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SRR1747018_scaffold_0_prodigal-single.1__X__X__00172
Bact-VirSRR1747018_scaffold_0_prodigal-single.1__X__X__00172
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 142-200
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01025.25 best | GrpE | 44.7 | 1.60e-11 | 98.3% | 33.9% |
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1dkgB02 | 2.30.22.10 | Mainly Beta › Roll › Nucleotide Exchange Factor Grpe; Chain A, domain 2 › Head domain of nucleotide exchange factor GrpE | 0.79 | 68.0 | 6.90e-01 | 98.3% | 100.0% |
| 3a6mA02 | 2.30.22.10 | Mainly Beta › Roll › Nucleotide Exchange Factor Grpe; Chain A, domain 2 › Head domain of nucleotide exchange factor GrpE | 0.77 | 64.0 | 6.57e-01 | 100.0% | 96.5% |
| 2oc3A00 | 3.90.190.10 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily | 0.51 | 31.0 | 2.10e-01 | 93.2% | 12.5% |
| 2kt7A01 | 3.10.20.320 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Putative peptidoglycan bound protein (lpxtg motif) | 0.50 | 33.0 | 3.05e-01 | 100.0% | 48.2% |
ECOD (48)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4203603 | 706.1.1.1 ↗ | beta complex topology › Head domain of nucleotide exchange factor GrpE › Head domain of nucleotide exchange factor GrpE › Head domain of nucleotide exchange factor GrpE › GrpE | 0.94 | 86.0 | 8.72e-01 | 98.3% | 100.0% |
| 4043139 | 706.1.1.1 ↗ | beta complex topology › Head domain of nucleotide exchange factor GrpE › Head domain of nucleotide exchange factor GrpE › Head domain of nucleotide exchange factor GrpE › GrpE | 0.93 | 79.0 | 8.36e-01 | 93.2% | 100.0% |
| 4945386 | 706.1.1.0 ↗ | beta complex topology › Head domain of nucleotide exchange factor GrpE › Head domain of nucleotide exchange factor GrpE › Head domain of nucleotide exchange factor GrpE | 0.93 | 87.0 | 8.72e-01 | 100.0% | 98.3% |
| 4124894 | 706.1.1.1 ↗ | beta complex topology › Head domain of nucleotide exchange factor GrpE › Head domain of nucleotide exchange factor GrpE › Head domain of nucleotide exchange factor GrpE › GrpE | 0.91 | 79.0 | 8.14e-01 | 94.9% | 98.2% |
| 4083033 | 706.1.1.1 ↗ | beta complex topology › Head domain of nucleotide exchange factor GrpE › Head domain of nucleotide exchange factor GrpE › Head domain of nucleotide exchange factor GrpE › GrpE | 0.90 | 78.0 | 8.10e-01 | 94.9% | 100.0% |
| 4094227 | 706.1.1.1 ↗ | beta complex topology › Head domain of nucleotide exchange factor GrpE › Head domain of nucleotide exchange factor GrpE › Head domain of nucleotide exchange factor GrpE › GrpE | 0.90 | 81.0 | 8.16e-01 | 96.6% | 98.3% |
| 5061516 | 706.1.1.1 ↗ | beta complex topology › Head domain of nucleotide exchange factor GrpE › Head domain of nucleotide exchange factor GrpE › Head domain of nucleotide exchange factor GrpE › GrpE | 0.90 | 78.0 | 8.05e-01 | 94.9% | 100.0% |
| 3596541 | 706.1.1.0 ↗ | beta complex topology › Head domain of nucleotide exchange factor GrpE › Head domain of nucleotide exchange factor GrpE › Head domain of nucleotide exchange factor GrpE | 0.90 | 82.0 | 8.19e-01 | 98.3% | 98.3% |
