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SRR1747018_scaffold_0_prodigal-single.1__X__X__00163
Bact-VirSRR1747018_scaffold_0_prodigal-single.1__X__X__00163
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 330-441
Domain cluster:
rep: Ig7659_scaffold_8_prodigal-single.1__X__X__00074__D183-300
CATH (56)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3jvvA01 | 3.30.450.90 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › | 0.92 | 79.0 | 8.40e-01 | 96.4% | 100.0% |
| 2ewvA01 | 3.30.450.90 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › | 0.91 | 80.0 | 8.37e-01 | 97.3% | 100.0% |
| 5fl3A01 | 3.30.450.90 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › | 0.87 | 74.0 | 7.86e-01 | 96.4% | 100.0% |
| 2gzaA01 | 3.30.450.90 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › | 0.78 | 67.0 | 6.81e-01 | 97.3% | 93.5% |
| 1p9rA01 | 3.30.450.90 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › | 0.78 | 69.0 | 6.98e-01 | 99.1% | 94.6% |
| 3rwxA01 | 2.40.128.340 | Mainly Beta › Beta Barrel › Lipocalin › | 0.65 | 48.0 | 4.77e-01 | 78.6% | 80.8% |
| 3lyxB00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.64 | 51.0 | 5.05e-01 | 84.8% | 87.5% |
| 2basA03 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.63 | 49.0 | 4.92e-01 | 84.8% | 81.0% |
| 3mqqB00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.63 | 50.0 | 4.97e-01 | 84.8% | 88.1% |
| 3fg8A00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.62 | 49.0 | 5.08e-01 | 84.8% | 91.5% |
| 2gj3A00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.62 | 49.0 | 4.85e-01 | 84.8% | 88.2% |
| 6kjuB01 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.62 | 49.0 | 4.90e-01 | 84.8% | 92.3% |
| 4hiaA00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.61 | 48.0 | 4.15e-01 | 83.9% | 61.9% |
| 7a6pB01 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.61 | 48.0 | 4.53e-01 | 84.8% | 78.3% |
| 3ewkA01 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.60 | 47.0 | 4.89e-01 | 83.0% | 99.0% |
| 3b33A00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.60 | 47.0 | 4.82e-01 | 83.0% | 90.8% |
| 4xrtA02 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.60 | 42.0 | 3.72e-01 | 71.4% | 54.4% |
| 6iouA02 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.60 | 42.0 | 4.26e-01 | 84.8% | 72.3% |
| 6hmjA01 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.59 | 47.0 | 4.82e-01 | 83.9% | 100.0% |
| 2r78C00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.59 | 46.0 | 4.62e-01 | 83.0% | 83.6% |
| 4hh2C04 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.59 | 47.0 | 4.69e-01 | 84.8% | 87.2% |
| 3k3dA00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.59 | 47.0 | 4.55e-01 | 84.8% | 81.7% |
| 3oloA00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.59 | 46.0 | 4.65e-01 | 83.0% | 86.5% |
| 4k08A00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.58 | 46.0 | 4.23e-01 | 83.0% | 93.8% |
| 4jgpA02 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.58 | 41.0 | 4.36e-01 | 83.0% | 82.8% |
| 3dteA03 | 3.30.450.130 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › irre protein | 0.58 | 43.0 | 4.82e-01 | 83.0% | 98.9% |
| 2xrnA02 | 3.30.450.40 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain | 0.58 | 46.0 | 3.98e-01 | 84.8% | 68.9% |
| 4hh3A01 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.58 | 45.0 | 4.48e-01 | 82.1% | 86.0% |
| 2kdkA01 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.58 | 45.0 | 4.63e-01 | 83.9% | 97.2% |
| 2zbbA02 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.57 | 40.0 | 4.54e-01 | 83.9% | 100.0% |
