ | beta meanders › OCRE domain of RBM10 › OCRE domain of RBM10 › OCRE domain of RBM10 › OCRE | 0.66 | 48.0 | 4.40e-01 | 80.0% | 61.4% |
| 3992934 | 3964.1.1.1 ↗ | beta meanders › OCRE domain of RBM10 › OCRE domain of RBM10 › OCRE domain of RBM10 › OCRE | 0.63 | 47.0 | 4.42e-01 | 86.0% | 75.4% |
| 4943988 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.62 | 39.0 | 4.38e-01 | 80.0% | 91.4% |
| 4927162 | 4294.1.1.5 ↗ | few secondary structure elements › Trm112p-like › Trm112p-like › Trm112p-like › DUF3179 | 0.61 | 52.0 | 3.92e-01 | 98.0% | 62.8% |
| 4233257 | 66.1.1.1 ↗ | beta sandwiches › ISP domain › ISP domain › ISP domain › Rieske | 0.59 | 47.0 | 3.64e-01 | 100.0% | 68.9% |
| 4228064 | 386.1.1.244 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2, zf-met | 0.53 | 36.0 | 3.09e-01 | 82.0% | 41.2% |
| 4940391 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.51 | 42.0 | 3.30e-01 | 98.0% | 85.6% |
| 3273181 | 60.1.2.2 ↗ | beta barrels › SPOC domain-like › SPOC domain-related › Ku70/80 subunit middle domain › Ku,Ku_C | 0.50 | 35.0 | 2.35e-01 | 80.0% | 61.1% |
D2
medium
residues 93-220_339-386
Domain cluster:
rep: KX077889.1__ANM47364.1__X__00044__D161-256_351-422
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF03816.20 best | LytR_cpsA_psr | 43.7 | 4.40e-11 | 64.8% | 47.3% |
CATH (9)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6mptA01 | 3.30.420.590 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › | 0.80 | 66.0 | 6.80e-01 | 96.0% | 88.8% |
| 3okzB00 | 3.40.630.190 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › LCP protein | 0.74 | 69.0 | 5.65e-01 | 97.2% | 89.5% |
| 6uf3A00 | 3.40.630.190 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › LCP protein | 0.73 | 68.0 | 5.83e-01 | 96.0% | 98.4% |
| 2xxpA02 | 3.40.630.190 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › LCP protein | 0.71 | 67.0 | 5.66e-01 | 98.3% | 98.5% |
| 3pe5A00 | 3.40.630.190 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › LCP protein | 0.69 | 64.0 | 5.35e-01 | 96.6% | 97.8% |
| 3nroA00 | 3.40.630.190 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › LCP protein | 0.67 | 62.0 | 5.49e-01 | 96.0% | 98.7% |
| 4obmA00 | 3.40.630.190 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › LCP protein | 0.64 | 58.0 | 5.02e-01 | 95.5% | 94.2% |
| 1v7wA02 | 2.60.420.10 | Mainly Beta › Sandwich › Maltose phosphorylase, domain 3 › Maltose phosphorylase, domain 3 | 0.56 | 24.0 | 3.23e-01 | 97.7% | 76.2% |
| 3i7fA01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.50 | 25.0 | 2.94e-01 | 92.6% | 64.8% |
ECOD (15)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3286073 | 268.2.1.1 ↗ | a+b two layers › Sterol carrier protein-like › LytR-Cps2A-Psr (LCP) enzymes › LytR-Cps2A-Psr (LCP) enzymes › LytR_cpsA_psr | 0.85 | 79.0 | 6.41e-01 | 96.0% | 93.7% |
| 3954850 | 268.2.1.1 ↗ | a+b two layers › Sterol carrier protein-like › LytR-Cps2A-Psr (LCP) enzymes › LytR-Cps2A-Psr (LCP) enzymes › LytR_cpsA_psr | 0.81 | 77.0 | 6.07e-01 | 98.3% | 95.3% |
| 3959704 | 268.2.1.0 ↗ | a+b two layers › Sterol carrier protein-like › LytR-Cps2A-Psr (LCP) enzymes › LytR-Cps2A-Psr (LCP) enzymes | 0.80 | 67.0 | 5.77e-01 | 86.4% | 97.3% |
| 4233293 | 268.2.1.1 ↗ | a+b two layers › Sterol carrier protein-like › LytR-Cps2A-Psr (LCP) enzymes › LytR-Cps2A-Psr (LCP) enzymes › LytR_cpsA_psr | 0.75 | 70.0 | 5.78e-01 | 96.0% | 92.1% |
