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SRR1747018_scaffold_0_prodigal-single.1__X__X__00195
Bact-VirSRR1747018_scaffold_0_prodigal-single.1__X__X__00195
Identity
- Kingdom:
- phage
Quality
70.1
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 29-114
Domain cluster:
rep: js4906-29-5_S40_scaffold_9_prodigal-single.1__X__X__00027__D51-117
CATH (7)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1wvoA00 | 3.90.1210.10 | Alpha Beta › Alpha-Beta Complex › Type Iii Antifreeze Protein Isoform Hplc 12 › Antifreeze-like/N-acetylneuraminic acid synthase C-terminal domain | 0.81 | 59.0 | 6.15e-01 | 81.4% | 82.3% |
| 3frnA02 | 3.90.1210.10 | Alpha Beta › Alpha-Beta Complex › Type Iii Antifreeze Protein Isoform Hplc 12 › Antifreeze-like/N-acetylneuraminic acid synthase C-terminal domain | 0.80 | 58.0 | 6.51e-01 | 76.7% | 95.6% |
| 1ameA00 | 3.90.1210.10 | Alpha Beta › Alpha-Beta Complex › Type Iii Antifreeze Protein Isoform Hplc 12 › Antifreeze-like/N-acetylneuraminic acid synthase C-terminal domain | 0.78 | 54.0 | 6.09e-01 | 76.7% | 93.9% |
| 2wqpA02 | 3.90.1210.10 | Alpha Beta › Alpha-Beta Complex › Type Iii Antifreeze Protein Isoform Hplc 12 › Antifreeze-like/N-acetylneuraminic acid synthase C-terminal domain | 0.77 | 60.0 | 6.45e-01 | 84.9% | 97.3% |
| 3g8rA02 | 3.90.1210.10 | Alpha Beta › Alpha-Beta Complex › Type Iii Antifreeze Protein Isoform Hplc 12 › Antifreeze-like/N-acetylneuraminic acid synthase C-terminal domain | 0.76 | 56.0 | 5.75e-01 | 80.2% | 81.5% |
| 1vliA02 | 3.90.1210.10 | Alpha Beta › Alpha-Beta Complex › Type Iii Antifreeze Protein Isoform Hplc 12 › Antifreeze-like/N-acetylneuraminic acid synthase C-terminal domain | 0.74 | 51.0 | 5.82e-01 | 73.3% | 95.4% |
| 5awwY00 | 1.10.3370.10 | Mainly Alpha › Orthogonal Bundle › Preprotein translocase SecY subunit › SecY subunit domain | 0.53 | 47.0 | 3.02e-01 | 98.8% | 32.8% |
ECOD (25)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3972515 | 70.3.1.3 ↗ | beta barrels › beta-clip › SET domain-like › SET domain-like › SAF | 0.89 | 60.0 | 7.15e-01 | 73.3% | 100.0% |
| 3386541 | 70.3.1.18 ↗ | beta barrels › beta-clip › SET domain-like › SET domain-like › ChapFlgA | 0.87 | 63.0 | 7.13e-01 | 76.7% | 98.5% |
| 3840012 | 70.3.1.18 ↗ | beta barrels › beta-clip › SET domain-like › SET domain-like › ChapFlgA | 0.87 | 59.0 | 6.98e-01 | 73.3% | 100.0% |
| 4268048 | 70.3.1.3 ↗ | beta barrels › beta-clip › SET domain-like › SET domain-like › SAF | 0.84 | 59.0 | 6.69e-01 | 75.6% | 95.4% |
| 1395523 | 70.3.1.18 ↗ | beta barrels › beta-clip › SET domain-like › SET domain-like › ChapFlgA | 0.83 | 59.0 | 6.72e-01 | 74.4% | 96.9% |
| 4046971 | 70.3.1.3 ↗ | beta barrels › beta-clip › SET domain-like › SET domain-like › SAF | 0.83 | 60.0 | 6.78e-01 | 75.6% | 98.5% |
| 1005319 | 70.3.1.3 ↗ | beta barrels › beta-clip › SET domain-like › SET domain-like › SAF | 0.82 | 59.0 | 6.67e-01 | 76.7% | 98.5% |
| 5078504 | 70.3.1.3 ↗ | beta barrels › beta-clip › SET domain-like › SET domain-like › SAF | 0.82 | 55.0 | 6.28e-01 | 75.6% | 92.3% |
| 185265 | 70.3.1.3 ↗ | beta barrels › beta-clip › SET domain-like › SET domain-like › SAF | 0.81 | 58.0 | 6.60e-01 | 75.6% | 97.0% |
