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SRR1747018_scaffold_0_prodigal-single.1__X__X__00167
Bact-VirSRR1747018_scaffold_0_prodigal-single.1__X__X__00167
Identity
- Kingdom:
- phage
Quality
54.5
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-74
Domain cluster:
representative
CATH (47)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5dlqB01 | 1.25.10.10 | Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant | 0.79 | 68.0 | 4.19e-01 | 95.9% | 17.6% |
| 2pftA00 | 1.20.1280.170 | Mainly Alpha › Up-down Bundle › Monooxygenase › Exocyst complex component Exo70 | 0.78 | 70.0 | 4.14e-01 | 100.0% | 21.4% |
| 6tblB01 | 1.25.10.10 | Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant | 0.76 | 67.0 | 5.86e-01 | 100.0% | 66.7% |
| 8h6rA01 | 1.20.930.10 | Mainly Alpha › Up-down Bundle › Transcription Elongation Factor S-II; Chain A › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 | 0.75 | 67.0 | 6.42e-01 | 98.6% | 97.6% |
| 4rngC00 | 1.20.1280.290 | Mainly Alpha › Up-down Bundle › Monooxygenase › | 0.75 | 57.0 | 5.48e-01 | 80.8% | 83.1% |
| 2i0mA01 | 1.20.58.220 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 | 0.72 | 54.0 | 4.77e-01 | 80.8% | 82.1% |
| 4qndA00 | 1.20.1280.290 | Mainly Alpha › Up-down Bundle › Monooxygenase › | 0.71 | 53.0 | 4.85e-01 | 79.5% | 73.2% |
| 1sumB01 | 1.20.58.220 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 | 0.70 | 53.0 | 4.68e-01 | 80.8% | 83.2% |
| 6z74C02 | 1.20.120.530 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › GntR ligand-binding domain-like | 0.70 | 51.0 | 3.95e-01 | 76.7% | 74.8% |
| 3nvoB02 | 1.20.58.340 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Magnesium transport protein CorA, transmembrane region | 0.68 | 51.0 | 4.43e-01 | 80.8% | 79.3% |
| 2ygwA01 | 1.20.140.90 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Malonyl-CoA decarboxylase, oligemerization domain | 0.68 | 59.0 | 4.73e-01 | 100.0% | 77.8% |
| 3bjdA01 | 1.10.1240.20 | Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Lytic transglycosylase, superhelical linker domain | 0.68 | 58.0 | 5.54e-01 | 98.6% | 87.5% |
| 2c5iT00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.68 | 49.0 | 4.60e-01 | 78.1% | 91.5% |
| 4g12A02 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.68 | 53.0 | 4.27e-01 | 86.3% | 69.8% |
| 2jqqA00 | 1.20.58.1240 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.68 | 59.0 | 4.71e-01 | 100.0% | 68.8% |
| 6a6fA00 | 3.90.1010.10 | Alpha Beta › Alpha-Beta Complex › Sufe protein. Chain: A › | 0.67 | 50.0 | 4.11e-01 | 80.8% | 96.3% |
| 1rz4A01 | 1.25.40.250 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › ARM repeat; domain 1 | 0.66 | 53.0 | 4.61e-01 | 100.0% | 55.8% |
| 2mtqA00 | 1.20.58.130 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.66 | 49.0 | 4.90e-01 | 80.8% | 87.7% |
| 4dlqA02 | 1.25.40.610 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.65 | 56.0 | 5.17e-01 | 98.6% | 88.4% |
| 3adoA01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.65 | 52.0 | 3.90e-01 | 97.3% | 34.4% |
| 6s8bA01 | 1.10.520.30 | Mainly Alpha › Orthogonal Bundle › Peroxidase; domain 1 › AF1862-like domain | 0.64 | 46.0 | 3.69e-01 | 76.7% | 99.3% |