| 4484233 | 706.1.1.1 ↗ | beta complex topology › Head domain of nucleotide exchange factor GrpE › Head domain of nucleotide exchange factor GrpE › Head domain of nucleotide exchange factor GrpE › GrpE | 0.89 | 77.0 | 7.93e-01 | 93.2% | 100.0% |
| 3610994 | 706.1.1.1 ↗ | beta complex topology › Head domain of nucleotide exchange factor GrpE › Head domain of nucleotide exchange factor GrpE › Head domain of nucleotide exchange factor GrpE › GrpE | 0.88 | 80.0 | 7.99e-01 | 98.3% | 98.3% |
| 4976007 | 706.1.1.1 ↗ | beta complex topology › Head domain of nucleotide exchange factor GrpE › Head domain of nucleotide exchange factor GrpE › Head domain of nucleotide exchange factor GrpE › GrpE | 0.88 | 78.0 | 7.04e-01 | 100.0% | 72.5% |
| 4967038 | 706.1.1.1 ↗ | beta complex topology › Head domain of nucleotide exchange factor GrpE › Head domain of nucleotide exchange factor GrpE › Head domain of nucleotide exchange factor GrpE › GrpE | 0.88 | 77.0 | 7.70e-01 | 100.0% | 95.0% |
| 4644405 | 706.1.1.1 ↗ | beta complex topology › Head domain of nucleotide exchange factor GrpE › Head domain of nucleotide exchange factor GrpE › Head domain of nucleotide exchange factor GrpE › GrpE | 0.88 | 75.0 | 7.80e-01 | 94.9% | 100.0% |
| 4445928 | 706.1.1.1 ↗ | beta complex topology › Head domain of nucleotide exchange factor GrpE › Head domain of nucleotide exchange factor GrpE › Head domain of nucleotide exchange factor GrpE › GrpE | 0.87 | 78.0 | 5.69e-01 | 100.0% | 38.7% |
| 4599975 | 706.1.1.0 ↗ | beta complex topology › Head domain of nucleotide exchange factor GrpE › Head domain of nucleotide exchange factor GrpE › Head domain of nucleotide exchange factor GrpE | 0.87 | 78.0 | 7.78e-01 | 96.6% | 100.0% |
| 5047913 | 706.1.1.1 ↗ | beta complex topology › Head domain of nucleotide exchange factor GrpE › Head domain of nucleotide exchange factor GrpE › Head domain of nucleotide exchange factor GrpE › GrpE | 0.87 | 77.0 | 7.73e-01 | 100.0% | 96.7% |
| 4662976 | 706.1.1.0 ↗ | beta complex topology › Head domain of nucleotide exchange factor GrpE › Head domain of nucleotide exchange factor GrpE › Head domain of nucleotide exchange factor GrpE | 0.87 | 74.0 | 7.65e-01 | 96.6% | 100.0% |
| 4502174 | 605.1.1.108 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › GrpE | 0.87 | 79.0 | 6.22e-01 | 100.0% | 51.3% |
| 3634825 | 706.1.1.1 ↗ | beta complex topology › Head domain of nucleotide exchange factor GrpE › Head domain of nucleotide exchange factor GrpE › Head domain of nucleotide exchange factor GrpE › GrpE | 0.87 | 76.0 | 7.47e-01 | 96.6% | 98.4% |
| 4532990 | 706.1.1.1 ↗ | beta complex topology › Head domain of nucleotide exchange factor GrpE › Head domain of nucleotide exchange factor GrpE › Head domain of nucleotide exchange factor GrpE › GrpE | 0.86 | 77.0 | 7.73e-01 | 98.3% | 96.7% |
| 4662808 | 706.1.1.1 ↗ | beta complex topology › Head domain of nucleotide exchange factor GrpE › Head domain of nucleotide exchange factor GrpE › Head domain of nucleotide exchange factor GrpE › GrpE | 0.86 | 78.0 | 7.58e-01 | 100.0% | 90.8% |