| 4034144 | 268.2.1.1 ↗ | a+b two layers › Sterol carrier protein-like › LytR-Cps2A-Psr (LCP) enzymes › LytR-Cps2A-Psr (LCP) enzymes › LytR_cpsA_psr | 0.75 | 69.0 | 5.63e-01 | 96.0% | 85.3% |
| 4398690 | 268.2.1.1 ↗ | a+b two layers › Sterol carrier protein-like › LytR-Cps2A-Psr (LCP) enzymes › LytR-Cps2A-Psr (LCP) enzymes › LytR_cpsA_psr | 0.74 | 71.0 | 5.64e-01 | 98.9% | 94.9% |
| 3987489 | 268.2.1.1 ↗ | a+b two layers › Sterol carrier protein-like › LytR-Cps2A-Psr (LCP) enzymes › LytR-Cps2A-Psr (LCP) enzymes › LytR_cpsA_psr | 0.74 | 68.0 | 5.57e-01 | 94.9% | 99.0% |
| 3589536 | 268.2.1.1 ↗ | a+b two layers › Sterol carrier protein-like › LytR-Cps2A-Psr (LCP) enzymes › LytR-Cps2A-Psr (LCP) enzymes › LytR_cpsA_psr | 0.73 | 69.0 | 5.75e-01 | 97.7% | 88.9% |
| 4032281 | 268.2.1.1 ↗ | a+b two layers › Sterol carrier protein-like › LytR-Cps2A-Psr (LCP) enzymes › LytR-Cps2A-Psr (LCP) enzymes › LytR_cpsA_psr | 0.73 | 67.0 | 5.65e-01 | 96.0% | 91.6% |
| 4608056 | 268.2.1.1 ↗ | a+b two layers › Sterol carrier protein-like › LytR-Cps2A-Psr (LCP) enzymes › LytR-Cps2A-Psr (LCP) enzymes › LytR_cpsA_psr | 0.72 | 67.0 | 5.52e-01 | 96.6% | 85.1% |
| 2529960 | 268.2.1.1 ↗ | a+b two layers › Sterol carrier protein-like › LytR-Cps2A-Psr (LCP) enzymes › LytR-Cps2A-Psr (LCP) enzymes › LytR_cpsA_psr | 0.70 | 66.0 | 5.48e-01 | 98.3% | 92.9% |
| 119489 | 268.2.1.1 ↗ | a+b two layers › Sterol carrier protein-like › LytR-Cps2A-Psr (LCP) enzymes › LytR-Cps2A-Psr (LCP) enzymes › LytR_cpsA_psr | 0.69 | 65.0 | 5.62e-01 | 96.6% | 92.0% |
| 146943 | 268.2.1.1 ↗ | a+b two layers › Sterol carrier protein-like › LytR-Cps2A-Psr (LCP) enzymes › LytR-Cps2A-Psr (LCP) enzymes › LytR_cpsA_psr | 0.69 | 64.0 | 5.34e-01 | 96.6% | 97.5% |
| 3588485 | 268.2.1.1 ↗ | a+b two layers › Sterol carrier protein-like › LytR-Cps2A-Psr (LCP) enzymes › LytR-Cps2A-Psr (LCP) enzymes › LytR_cpsA_psr | 0.68 | 62.0 | 5.41e-01 | 95.5% | 98.0% |
| 1144695 | 268.2.1.0 ↗ | a+b two layers › Sterol carrier protein-like › LytR-Cps2A-Psr (LCP) enzymes › LytR-Cps2A-Psr (LCP) enzymes | 0.64 | 58.0 | 5.02e-01 | 95.5% | 94.2% |
D3
medium
residues 221-338
Domain cluster:
rep: KX077889.1__ANM47364.1__X__00044__D257-350
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF03816.20 best | LytR_cpsA_psr | 64.6 | 1.70e-17 | 67.8% | 50.7% |
CATH (9)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6uf3A00 | 3.40.630.190 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › LCP protein | 0.90 | 79.0 | 5.90e-01 | 100.0% | 42.1% |
| 6mptA02 | 3.40.630.190 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › LCP protein | 0.86 | 60.0 | 7.11e-01 | 83.9% | 100.0% |
| 2xxpA02 | 3.40.630.190 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › LCP protein | 0.85 | 75.0 | 5.58e-01 | 100.0% | 40.5% |
| 3nroA00 | 3.40.630.190 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › LCP protein | 0.84 | 66.0 | 5.16e-01 | 100.0% | 41.3% |
| 3pe5A00 | 3.40.630.190 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › LCP protein | 0.77 | 72.0 | 5.34e-01 | 100.0% | 42.2% |
| 3okzB00 | 3.40.630.190 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › LCP protein | 0.77 | 72.0 | 5.27e-01 | 100.0% | 40.0% |