| 5jrcA00 | 1.20.58.2140 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.64 | 55.0 | 4.20e-01 | 100.0% | 73.1% |
| 3rh2A00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.63 | 51.0 | 3.74e-01 | 90.4% | 53.6% |
| 5ab0C04 | 1.25.50.20 | Mainly Alpha › Alpha Horseshoe › Zincin-like fold › | 0.63 | 55.0 | 3.60e-01 | 100.0% | 31.0% |
| 2guzA00 | 1.10.287.110 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › DnaJ domain | 0.62 | 42.0 | 4.34e-01 | 71.2% | 77.5% |
| 4gpkB01 | 1.25.40.1000 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.62 | 50.0 | 4.52e-01 | 94.5% | 64.6% |
| 6k9pB02 | 1.20.1300.20 | Mainly Alpha › Up-down Bundle › 3 helical TM bundles of succinate and fumarate reductases › Peptidase C65 Otubain, subdomain 2 | 0.62 | 45.0 | 3.58e-01 | 78.1% | 40.8% |
| 2ckwA04 | 1.20.960.20 | Mainly Alpha › Up-down Bundle › Mitochondrial Import Receptor Subunit Tom20; Chain A › | 0.60 | 52.0 | 4.65e-01 | 100.0% | 72.9% |
| 4jbeB01 | 3.40.605.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 | 0.60 | 46.0 | 3.19e-01 | 100.0% | 22.8% |
| 1yy7A02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.60 | 50.0 | 4.59e-01 | 100.0% | 91.4% |
| 2a0uB01 | 1.20.120.420 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › translation initiation factor eif-2b, domain 1 | 0.57 | 49.0 | 3.90e-01 | 100.0% | 61.9% |
| 2b8iA00 | 1.20.1280.100 | Mainly Alpha › Up-down Bundle › Monooxygenase › Pas factor, saposin domain | 0.57 | 40.0 | 4.02e-01 | 79.5% | 71.4% |
| 1dgfA03 | 1.20.1370.60 | Mainly Alpha › Up-down Bundle › Hemocyanin, N-terminal domain › | 0.57 | 46.0 | 4.05e-01 | 90.4% | 92.1% |
| 2qsbA00 | 1.20.1440.50 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Ta0600-like | 0.57 | 49.0 | 4.68e-01 | 94.5% | 84.7% |
| 1dm1A00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.56 | 47.0 | 3.86e-01 | 95.9% | 55.5% |
| 7cjsB01 | 1.20.1080.10 | Mainly Alpha › Up-down Bundle › Glycerol uptake facilitator protein › Glycerol uptake facilitator protein. | 0.56 | 45.0 | 3.33e-01 | 91.8% | 77.0% |
| 1jr8A00 | 1.20.120.310 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › ERV/ALR sulfhydryl oxidase domain | 0.56 | 42.0 | 3.73e-01 | 80.8% | 61.0% |
| 1iqpA03 | 1.20.272.10 | Mainly Alpha › Up-down Bundle › Zinc Finger, Delta Prime; domain 3 › | 0.56 | 40.0 | 3.75e-01 | 78.1% | 95.7% |
| 1rc2A00 | 1.20.1080.10 | Mainly Alpha › Up-down Bundle › Glycerol uptake facilitator protein › Glycerol uptake facilitator protein. | 0.54 | 45.0 | 3.28e-01 | 97.3% | 78.8% |
| 3anwB00 | 1.20.58.2050 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.53 | 43.0 | 3.46e-01 | 93.2% | 63.0% |
| 4aciA00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.53 | 43.0 | 3.28e-01 | 90.4% | 75.0% |
| 2fu2A00 | 1.20.1440.50 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Ta0600-like | 0.53 | 45.0 | 4.45e-01 | 94.5% | 91.0% |
| 1dtoA01 | 1.10.287.30 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › E2 (early) protein, N terminal domain, subdomain 1 | 0.52 | 40.0 | 3.66e-01 | 84.9% | 99.0% |
| 2vpzC00 | 1.20.1630.10 | Mainly Alpha › Up-down Bundle › Formate dehydrogenase/DMSO reductase fold › Formate dehydrogenase/DMSO reductase domain | 0.52 | 46.0 | 3.21e-01 | 100.0% | 76.0% |
| 3gfzB02 | 3.20.20.450 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › EAL domain | 0.52 | 44.0 | 3.11e-01 | 100.0% | 31.1% |