| 3bwlB00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.57 | 45.0 | 4.35e-01 | 83.0% | 81.3% |
| 5iu1B00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.57 | 45.0 | 4.51e-01 | 83.0% | 92.0% |
| 2m89A00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.57 | 37.0 | 3.52e-01 | 70.5% | 55.2% |
| 3mjqA00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.57 | 44.0 | 4.57e-01 | 83.9% | 94.4% |
| 1s67L00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.57 | 45.0 | 4.46e-01 | 84.8% | 89.1% |
| 4f3lB02 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.57 | 44.0 | 4.28e-01 | 84.8% | 81.4% |
| 3pxpA02 | 3.30.450.180 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › | 0.56 | 44.0 | 3.68e-01 | 84.8% | 78.9% |
| 3nhqA02 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.56 | 42.0 | 4.16e-01 | 83.0% | 74.8% |
| 1d06A00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.56 | 44.0 | 4.19e-01 | 83.9% | 80.8% |
| 3q63F00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.56 | 37.0 | 3.52e-01 | 70.5% | 55.4% |
| 2lnjA00 | 3.40.1000.10 | Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich | 0.55 | 41.0 | 3.63e-01 | 77.7% | 76.5% |
| 3mfxB00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.55 | 43.0 | 4.28e-01 | 82.1% | 86.8% |
| 6pzjA02 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.55 | 42.0 | 3.91e-01 | 83.0% | 77.0% |
| 2kf2A00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.55 | 38.0 | 3.34e-01 | 70.5% | 52.1% |
| 2gk6A02 | 2.40.30.230 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › | 0.55 | 33.0 | 3.67e-01 | 97.3% | 78.3% |
| 3e0yA00 | 3.30.450.40 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain | 0.54 | 40.0 | 3.62e-01 | 84.8% | 56.1% |
| 3zugB02 | 2.40.30.30 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Riboflavin kinase-like | 0.54 | 38.0 | 3.51e-01 | 97.3% | 57.0% |
| 3licA02 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.54 | 39.0 | 4.29e-01 | 84.8% | 97.7% |
| 1t17A00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.53 | 39.0 | 3.60e-01 | 85.7% | 59.5% |
| 3a9gA00 | 2.120.10.30 | Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain | 0.52 | 44.0 | 3.21e-01 | 95.5% | 94.4% |
| 4kqdB00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.52 | 41.0 | 4.08e-01 | 84.8% | 84.5% |
| 4wiwA02 | 3.10.50.10 | Alpha Beta › Roll › Chitinase A; domain 3 › | 0.51 | 31.0 | 3.85e-01 | 80.4% | 100.0% |
| 1pzdA02 | 3.30.310.10 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein | 0.51 | 42.0 | 4.26e-01 | 96.4% | 88.7% |
| 6g47A00 | 2.60.90.10 | Mainly Beta › Sandwich › Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) › Adenovirus pIV-related, attachment domain | 0.51 | 45.0 | 3.93e-01 | 99.1% | 87.7% |
| 3tw8A01 | 3.30.450.200 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Longin module | 0.51 | 38.0 | 3.65e-01 | 91.1% | 66.7% |
| 2gfgA00 | 2.40.320.10 | Mainly Beta › Beta Barrel › Hypothetical Protein Pfu-838710-001 › Hypothetical Protein Pfu-838710-001 | 0.50 | 36.0 | 3.02e-01 | 83.0% | 44.0% |
ECOD (93)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3966741 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.94 | 82.0 | 5.55e-01 | 97.3% | 29.7% |
| 3963338 | 2004.1.1.42 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T2SSE | 0.91 | 79.0 | 5.22e-01 | 97.3% | 25.9% |
| 4135753 | 2004.1.1.42 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T2SSE | 0.88 | 77.0 | 5.25e-01 | 99.1% | 29.5% |
| 2554619 | 2004.1.1.42 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T2SSE | 0.88 | 79.0 | 5.30e-01 | 100.0% | 29.1% |
| 2330703 | 2004.1.1.42 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T2SSE | 0.84 | 79.0 | 5.32e-01 | 100.0% | 31.5% |
