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SRR1747018_scaffold_0_prodigal-single.1__X__X__00149
Bact-VirSRR1747018_scaffold_0_prodigal-single.1__X__X__00149
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 65-133
Domain cluster:
rep: pig_ID_3640_F65_scaffold_23_curated_prodigal-single.1__X__X__00254__D10-71
CATH (41)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2fhdA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.76 | 54.0 | 5.72e-01 | 100.0% | 83.9% |
| 1z47A03 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.69 | 41.0 | 4.69e-01 | 79.7% | 83.7% |
| 1ci3M02 | 2.40.50.100 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain | 0.66 | 42.0 | 4.54e-01 | 88.4% | 77.6% |
| 1gd5A00 | 3.30.1520.10 | Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain | 0.66 | 48.0 | 3.88e-01 | 76.8% | 73.1% |
| 1gutA00 | 2.40.50.100 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain | 0.66 | 45.0 | 4.60e-01 | 85.5% | 73.1% |
| 1b9mA03 | 2.40.50.100 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain | 0.66 | 47.0 | 4.73e-01 | 95.7% | 74.6% |
| 1vq8A01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.64 | 45.0 | 4.35e-01 | 87.0% | 65.4% |
| 3k7cA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.63 | 54.0 | 4.66e-01 | 95.7% | 94.4% |
| 2eyqA05 | 2.40.10.170 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.62 | 43.0 | 4.50e-01 | 100.0% | 84.7% |
| 6jy5B00 | 2.40.50.220 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › EutN/Ccml | 0.62 | 39.0 | 3.74e-01 | 78.3% | 53.7% |
| 1x6oA02 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.61 | 42.0 | 4.09e-01 | 82.6% | 63.3% |
| 1lm4A00 | 3.90.45.10 | Alpha Beta › Alpha-Beta Complex › Peptide Deformylase › Peptide deformylase | 0.61 | 51.0 | 3.69e-01 | 92.8% | 86.3% |
| 2hx0A01 | 3.30.1330.80 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Hypothetical protein, similar to alpha- acetolactate decarboxylase; domain 2 | 0.60 | 49.0 | 3.95e-01 | 100.0% | 46.2% |
| 5c7qB00 | 3.90.79.10 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase | 0.60 | 41.0 | 3.02e-01 | 71.0% | 65.0% |
| 1u9tA02 | 3.40.1570.10 | Alpha Beta › 3-Layer(aba) Sandwich › Heme iron utilization protein-like fold › HemS/ChuS/ChuX like domains | 0.59 | 45.0 | 3.36e-01 | 81.2% | 78.7% |
| 3lh4A00 | 3.10.450.10 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.59 | 49.0 | 4.22e-01 | 95.7% | 80.9% |
| 7q5yB01 | 3.30.460.80 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › NADH:ubiquinone oxidoreductase Nqo5 subunit | 0.59 | 46.0 | 3.96e-01 | 89.9% | 60.0% |
| 4bt2A01 | 3.30.1330.80 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Hypothetical protein, similar to alpha- acetolactate decarboxylase; domain 2 | 0.58 | 36.0 | 3.09e-01 | 100.0% | 36.8% |
| 7tzoA01 | 1.10.1070.11 | Mainly Alpha › Orthogonal Bundle › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, Domain 5 › Phosphatidylinositol 3-/4-kinase, catalytic domain | 0.57 | 46.0 | 3.41e-01 | 87.0% | 99.4% |
| 2yrlA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.57 | 44.0 | 4.20e-01 | 85.5% | 81.9% |
| 4hcsA00 | 2.40.50.40 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.57 | 37.0 | 3.82e-01 | 88.4% | 70.1% |
| 3ebtA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.57 | 47.0 | 3.91e-01 | 95.7% | 82.4% |
| 3e4wA02 | 2.40.180.10 | Mainly Beta › Beta Barrel › Catalase HpII, Chain A, domain 1 › Catalase core domain | 0.57 | 49.0 | 3.56e-01 | 100.0% | 84.1% |
| 2czoA00 | 3.30.1520.10 | Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain | 0.56 | 43.0 | 3.55e-01 | 84.1% | 75.4% |
| 3exzB00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.56 | 48.0 | 3.77e-01 | 95.7% | 90.5% |
| 3a0oA03 | 2.70.98.70 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › | 0.55 | 45.0 | 3.11e-01 | 95.7% | 50.5% |
| 3sjnA01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.55 | 38.0 | 3.28e-01 | 73.9% | 46.2% |
| 1bqgA01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.55 | 39.0 | 3.16e-01 | 75.4% | 43.5% |