| 3l4aA00 | 1.10.238.20 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › Pheromone/general odorant binding protein domain | 0.52 | 39.0 | 3.38e-01 | 82.2% | 77.7% |
| 2dodA00 | 1.10.10.440 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › FF domain | 0.51 | 38.0 | 3.66e-01 | 78.1% | 80.5% |
ECOD (47)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3245002 | 109.4.1.3465 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Cnd1, PF26777, PF26779 | 0.86 | 80.0 | 4.28e-01 | 100.0% | 5.5% |
| 3799959 | 109.4.1.623 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Cnd1 | 0.84 | 77.0 | 4.70e-01 | 100.0% | 17.4% |
| 3628731 | 109.4.1.2458 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT, Cnd1, PF26777, PF26778 | 0.84 | 77.0 | 4.19e-01 | 100.0% | 6.4% |
| 3586217 | 109.4.1.2011 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Cnd1, PF26778 | 0.84 | 77.0 | 4.67e-01 | 100.0% | 17.7% |
| 4003393 | 109.4.1.1517 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Cnd1, PF26778, PF26779 | 0.84 | 77.0 | 4.14e-01 | 100.0% | 5.9% |
| 3934948 | 109.4.1.1517 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Cnd1, PF26778, PF26779 | 0.82 | 75.0 | 4.06e-01 | 100.0% | 5.8% |
| 3413962 | 109.4.1.1392 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › IBN_N, TPR_XPO7 | 0.81 | 74.0 | 4.04e-01 | 100.0% | 6.6% |
| 3929469 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.78 | 71.0 | 5.13e-01 | 100.0% | 38.5% |
| 3207445 | 109.4.1.548 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TIP120 | 0.78 | 70.0 | 5.71e-01 | 100.0% | 63.0% |
| 3554103 | 109.4.1.576 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Exportin-5 | 0.78 | 68.0 | 4.40e-01 | 97.3% | 29.1% |
| 3783200 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.78 | 68.0 | 3.68e-01 | 100.0% | 5.6% |
| 3350471 | 109.4.1.427 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › SDA1_HEAT | 0.76 | 68.0 | 4.96e-01 | 100.0% | 49.2% |
| 3659912 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.76 | 68.0 | 4.88e-01 | 100.0% | 36.1% |
| 3724028 | 109.3.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat | 0.76 | 65.0 | 4.06e-01 | 100.0% | 17.9% |
| 4470602 | 109.4.1.427 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › SDA1_HEAT | 0.75 | 66.0 | 4.89e-01 | 100.0% | 42.6% |
| None | — | 0.75 | 65.0 | 3.85e-01 | 100.0% | 12.4% | |
| None | — | 0.75 | 65.0 | 3.88e-01 | 100.0% | 13.0% | |
| 4000426 | 109.4.1.1219 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_Mybbp1a | 0.75 | 66.0 | 4.21e-01 | 100.0% | 23.7% |
| 3664306 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.74 | 66.0 | 5.26e-01 | 100.0% | 52.7% |
| 3651618 | 109.4.1.425 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › DUF707 | 0.74 | 66.0 | 4.74e-01 | 100.0% | 37.1% |
| 3649876 | 611.3.1.11 ↗ | alpha bundles › N-cbl like › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 › TOR1L1_N | 0.74 | 65.0 | 6.54e-01 | 100.0% | 98.7% |
| 3875282 | 109.4.1.953 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT_MROH2B_1st | 0.73 | 65.0 | 4.72e-01 | 100.0% | 38.5% |
| 3775164 | 109.4.1.1871 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › DNA_pol_phi, PF26720 | 0.73 | 65.0 | 4.06e-01 | 100.0% | 20.8% |