| None | — | 0.82 | 73.0 | 5.04e-01 | 97.3% | 31.8% | |
| 2330704 | 2004.1.1.42 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T2SSE | 0.81 | 76.0 | 5.09e-01 | 100.0% | 32.5% |
| 4990771 | 2004.1.1.42 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T2SSE | 0.80 | 67.0 | 4.70e-01 | 96.4% | 30.5% |
| 4370678 | 2004.1.1.42 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T2SSE | 0.79 | 70.0 | 4.87e-01 | 97.3% | 30.9% |
| 4366164 | 2004.1.1.42 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T2SSE | 0.77 | 72.0 | 4.74e-01 | 100.0% | 33.4% |
| 3967995 | 2004.1.1.42 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T2SSE | 0.77 | 72.0 | 4.78e-01 | 100.0% | 36.4% |
| None | — | 0.71 | 57.0 | 3.99e-01 | 98.2% | 28.4% | |
| 4431296 | 2004.1.1.307 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Spore_III_AA | 0.70 | 57.0 | 4.06e-01 | 98.2% | 30.6% |
| 4228977 | 2004.1.1.307 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Spore_III_AA | 0.67 | 61.0 | 4.41e-01 | 98.2% | 36.9% |
| 5003155 | 223.1.1.25 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 | 0.66 | 53.0 | 4.42e-01 | 84.8% | 54.6% |
| 4979994 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.66 | 53.0 | 4.94e-01 | 84.8% | 78.5% |
| 5049432 | 223.1.1.13 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_3 | 0.64 | 51.0 | 3.59e-01 | 84.8% | 30.7% |
| 4973786 | 223.1.1.24 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_8 | 0.64 | 51.0 | 5.12e-01 | 84.8% | 90.4% |
| 3960269 | 223.1.1.24 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_8 | 0.64 | 51.0 | 4.55e-01 | 84.8% | 65.8% |
| 5075481 | 223.1.1.25 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 | 0.64 | 50.0 | 3.89e-01 | 83.0% | 42.5% |
| 4943044 | 223.1.1.25 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 | 0.63 | 51.0 | 5.14e-01 | 84.8% | 90.0% |
| 5019275 | 223.1.1.2 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS | 0.63 | 51.0 | 5.05e-01 | 84.8% | 91.3% |
| 5049662 | 223.1.1.13 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_3 | 0.63 | 50.0 | 5.00e-01 | 84.8% | 90.4% |
| 5083223 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.62 | 50.0 | 4.76e-01 | 84.8% | 80.0% |
| 5002072 | 223.1.1.13 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_3 | 0.62 | 50.0 | 3.73e-01 | 84.8% | 37.8% |
| 170035 | 223.1.1.14 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 | 0.62 | 49.0 | 5.25e-01 | 83.9% | 99.0% |
| 3502240 | 223.1.1.29 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_11 | 0.62 | 50.0 | 5.04e-01 | 84.8% | 92.7% |
| 5018817 | 223.1.1.25 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 | 0.62 | 49.0 | 4.85e-01 | 83.9% | 86.7% |
| 4980698 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.62 | 49.0 | 4.79e-01 | 84.8% | 82.4% |
| 5019133 | 223.1.1.13 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_3 | 0.62 | 50.0 | 4.70e-01 | 85.7% | 81.5% |
| 5048718 | 223.1.1.13 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_3 | 0.62 | 49.0 | 3.32e-01 | 84.8% | 25.6% |
| 4951931 | 223.1.1.25 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 | 0.62 | 49.0 | 4.92e-01 | 84.8% | 88.7% |
| 3171918 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.62 | 49.0 | 4.76e-01 | 84.8% | 84.8% |
| 4932136 | 223.1.1.13 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_3 | 0.62 | 50.0 | 4.96e-01 | 85.7% | 93.9% |
| 5044946 | 223.1.1.2 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS | 0.62 | 48.0 | 5.10e-01 | 83.0% | 98.0% |
| 4935289 | 223.1.1.25 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 | 0.61 | 49.0 | 4.51e-01 | 83.9% | 73.6% |
| 4996769 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.61 | 48.0 | 4.77e-01 | 83.9% | 81.7% |