| 2gfaB01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.55 | 39.0 | 4.04e-01 | 95.7% | 82.3% |
| 3c96A01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.55 | 47.0 | 3.57e-01 | 97.1% | 49.4% |
| 4jcwA02 | 2.60.40.760 | Mainly Beta › Sandwich › Immunoglobulin-like › Expansin, cellulose-binding-like domain | 0.54 | 44.0 | 4.04e-01 | 89.9% | 84.4% |
| 3qu1A00 | 3.90.45.10 | Alpha Beta › Alpha-Beta Complex › Peptide Deformylase › Peptide deformylase | 0.54 | 45.0 | 3.52e-01 | 98.6% | 72.6% |
| 3f4lA02 | 3.30.360.10 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 | 0.53 | 44.0 | 3.11e-01 | 94.2% | 71.7% |
| 4wiwA02 | 3.10.50.10 | Alpha Beta › Roll › Chitinase A; domain 3 › | 0.53 | 34.0 | 3.47e-01 | 79.7% | 66.7% |
| 1kopA00 | 3.10.200.10 | Alpha Beta › Roll › Carbonic Anhydrase II › Alpha carbonic anhydrase | 0.52 | 44.0 | 3.17e-01 | 98.6% | 42.2% |
| 4twlA00 | 3.10.200.10 | Alpha Beta › Roll › Carbonic Anhydrase II › Alpha carbonic anhydrase | 0.51 | 43.0 | 3.07e-01 | 100.0% | 38.5% |
| 2i9iA00 | 3.30.160.180 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Putative neuraminyllactose-binding hemagglutinin homolog like domain | 0.51 | 41.0 | 2.99e-01 | 94.2% | 67.9% |
| 4aefA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.51 | 41.0 | 3.73e-01 | 89.9% | 90.5% |
| 1ddqC02 | 3.90.1100.10 | Alpha Beta › Alpha-Beta Complex › Rna Polymerase Beta Subunit; Chain: C,domain 2 › | 0.50 | 44.0 | 2.85e-01 | 100.0% | 36.4% |
| 4xfwA00 | 3.10.200.10 | Alpha Beta › Roll › Carbonic Anhydrase II › Alpha carbonic anhydrase | 0.50 | 42.0 | 3.04e-01 | 100.0% | 36.7% |
| 4m00A03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.50 | 39.0 | 3.69e-01 | 87.0% | 79.1% |
ECOD (51)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5043533 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.76 | 57.0 | 5.96e-01 | 100.0% | 85.9% |
| 3584555 | 4.8.1.0 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like | 0.70 | 57.0 | 5.71e-01 | 100.0% | 85.7% |
| 3886492 | 4.1.1.154 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF4772 | 0.70 | 54.0 | 5.29e-01 | 100.0% | 76.0% |
| 5011604 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.69 | 57.0 | 4.50e-01 | 88.4% | 88.9% |
| 5019744 | 2.1.1.384 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF30889 | 0.68 | 50.0 | 4.50e-01 | 78.3% | 56.8% |
| 4935709 | 2.1.1.17 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › OB_aCoA_assoc | 0.66 | 44.0 | 3.86e-01 | 76.8% | 45.7% |
| 3925426 | 220.1.1.176 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › DUF7778 | 0.64 | 53.0 | 4.26e-01 | 92.8% | 70.0% |
| 3787501 | 277.1.1.1 ↗ | a+b two layers › PX domain › PX domain › PX domain › PX | 0.64 | 45.0 | 3.60e-01 | 75.4% | 82.1% |
| 4994410 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.64 | 50.0 | 4.71e-01 | 87.0% | 89.4% |
| 4456732 | 325.1.7.0 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif | 0.62 | 40.0 | 3.83e-01 | 89.9% | 56.2% |
| 3286642 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.62 | 50.0 | 4.36e-01 | 91.3% | 73.6% |
| 3730190 | 277.1.1.1 ↗ | a+b two layers › PX domain › PX domain › PX domain › PX | 0.61 | 46.0 | 3.76e-01 | 81.2% | 70.8% |
| 5067186 | 2.1.1.17 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › OB_aCoA_assoc | 0.61 | 43.0 | 3.90e-01 | 76.8% | 53.7% |
| 3715886 | 5.1.3.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed | 0.60 | 51.0 | 3.23e-01 | 95.7% | 41.6% |
| 4416106 | 2.1.1.1 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosom_S12_S23 | 0.60 | 47.0 | 3.76e-01 | 84.1% | 64.2% |
| 3439990 | 220.1.1.76 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_2 | 0.60 | 48.0 | 4.39e-01 | 87.0% | 72.2% |
| 3844416 | 5.1.4.229 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_EMC1_N | 0.60 | 49.0 | 3.03e-01 | 89.9% | 92.6% |
| 3991065 | 4.1.1.334 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_1, SH3_2 | 0.60 | 54.0 | 5.17e-01 | 100.0% | 87.5% |
| 4468322 | 218.1.1.8 ↗ | a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › HrcA | 0.59 | 40.0 | 3.58e-01 | 76.8% | 49.0% |