| 3782685 | 109.4.1.70 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › CID | 0.71 | 62.0 | 5.14e-01 | 100.0% | 63.0% |
| 4471046 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.71 | 62.0 | 3.90e-01 | 98.6% | 18.5% |
| 3421659 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.71 | 62.0 | 4.49e-01 | 100.0% | 40.0% |
| 3921469 | 109.4.1.908 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_DOP1 | 0.70 | 62.0 | 4.32e-01 | 100.0% | 45.0% |
| 3614116 | 109.34.1.2 ↗ | alpha superhelices › Repetitive alpha hairpins › 26S proteasome subunit Rpn2 N-terminal domain › 26S proteasome subunit Rpn2 N-terminal domain › RPN2_N | 0.70 | 62.0 | 4.08e-01 | 100.0% | 24.5% |
| 3744318 | 109.4.1.583 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › DNA_pol_phi | 0.70 | 61.0 | 4.38e-01 | 100.0% | 52.3% |
| 3665740 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.69 | 61.0 | 4.55e-01 | 100.0% | 43.8% |
| 3173970 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.68 | 59.0 | 4.58e-01 | 100.0% | 43.5% |
| 3627404 | 109.4.1.22 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Adaptin_N | 0.68 | 59.0 | 4.33e-01 | 100.0% | 81.0% |
| 3334627 | 109.4.1.910 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT_MROH2B_C | 0.67 | 57.0 | 4.87e-01 | 100.0% | 62.4% |
| 5002387 | 4121.1.1.1 ↗ | a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like › CorA | 0.66 | 59.0 | 3.94e-01 | 100.0% | 55.4% |
| 3721897 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.66 | 57.0 | 3.94e-01 | 100.0% | 27.0% |
| 3658953 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.66 | 57.0 | 4.91e-01 | 100.0% | 61.7% |
| 3666476 | 109.4.1.420 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR | 0.63 | 51.0 | 4.21e-01 | 100.0% | 47.6% |
| 3245537 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.62 | 46.0 | 4.30e-01 | 82.2% | 85.3% |
| 4947640 | 4121.1.1.1 ↗ | a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like › CorA | 0.60 | 48.0 | 3.41e-01 | 91.8% | 62.0% |
| 3214666 | 109.3.1.358 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Otopetrin | 0.60 | 45.0 | 3.30e-01 | 82.2% | 80.5% |
| 4680911 | 4198.1.1.0 ↗ | alpha arrays › TerB-like › TerB-like › TerB-like | 0.59 | 50.0 | 4.18e-01 | 100.0% | 82.1% |
| 3965783 | 3758.2.1.1 ↗ | alpha bundles › Bacterial hemolysins-like › Biopolymer transport protein ExbB › Biopolymer transport protein ExbB › MotA_ExbB | 0.59 | 44.0 | 3.22e-01 | 82.2% | 81.4% |
| 4979232 | 3930.1.1.0 ↗ | alpha bundles › Helical bundle insertion in helicase domains › Helical bundle in Hef helicase › Helical bundle in Hef helicase | 0.58 | 46.0 | 3.86e-01 | 90.4% | 65.9% |
| 3406232 | 174.1.1.1 ↗ | few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin | 0.56 | 50.0 | 3.99e-01 | 95.9% | 80.6% |
| 3999160 | 2004.1.1.542 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_5, AAA_7 | 0.56 | 48.0 | 2.88e-01 | 100.0% | 18.3% |
| 3570499 | 604.1.1.95 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › KIAA1755_C | 0.53 | 40.0 | 3.73e-01 | 84.9% | 86.3% |
| 3254770 | 4967.1.1.0 ↗ | alpha bundles › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases | 0.51 | 35.0 | 3.22e-01 | 83.6% | 51.4% |
D2
medium
residues 104-205