| 4952200 | 223.1.1.2 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS | 0.61 | 49.0 | 3.80e-01 | 84.8% | 44.2% |
| 5045588 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.61 | 48.0 | 4.69e-01 | 83.0% | 84.2% |
| 4962861 | 223.1.1.13 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_3 | 0.61 | 49.0 | 4.99e-01 | 85.7% | 95.5% |
| 5063920 | 223.1.1.25 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 | 0.61 | 48.0 | 4.84e-01 | 83.9% | 87.0% |
| 4980683 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.61 | 48.0 | 3.66e-01 | 83.9% | 38.8% |
| 5017897 | 223.1.1.2 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS | 0.61 | 47.0 | 4.30e-01 | 82.1% | 64.7% |
| 4958961 | 223.1.1.13 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_3 | 0.61 | 49.0 | 4.64e-01 | 86.6% | 80.0% |
| 3234328 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.61 | 48.0 | 4.93e-01 | 84.8% | 89.5% |
| 4980684 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.61 | 48.0 | 3.19e-01 | 84.8% | 22.6% |
| 5044350 | 223.1.1.13 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_3 | 0.61 | 48.0 | 4.56e-01 | 84.8% | 83.0% |
| 4960019 | 223.1.1.2 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS | 0.61 | 44.0 | 4.42e-01 | 84.8% | 73.9% |
| 4944528 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.60 | 48.0 | 4.54e-01 | 84.8% | 82.2% |
| 3758249 | 223.1.1.13 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_3 | 0.60 | 48.0 | 4.43e-01 | 84.8% | 71.0% |
| 5063919 | 223.1.1.25 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 | 0.60 | 48.0 | 4.73e-01 | 84.8% | 79.2% |
| 4959116 | 223.1.1.25 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 | 0.60 | 48.0 | 3.90e-01 | 84.8% | 49.8% |
| 3966656 | 7523.1.1.0 ↗ | a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II | 0.60 | 48.0 | 3.49e-01 | 84.8% | 34.4% |
| 4946011 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.60 | 48.0 | 4.78e-01 | 84.8% | 88.7% |
| 4965929 | 223.1.1.13 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_3 | 0.60 | 47.0 | 3.42e-01 | 83.0% | 33.1% |
| 4958693 | 223.1.1.25 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 | 0.60 | 48.0 | 4.77e-01 | 84.8% | 87.0% |
| 3879380 | 223.1.1.29 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_11 | 0.60 | 50.0 | 4.57e-01 | 89.3% | 77.2% |
| 4930507 | 223.1.1.25 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 | 0.60 | 48.0 | 4.64e-01 | 84.8% | 81.6% |
| 5033694 | 223.1.1.13 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_3 | 0.60 | 46.0 | 4.51e-01 | 82.1% | 77.6% |
| 1271814 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.60 | 47.0 | 4.42e-01 | 83.9% | 73.7% |
| 5048058 | 223.1.1.25 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 | 0.60 | 47.0 | 4.80e-01 | 83.9% | 90.0% |
| 328257 | 223.1.1.14 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 | 0.60 | 47.0 | 4.85e-01 | 83.0% | 93.3% |
| 3998596 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.60 | 48.0 | 4.69e-01 | 85.7% | 84.2% |
| 4011407 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.60 | 47.0 | 4.51e-01 | 83.9% | 77.7% |
| 4958862 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.59 | 48.0 | 4.75e-01 | 84.8% | 88.7% |
| 4996177 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.59 | 47.0 | 4.60e-01 | 84.8% | 82.4% |
| 4944871 | 223.1.1.14 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 | 0.59 | 46.0 | 4.53e-01 | 83.0% | 82.5% |
| 4348177 | 223.1.1.2 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS | 0.59 | 46.0 | 4.34e-01 | 83.0% | 74.8% |