| 4402754 | 706.1.1.1 ↗ | beta complex topology › Head domain of nucleotide exchange factor GrpE › Head domain of nucleotide exchange factor GrpE › Head domain of nucleotide exchange factor GrpE › GrpE | 0.86 | 77.0 | 7.76e-01 | 100.0% | 98.3% |
| 4046571 | 706.1.1.1 ↗ | beta complex topology › Head domain of nucleotide exchange factor GrpE › Head domain of nucleotide exchange factor GrpE › Head domain of nucleotide exchange factor GrpE › GrpE | 0.86 | 76.0 | 7.64e-01 | 100.0% | 96.7% |
| 4503625 | 706.1.1.1 ↗ | beta complex topology › Head domain of nucleotide exchange factor GrpE › Head domain of nucleotide exchange factor GrpE › Head domain of nucleotide exchange factor GrpE › GrpE | 0.86 | 78.0 | 6.05e-01 | 100.0% | 48.0% |
| 5084043 | 706.1.1.1 ↗ | beta complex topology › Head domain of nucleotide exchange factor GrpE › Head domain of nucleotide exchange factor GrpE › Head domain of nucleotide exchange factor GrpE › GrpE | 0.86 | 73.0 | 7.52e-01 | 94.9% | 100.0% |
| 4428959 | 3939.1.1.145 ↗ | alpha duplicates or obligate multimers › XRCC4 C-terminal oligomerization domain › XRCC4 C-terminal oligomerization domain › XRCC4 C-terminal oligomerization domain › GrpE | 0.85 | 76.0 | 5.73e-01 | 98.3% | 43.0% |
| 4328747 | 148.1.3.209 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › GrpE | 0.85 | 77.0 | 6.11e-01 | 100.0% | 51.8% |
| 4053915 | 706.1.1.1 ↗ | beta complex topology › Head domain of nucleotide exchange factor GrpE › Head domain of nucleotide exchange factor GrpE › Head domain of nucleotide exchange factor GrpE › GrpE | 0.85 | 76.0 | 7.65e-01 | 100.0% | 100.0% |
| 3205739 | 706.1.1.1 ↗ | beta complex topology › Head domain of nucleotide exchange factor GrpE › Head domain of nucleotide exchange factor GrpE › Head domain of nucleotide exchange factor GrpE › GrpE | 0.84 | 72.0 | 7.18e-01 | 93.2% | 100.0% |
| 4139514 | 605.1.1.108 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › GrpE | 0.83 | 71.0 | 5.25e-01 | 94.9% | 38.0% |
| 4101994 | 706.1.1.1 ↗ | beta complex topology › Head domain of nucleotide exchange factor GrpE › Head domain of nucleotide exchange factor GrpE › Head domain of nucleotide exchange factor GrpE › GrpE | 0.83 | 77.0 | 7.43e-01 | 100.0% | 96.9% |
| 4128211 | 706.1.1.1 ↗ | beta complex topology › Head domain of nucleotide exchange factor GrpE › Head domain of nucleotide exchange factor GrpE › Head domain of nucleotide exchange factor GrpE › GrpE | 0.83 | 73.0 | 7.38e-01 | 98.3% | 100.0% |
| 3540230 | 706.1.1.1 ↗ | beta complex topology › Head domain of nucleotide exchange factor GrpE › Head domain of nucleotide exchange factor GrpE › Head domain of nucleotide exchange factor GrpE › GrpE | 0.83 | 74.0 | 7.42e-01 | 100.0% | 100.0% |
| 3461415 | 706.1.1.3 ↗ | beta complex topology › Head domain of nucleotide exchange factor GrpE › Head domain of nucleotide exchange factor GrpE › Head domain of nucleotide exchange factor GrpE › GIL1_IRKI_C | 0.82 | 72.0 | 7.52e-01 | 94.9% | 100.0% |
| 3360551 | 706.1.1.3 ↗ | beta complex topology › Head domain of nucleotide exchange factor GrpE › Head domain of nucleotide exchange factor GrpE › Head domain of nucleotide exchange factor GrpE › GIL1_IRKI_C | 0.82 | 72.0 | 7.46e-01 | 94.9% | 100.0% |