| 3962108 | 70.3.1.3 ↗ | beta barrels › beta-clip › SET domain-like › SET domain-like › SAF | 0.80 | 59.0 | 6.43e-01 | 79.1% | 94.3% |
| 3970891 | 70.3.1.18 ↗ | beta barrels › beta-clip › SET domain-like › SET domain-like › ChapFlgA | 0.80 | 57.0 | 6.49e-01 | 75.6% | 98.5% |
| 4588640 | 70.3.1.3 ↗ | beta barrels › beta-clip › SET domain-like › SET domain-like › SAF | 0.79 | 60.0 | 6.56e-01 | 84.9% | 97.1% |
| 224541 | 70.3.1.3 ↗ | beta barrels › beta-clip › SET domain-like › SET domain-like › SAF | 0.78 | 59.0 | 6.55e-01 | 80.2% | 100.0% |
| 4678813 | 70.3.1.3 ↗ | beta barrels › beta-clip › SET domain-like › SET domain-like › SAF | 0.78 | 53.0 | 6.16e-01 | 74.4% | 100.0% |
| 3393782 | 70.3.1.3 ↗ | beta barrels › beta-clip › SET domain-like › SET domain-like › SAF | 0.78 | 53.0 | 6.19e-01 | 74.4% | 100.0% |
| 5028485 | 70.3.1.3 ↗ | beta barrels › beta-clip › SET domain-like › SET domain-like › SAF | 0.78 | 55.0 | 6.23e-01 | 79.1% | 96.9% |
| 4942460 | 70.3.1.3 ↗ | beta barrels › beta-clip › SET domain-like › SET domain-like › SAF | 0.77 | 58.0 | 6.37e-01 | 83.7% | 98.6% |
| 1005527 | 70.3.1.0 ↗ | beta barrels › beta-clip › SET domain-like › SET domain-like | 0.76 | 56.0 | 5.47e-01 | 76.7% | 73.1% |
| 4098701 | 70.3.1.3 ↗ | beta barrels › beta-clip › SET domain-like › SET domain-like › SAF | 0.75 | 54.0 | 5.82e-01 | 75.6% | 87.7% |
| 5032882 | 70.3.1.3 ↗ | beta barrels › beta-clip › SET domain-like › SET domain-like › SAF | 0.74 | 56.0 | 6.26e-01 | 83.7% | 100.0% |
| 4159528 | 70.3.1.3 ↗ | beta barrels › beta-clip › SET domain-like › SET domain-like › SAF | 0.73 | 57.0 | 6.26e-01 | 83.7% | 100.0% |
| 3587047 | 70.3.1.3 ↗ | beta barrels › beta-clip › SET domain-like › SET domain-like › SAF | 0.72 | 56.0 | 6.00e-01 | 83.7% | 94.6% |
| 5029069 | 70.3.1.3 ↗ | beta barrels › beta-clip › SET domain-like › SET domain-like › SAF | 0.71 | 56.0 | 5.94e-01 | 83.7% | 97.3% |
| 3387261 | 70.3.1.3 ↗ | beta barrels › beta-clip › SET domain-like › SET domain-like › SAF | 0.66 | 53.0 | 5.62e-01 | 89.5% | 100.0% |
| 3826725 | 5061.1.1.1 ↗ | alpha complex topology › Preprotein translocase SecY subunit › Preprotein translocase SecY subunit › Preprotein translocase SecY subunit › SecY | 0.50 | 44.0 | 2.84e-01 | 97.7% | 33.1% |
D2
medium
residues 313-390
Domain cluster:
representative
CATH (15)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1hciA04 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.64 | 56.0 | 5.00e-01 | 100.0% | 93.0% |
| 1yz5B00 | 1.20.190.20 | Mainly Alpha › Up-down Bundle › Delta-Endotoxin; domain 1 › 14-3-3 domain | 0.64 | 54.0 | 3.90e-01 | 94.9% | 64.2% |
| 4egwA02 | 1.20.58.340 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Magnesium transport protein CorA, transmembrane region | 0.63 | 55.0 | 4.84e-01 | 100.0% | 96.6% |
| 1sj7C00 | 1.20.1420.10 | Mainly Alpha › Up-down Bundle › A middle domain of Talin 1 › Talin, central domain | 0.62 | 53.0 | 4.23e-01 | 97.4% | 65.7% |
| 5pg1A00 | 1.20.920.10 | Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like | 0.60 | 41.0 | 3.67e-01 | 71.8% | 73.0% |
| 4pqhA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.59 | 50.0 | 4.41e-01 | 94.9% | 71.8% |