| 3271628 | 223.1.1.24 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_8 | 0.59 | 45.0 | 4.49e-01 | 81.2% | 78.3% |
| 165648 | 223.1.1.24 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_8 | 0.59 | 45.0 | 4.73e-01 | 82.1% | 93.2% |
| 4951689 | 223.1.1.2 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS | 0.59 | 46.0 | 4.70e-01 | 83.9% | 88.2% |
| 4944433 | 223.1.1.25 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 | 0.59 | 46.0 | 4.59e-01 | 83.9% | 84.3% |
| 4945536 | 223.1.1.24 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_8 | 0.58 | 45.0 | 4.52e-01 | 82.1% | 87.0% |
| 5007989 | 223.1.1.2 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS | 0.58 | 46.0 | 4.71e-01 | 84.8% | 92.7% |
| 5047585 | 223.1.1.25 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 | 0.58 | 47.0 | 4.59e-01 | 84.8% | 85.8% |
| 4980553 | 223.1.1.14 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 | 0.58 | 46.0 | 4.69e-01 | 84.8% | 93.6% |
| 4959107 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.58 | 46.0 | 4.69e-01 | 84.8% | 93.6% |
| 5045369 | 223.1.1.25 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 | 0.58 | 46.0 | 4.66e-01 | 84.8% | 93.6% |
| 3596677 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.57 | 42.0 | 4.57e-01 | 82.1% | 90.5% |
| 5004659 | 223.1.1.2 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS | 0.57 | 45.0 | 4.53e-01 | 83.0% | 90.9% |
| 4958153 | 223.1.1.24 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_8 | 0.57 | 45.0 | 4.36e-01 | 83.9% | 81.6% |
| 5008201 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.56 | 42.0 | 4.58e-01 | 83.9% | 92.6% |
| 3591665 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.55 | 40.0 | 3.49e-01 | 83.9% | 50.0% |
| 4932133 | 223.1.1.14 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 | 0.55 | 43.0 | 4.36e-01 | 84.8% | 90.9% |
| 3967946 | 223.1.1.97 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › sCache_2 | 0.54 | 43.0 | 3.81e-01 | 89.3% | 57.6% |
| 2895578 | 223.1.1.51 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › MCP-like_PDC_1 | 0.53 | 41.0 | 3.87e-01 | 83.9% | 84.2% |
| 3799364 | 223.2.1.4 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › DENN,uDENN | 0.52 | 40.0 | 3.37e-01 | 85.7% | 47.9% |
| 3487339 | 223.2.1.6 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › uDENN | 0.52 | 42.0 | 3.56e-01 | 85.7% | 54.3% |
| 1310612 | 223.1.1.91 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › TraJ | 0.52 | 41.0 | 4.08e-01 | 84.8% | 84.5% |
| 4592301 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.51 | 40.0 | 4.03e-01 | 85.7% | 81.7% |
| 3237828 | 331.9.1.9 ↗ | a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain › PF26171 | 0.51 | 40.0 | 4.09e-01 | 93.8% | 84.5% |
| 3927984 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.51 | 47.0 | 4.58e-01 | 99.1% | 100.0% |
| 3942852 | 3636.1.1.0 ↗ | a+b two layers › XPD arch domain › XPD arch domain › XPD arch domain | 0.51 | 40.0 | 3.46e-01 | 85.7% | 98.9% |
D2
high
residues 452-651
Domain cluster:
rep: LD_Run2_08_scaffold_35_prodigal-single.1__X__X__00177__D121-323
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00437.27 best | T2SSE | 144.6 | 4.40e-42 | 95.5% | 37.8% |
D3
medium
residues 652-703
Domain cluster:
representative
CATH (18)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1tfkB00 | 1.20.120.650 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Colicin D | 0.69 | 48.0 | 4.11e-01 | 75.0% | 90.7% |
| 3woyA00 | 1.25.10.10 | Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant | 0.67 | 55.0 | 3.60e-01 | 96.2% | 37.0% |
| 4fcyB02 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.66 | 51.0 | 4.89e-01 | 90.4% | 90.8% |