| 4300671 | 148.1.3.209 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › GrpE | 0.81 | 71.0 | 5.69e-01 | 98.3% | 50.4% |
| 4606810 | 706.1.1.1 ↗ | beta complex topology › Head domain of nucleotide exchange factor GrpE › Head domain of nucleotide exchange factor GrpE › Head domain of nucleotide exchange factor GrpE › GrpE | 0.81 | 71.0 | 5.37e-01 | 98.3% | 41.4% |
| 3643817 | 706.1.1.1 ↗ | beta complex topology › Head domain of nucleotide exchange factor GrpE › Head domain of nucleotide exchange factor GrpE › Head domain of nucleotide exchange factor GrpE › GrpE | 0.81 | 72.0 | 7.17e-01 | 100.0% | 98.3% |
| 3303359 | 706.1.1.3 ↗ | beta complex topology › Head domain of nucleotide exchange factor GrpE › Head domain of nucleotide exchange factor GrpE › Head domain of nucleotide exchange factor GrpE › GIL1_IRKI_C | 0.81 | 71.0 | 4.90e-01 | 94.9% | 32.4% |
| 5035485 | 706.1.1.1 ↗ | beta complex topology › Head domain of nucleotide exchange factor GrpE › Head domain of nucleotide exchange factor GrpE › Head domain of nucleotide exchange factor GrpE › GrpE | 0.80 | 73.0 | 5.72e-01 | 100.0% | 50.0% |
| 4487102 | 706.1.1.1 ↗ | beta complex topology › Head domain of nucleotide exchange factor GrpE › Head domain of nucleotide exchange factor GrpE › Head domain of nucleotide exchange factor GrpE › GrpE | 0.79 | 68.0 | 5.50e-01 | 94.9% | 50.9% |
| 3991914 | 706.1.1.1 ↗ | beta complex topology › Head domain of nucleotide exchange factor GrpE › Head domain of nucleotide exchange factor GrpE › Head domain of nucleotide exchange factor GrpE › GrpE | 0.79 | 71.0 | 7.15e-01 | 100.0% | 98.3% |
| 3428698 | 706.1.1.3 ↗ | beta complex topology › Head domain of nucleotide exchange factor GrpE › Head domain of nucleotide exchange factor GrpE › Head domain of nucleotide exchange factor GrpE › GIL1_IRKI_C | 0.79 | 69.0 | 4.47e-01 | 94.9% | 23.9% |
| 3961517 | 706.1.1.1 ↗ | beta complex topology › Head domain of nucleotide exchange factor GrpE › Head domain of nucleotide exchange factor GrpE › Head domain of nucleotide exchange factor GrpE › GrpE | 0.79 | 71.0 | 7.11e-01 | 100.0% | 100.0% |
| 3453929 | 706.1.1.3 ↗ | beta complex topology › Head domain of nucleotide exchange factor GrpE › Head domain of nucleotide exchange factor GrpE › Head domain of nucleotide exchange factor GrpE › GIL1_IRKI_C | 0.78 | 72.0 | 7.18e-01 | 98.3% | 100.0% |
| 3841269 | 706.1.1.2 ↗ | beta complex topology › Head domain of nucleotide exchange factor GrpE › Head domain of nucleotide exchange factor GrpE › Head domain of nucleotide exchange factor GrpE › MIEAP | 0.78 | 66.0 | 6.85e-01 | 98.3% | 100.0% |
| 4360491 | 148.1.3.209 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › GrpE | 0.78 | 70.0 | 5.20e-01 | 100.0% | 41.4% |
| 4518217 | 706.1.1.1 ↗ | beta complex topology › Head domain of nucleotide exchange factor GrpE › Head domain of nucleotide exchange factor GrpE › Head domain of nucleotide exchange factor GrpE › GrpE | 0.78 | 70.0 | 5.25e-01 | 100.0% | 72.9% |
D2
medium
residues 48-108
Domain cluster:
representative