| 4982277 | 295.1.1.0 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain | 0.59 | 39.0 | 4.06e-01 | 71.0% | 73.8% |
| 3406509 | 206.1.1.55 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › EcKL | 0.59 | 48.0 | 3.02e-01 | 92.8% | 30.3% |
| 3617638 | 330.1.1.1 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm | 0.59 | 44.0 | 3.87e-01 | 82.6% | 53.3% |
| 3819724 | 4.1.1.20 ↗ | beta barrels › SH3 › SH3 › SH3 › BAH | 0.59 | 52.0 | 3.85e-01 | 100.0% | 54.1% |
| 4931302 | 802.1.1.0 ↗ | a+b two layers › Hypothetical protein TM0160 › Hypothetical protein TM0160 › Hypothetical protein TM0160 | 0.59 | 38.0 | 4.23e-01 | 75.4% | 92.0% |
| 3364309 | 220.1.1.76 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_2 | 0.58 | 48.0 | 3.92e-01 | 91.3% | 80.8% |
| 3255783 | 295.1.1.4 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › COMM_domain | 0.58 | 40.0 | 4.06e-01 | 72.5% | 75.7% |
| 4190010 | 4272.1.1.1 ↗ | a+b two layers › Nqo5-like › Nqo5-like › Nqo5-like › Complex1_30kDa | 0.58 | 46.0 | 3.75e-01 | 89.9% | 55.0% |
| 3709896 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.58 | 50.0 | 4.66e-01 | 100.0% | 77.6% |
| 2502534 | 2.1.1.1 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosom_S12_S23 | 0.57 | 45.0 | 4.15e-01 | 84.1% | 72.4% |
| 4957055 | 708.1.1.0 ↗ | beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain | 0.57 | 43.0 | 4.25e-01 | 91.3% | 77.3% |
| 3174658 | 220.1.1.1 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH | 0.56 | 40.0 | 3.66e-01 | 78.3% | 56.7% |
| 5055383 | 298.1.1.24 ↗ | a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › GFO_IDH_MocA_C3 | 0.56 | 41.0 | 3.19e-01 | 85.5% | 34.4% |
| 5065386 | 4252.1.1.0 ↗ | beta barrels › AttH-like › AttH-like › AttH-like | 0.56 | 48.0 | 3.96e-01 | 98.6% | 92.3% |
| 3958613 | 2484.1.1.199 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Transposase_mut | 0.55 | 41.0 | 3.63e-01 | 82.6% | 74.5% |
| 4958552 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.55 | 39.0 | 3.40e-01 | 76.8% | 47.0% |
| 3197575 | 2.1.1.1 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosom_S12_S23 | 0.55 | 38.0 | 3.59e-01 | 81.2% | 56.7% |
| 3760460 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.55 | 45.0 | 4.62e-01 | 94.2% | 95.6% |
| 5077400 | 192.2.1.0 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin | 0.54 | 37.0 | 3.27e-01 | 87.0% | 48.1% |
| 1582813 | 298.1.1.24 ↗ | a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › GFO_IDH_MocA_C3 | 0.54 | 40.0 | 3.22e-01 | 85.5% | 38.8% |
| 3551263 | 206.1.1.8 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PI3_PI4_kinase,FATC | 0.53 | 45.0 | 2.81e-01 | 97.1% | 31.3% |
| 3217221 | 206.1.2.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › SAICAR synthase › SAICAR_synt | 0.53 | 41.0 | 2.92e-01 | 92.8% | 74.7% |
| 4088884 | 325.1.7.0 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif | 0.52 | 41.0 | 3.80e-01 | 89.9% | 76.8% |
| 3953859 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.52 | 40.0 | 4.09e-01 | 82.6% | 98.5% |
| 3683412 | 62.1.1.1 ↗ | beta meanders › Carbonic anhydrase › Carbonic anhydrase › Carbonic anhydrase › Carb_anhydrase | 0.52 | 44.0 | 3.30e-01 | 100.0% | 49.2% |
| 3189705 | 2003.1.2.9 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › GDI | 0.52 | 43.0 | 2.72e-01 | 95.7% | 88.5% |
| 1549576 | 2.1.1.1 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosom_S12_S23 | 0.52 | 38.0 | 3.17e-01 | 82.6% | 71.5% |
| 4818765 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.51 | 40.0 | 4.31e-01 | 85.5% | 100.0% |
| 3208258 | 4.8.1.0 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like | 0.51 | 46.0 | 3.57e-01 | 100.0% | 75.3% |
| 3440052 | 11.1.1.887 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_TMM62 | 0.51 | 40.0 | 3.33e-01 | 88.4% | 90.0% |
| 3869205 | 5.1.4.31 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Lgl_C | 0.51 | 41.0 | 2.58e-01 | 95.7% | 21.5% |
| 4619868 | 76.1.1.0 ↗ | beta duplicates or obligate multimers › beta-Prism I › beta-Prism I › beta-Prism I | 0.50 | 42.0 | 3.22e-01 | 97.1% | 90.0% |