| 4obmA00 | 3.40.630.190 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › LCP protein | 0.76 | 68.0 | 5.24e-01 | 100.0% | 45.0% |
| 3k9iA01 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.55 | 32.0 | 3.37e-01 | 89.0% | 62.1% |
| 5zyuA01 | 3.90.320.10 | Alpha Beta › Alpha-Beta Complex › Lambda Exonuclease; Chain A › | 0.53 | 36.0 | 3.06e-01 | 70.3% | 53.7% |
ECOD (15)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3959704 | 268.2.1.0 ↗ | a+b two layers › Sterol carrier protein-like › LytR-Cps2A-Psr (LCP) enzymes › LytR-Cps2A-Psr (LCP) enzymes | 0.91 | 86.0 | 6.39e-01 | 100.0% | 44.8% |
| 3286073 | 268.2.1.1 ↗ | a+b two layers › Sterol carrier protein-like › LytR-Cps2A-Psr (LCP) enzymes › LytR-Cps2A-Psr (LCP) enzymes › LytR_cpsA_psr | 0.88 | 83.0 | 5.92e-01 | 100.0% | 38.7% |
| 3949794 | 268.2.1.1 ↗ | a+b two layers › Sterol carrier protein-like › LytR-Cps2A-Psr (LCP) enzymes › LytR-Cps2A-Psr (LCP) enzymes › LytR_cpsA_psr | 0.88 | 81.0 | 5.85e-01 | 100.0% | 39.3% |
| 4621397 | 268.2.1.1 ↗ | a+b two layers › Sterol carrier protein-like › LytR-Cps2A-Psr (LCP) enzymes › LytR-Cps2A-Psr (LCP) enzymes › LytR_cpsA_psr | 0.88 | 80.0 | 5.80e-01 | 100.0% | 39.1% |
| 3589536 | 268.2.1.1 ↗ | a+b two layers › Sterol carrier protein-like › LytR-Cps2A-Psr (LCP) enzymes › LytR-Cps2A-Psr (LCP) enzymes › LytR_cpsA_psr | 0.87 | 75.0 | 5.52e-01 | 100.0% | 38.2% |
| 3954850 | 268.2.1.1 ↗ | a+b two layers › Sterol carrier protein-like › LytR-Cps2A-Psr (LCP) enzymes › LytR-Cps2A-Psr (LCP) enzymes › LytR_cpsA_psr | 0.86 | 78.0 | 5.55e-01 | 100.0% | 35.6% |
| 119489 | 268.2.1.1 ↗ | a+b two layers › Sterol carrier protein-like › LytR-Cps2A-Psr (LCP) enzymes › LytR-Cps2A-Psr (LCP) enzymes › LytR_cpsA_psr | 0.85 | 70.0 | 5.32e-01 | 100.0% | 40.2% |
| 2529960 | 268.2.1.1 ↗ | a+b two layers › Sterol carrier protein-like › LytR-Cps2A-Psr (LCP) enzymes › LytR-Cps2A-Psr (LCP) enzymes › LytR_cpsA_psr | 0.84 | 74.0 | 5.43e-01 | 100.0% | 38.5% |
| 4233293 | 268.2.1.1 ↗ | a+b two layers › Sterol carrier protein-like › LytR-Cps2A-Psr (LCP) enzymes › LytR-Cps2A-Psr (LCP) enzymes › LytR_cpsA_psr | 0.84 | 77.0 | 5.63e-01 | 100.0% | 40.7% |
| 3588485 | 268.2.1.1 ↗ | a+b two layers › Sterol carrier protein-like › LytR-Cps2A-Psr (LCP) enzymes › LytR-Cps2A-Psr (LCP) enzymes › LytR_cpsA_psr | 0.83 | 75.0 | 5.68e-01 | 100.0% | 44.4% |
| 4608056 | 268.2.1.1 ↗ | a+b two layers › Sterol carrier protein-like › LytR-Cps2A-Psr (LCP) enzymes › LytR-Cps2A-Psr (LCP) enzymes › LytR_cpsA_psr | 0.83 | 73.0 | 5.34e-01 | 100.0% | 38.1% |
| 4032281 | 268.2.1.1 ↗ | a+b two layers › Sterol carrier protein-like › LytR-Cps2A-Psr (LCP) enzymes › LytR-Cps2A-Psr (LCP) enzymes › LytR_cpsA_psr | 0.81 | 71.0 | 5.25e-01 | 100.0% | 39.6% |
| 4398690 | 268.2.1.1 ↗ | a+b two layers › Sterol carrier protein-like › LytR-Cps2A-Psr (LCP) enzymes › LytR-Cps2A-Psr (LCP) enzymes › LytR_cpsA_psr | 0.79 | 74.0 | 5.30e-01 | 100.0% | 37.8% |
| 146943 | 268.2.1.1 ↗ | a+b two layers › Sterol carrier protein-like › LytR-Cps2A-Psr (LCP) enzymes › LytR-Cps2A-Psr (LCP) enzymes › LytR_cpsA_psr | 0.77 | 72.0 | 5.33e-01 | 100.0% | 42.1% |
| 1144695 | 268.2.1.0 ↗ | a+b two layers › Sterol carrier protein-like › LytR-Cps2A-Psr (LCP) enzymes › LytR-Cps2A-Psr (LCP) enzymes | 0.76 | 68.0 | 5.24e-01 | 100.0% | 45.0% |