| 5c8aA01 | 1.10.1240.10 | Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Methionine synthase domain | 0.58 | 40.0 | 4.09e-01 | 74.4% | 97.4% |
| 4r2fA02 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.56 | 44.0 | 3.40e-01 | 89.7% | 91.5% |
| 1mhyG01 | 1.20.1280.10 | Mainly Alpha › Up-down Bundle › Monooxygenase › Methane monooxygenase, gamma chain, domain 1 | 0.55 | 38.0 | 4.06e-01 | 73.1% | 89.7% |
| 4n4gA01 | 1.20.920.10 | Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like | 0.54 | 45.0 | 4.11e-01 | 98.7% | 67.6% |
| 4lp8A01 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.54 | 39.0 | 3.56e-01 | 83.3% | 57.7% |
| 1wchA00 | 3.90.190.10 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily | 0.54 | 45.0 | 3.05e-01 | 93.6% | 65.3% |
| 3u9jA00 | 1.20.120.520 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › nmb1532 protein domain like | 0.52 | 43.0 | 3.60e-01 | 98.7% | 62.4% |
| 1pu6A01 | 1.10.1670.10 | Mainly Alpha › Orthogonal Bundle › Endonuclease Iii, domain 2 › Helix-hairpin-Helix base-excision DNA repair enzymes (C-terminal) | 0.51 | 36.0 | 3.46e-01 | 75.6% | 98.9% |
| 2yqzA02 | 1.10.8.900 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.51 | 31.0 | 3.37e-01 | 71.8% | 72.1% |
ECOD (13)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3989031 | 4121.1.1.1 ↗ | a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like › CorA | 0.69 | 60.0 | 4.22e-01 | 97.4% | 72.0% |
| 3271283 | 130.1.1.20 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › HeH | 0.60 | 30.0 | 3.43e-01 | 70.5% | 63.3% |
| 3461370 | 604.3.1.0 ↗ | alpha bundles › Spectrin repeat-like › BAG domain › BAG domain | 0.59 | 46.0 | 4.56e-01 | 87.2% | 94.1% |
| 3288893 | 604.1.1.141 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › DUF349 | 0.59 | 51.0 | 5.11e-01 | 100.0% | 97.5% |
| 4249547 | 304.41.1.1 ↗ | a+b two layers › Alpha-beta plaits › Glutamyl tRNA-reductase catalytic, N-terminal domain › Glutamyl tRNA-reductase catalytic, N-terminal domain › GlutR_N | 0.57 | 46.0 | 3.86e-01 | 89.7% | 79.3% |
| 3926671 | 4967.1.1.0 ↗ | alpha bundles › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases | 0.55 | 35.0 | 3.62e-01 | 79.5% | 68.0% |
| 3722159 | 5001.1.1.10 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Ceramidase | 0.55 | 44.0 | 2.88e-01 | 85.9% | 80.6% |
| 4566384 | 4163.1.2.1 ↗ | alpha bundles › GINS helical bundle-like › GINS helical bundle-like › PSF2 C-terminal domain-like › Sld5 | 0.54 | 47.0 | 4.35e-01 | 100.0% | 100.0% |
| 4169130 | 102.1.1.5 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › SAM_LFY | 0.53 | 40.0 | 3.89e-01 | 82.1% | 73.3% |
| 4175964 | 244.3.1.0 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › SufE/NifU › SufE/NifU | 0.53 | 37.0 | 3.47e-01 | 73.1% | 81.0% |
| 4599610 | 102.1.1.5 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › SAM_LFY | 0.53 | 40.0 | 3.75e-01 | 80.8% | 69.5% |
| 3989754 | 592.2.1.0 ↗ | alpha arrays › PWI domain-like › YugE-like › YugE-like | 0.52 | 36.0 | 3.76e-01 | 70.5% | 91.4% |
| 3686477 | 509.1.1.0 ↗ | alpha bundles › PAH2 domain › PAH2 domain › PAH2 domain | 0.52 | 37.0 | 3.75e-01 | 80.8% | 78.7% |