| 4d7rA01 | 1.10.220.20 | Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › | 0.63 | 49.0 | 4.36e-01 | 90.4% | 67.1% |
| 4nqwB00 | 1.10.10.1320 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Anti-sigma factor, zinc-finger domain | 0.62 | 48.0 | 4.40e-01 | 90.4% | 68.5% |
| 2lefA00 | 1.10.30.10 | Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain | 0.61 | 41.0 | 3.57e-01 | 71.2% | 66.3% |
| 3fajA00 | 1.20.120.950 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Uncharacterised protein DUF5062 | 0.61 | 49.0 | 3.95e-01 | 88.5% | 68.3% |
| 3g2mA02 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.60 | 51.0 | 3.67e-01 | 100.0% | 50.9% |
| 3iprA00 | 3.40.50.510 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphotransferase system, mannose-type IIA component | 0.60 | 50.0 | 3.80e-01 | 100.0% | 56.2% |
| 1uouA01 | 1.20.970.10 | Mainly Alpha › Up-down Bundle › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C | 0.58 | 48.0 | 4.48e-01 | 98.1% | 77.9% |
| 1njrA00 | 3.40.220.10 | Alpha Beta › 3-Layer(aba) Sandwich › Leucine Aminopeptidase, subunit E; domain 1 › Leucine Aminopeptidase, subunit E, domain 1 | 0.56 | 40.0 | 2.65e-01 | 78.8% | 39.8% |
| 1wekF01 | 3.40.50.450 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.54 | 45.0 | 3.14e-01 | 100.0% | 46.9% |
| 1rhcA00 | 3.20.20.30 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Luciferase-like domain | 0.54 | 43.0 | 2.68e-01 | 94.2% | 15.5% |
| 2f48A03 | 1.10.10.480 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Phosphofructokinase; domain 3 | 0.52 | 44.0 | 3.93e-01 | 96.2% | 82.7% |
| 3foaB01 | 3.40.50.11780 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.51 | 43.0 | 2.91e-01 | 100.0% | 59.5% |
| 3b4yA00 | 3.20.20.30 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Luciferase-like domain | 0.51 | 39.0 | 2.53e-01 | 94.2% | 30.4% |
| 1yz4B01 | 3.90.190.10 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily | 0.51 | 38.0 | 2.90e-01 | 90.4% | 35.9% |
| 4c1uA02 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.50 | 37.0 | 2.62e-01 | 94.2% | 21.8% |
ECOD (11)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 54476 | 601.5.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › Colicin D immunity protein › Colicin D immunity protein | 0.69 | 49.0 | 4.14e-01 | 75.0% | 91.8% |
| 5008229 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.68 | 49.0 | 4.39e-01 | 78.8% | 74.7% |
| 5046132 | 2003.1.5.81 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 | 0.60 | 50.0 | 3.30e-01 | 100.0% | 33.7% |
| 3217903 | 109.1.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › Glutathione S-transferase (GST)-C › Glutathione S-transferase (GST)-C | 0.60 | 49.0 | 4.08e-01 | 92.3% | 68.4% |
| 5077614 | 182.1.3.3 ↗ | alpha complex topology › Cryptochrome/photolyase FAD-binding domain-related › Cryptochrome/photolyase FAD-binding domain-related › PriX › DNA_primase_lrg | 0.57 | 41.0 | 3.79e-01 | 82.7% | 58.7% |
| 4974312 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.54 | 38.0 | 3.86e-01 | 75.0% | 88.0% |
| 4133673 | 2002.1.1.117 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › UxuA | 0.54 | 42.0 | 2.59e-01 | 92.3% | 18.0% |
| 3981275 | 2002.1.1.0 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels | 0.54 | 42.0 | 2.59e-01 | 92.3% | 18.2% |
| 3483981 | 633.1.1.0 ↗ | alpha bundles › Bromodomain-like › Bromodomain › Bromodomain | 0.52 | 41.0 | 3.33e-01 | 96.2% | 85.2% |
| 4302620 | 282.1.1.1 ↗ | a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS | 0.52 | 35.0 | 2.47e-01 | 76.9% | 21.1% |
| 4610562 | 2002.1.1.117 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › UxuA | 0.51 | 40.0 | 2.51e-01 | 100.0% | 31.3% |