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SRR1747018_scaffold_0_prodigal-single.1__X__X__00215
Bact-VirSRR1747018_scaffold_0_prodigal-single.1__X__X__00215
Identity
- Kingdom:
- phage
Quality
78.0
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 41-161
Domain cluster:
rep: SRR1747065_scaffold_10_prodigal-single.1__X__X__00218__D6-112
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF02661.24 best | Fic | 32.4 | 2.00e-07 | 71.9% | 86.0% |
CATH (31)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3dd7C00 | 1.20.120.1870 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Fic/DOC protein, Fido domain | 0.85 | 78.0 | 7.80e-01 | 98.3% | 95.9% |
| 4u04A02 | 1.10.3290.10 | Mainly Alpha › Orthogonal Bundle › Fic-like fold › Fido-like domain | 0.74 | 68.0 | 5.43e-01 | 99.2% | 62.0% |
| 3cucA00 | 1.10.3290.10 | Mainly Alpha › Orthogonal Bundle › Fic-like fold › Fido-like domain | 0.72 | 65.0 | 5.03e-01 | 99.2% | 60.3% |
| 4x2cA00 | 1.10.3290.10 | Mainly Alpha › Orthogonal Bundle › Fic-like fold › Fido-like domain | 0.67 | 59.0 | 4.89e-01 | 96.7% | 55.1% |
| 1x42A02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.63 | 42.0 | 4.81e-01 | 75.2% | 97.6% |
| 3ckdA02 | 1.20.58.360 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Shigella T3SS effector IpaH defines | 0.62 | 36.0 | 3.61e-01 | 75.2% | 54.0% |
| 3q2qA00 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.61 | 48.0 | 3.60e-01 | 84.3% | 78.7% |
| 1zp2A02 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.60 | 45.0 | 4.70e-01 | 93.4% | 86.6% |
| 1abvA00 | 1.10.520.20 | Mainly Alpha › Orthogonal Bundle › Peroxidase; domain 1 › N-terminal domain of the delta subunit of the F1F0-ATP synthase | 0.60 | 40.0 | 4.26e-01 | 74.4% | 79.0% |
| 5xs2B02 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.59 | 46.0 | 4.49e-01 | 93.4% | 76.5% |
| 1g3nC01 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.58 | 41.0 | 4.15e-01 | 91.7% | 74.2% |
| 5k29A00 | 1.20.920.10 | Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like | 0.57 | 39.0 | 4.29e-01 | 76.0% | 87.6% |
| 3p9dG01 | 1.10.560.10 | Mainly Alpha › Orthogonal Bundle › GROEL; domain 1 › GroEL-like equatorial domain | 0.56 | 50.0 | 3.98e-01 | 99.2% | 54.5% |
| 3vkgA09 | 1.20.920.30 | Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › | 0.56 | 48.0 | 4.55e-01 | 95.0% | 93.1% |
| 3h4cA01 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.56 | 39.0 | 4.29e-01 | 93.4% | 92.7% |
| 3ousA00 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.55 | 30.0 | 3.54e-01 | 74.4% | 76.8% |
| 3o60A00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.53 | 46.0 | 4.02e-01 | 94.2% | 96.2% |
| 4cgrB00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.53 | 40.0 | 3.49e-01 | 80.2% | 73.3% |
| 5azpB01 | 1.20.1600.10 | Mainly Alpha › Up-down Bundle › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) | 0.53 | 38.0 | 2.73e-01 | 74.4% | 45.5% |
| 7kypB01 | 1.10.3470.10 | Mainly Alpha › Orthogonal Bundle › ABC transporter involved in vitamin B12 uptake, BtuC › ABC transporter involved in vitamin B12 uptake, BtuC | 0.53 | 37.0 | 2.90e-01 | 71.9% | 70.4% |
| 4o6yB00 | 1.20.120.1770 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.52 | 37.0 | 3.12e-01 | 72.7% | 91.9% |
| 1xo0A01 | 1.10.150.130 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain | 0.52 | 35.0 | 3.60e-01 | 85.1% | 73.0% |
| 1yhuB00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.52 | 44.0 | 4.17e-01 | 92.6% | 83.3% |
| 2mabA00 | 1.10.10.1350 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Spidroin domain, C-terminal domain | 0.52 | 40.0 | 4.17e-01 | 81.0% | 100.0% |
| 1i5nB00 | 1.20.120.160 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HPT domain | 0.52 | 36.0 | 3.64e-01 | 93.4% | 70.2% |
| 2gb7D00 | 3.40.91.80 | Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › | 0.52 | 39.0 | 3.02e-01 | 80.2% | 77.7% |
| 4nufA02 | 1.10.565.10 | Mainly Alpha › Orthogonal Bundle › Retinoid X Receptor › Retinoid X Receptor | 0.51 | 45.0 | 3.99e-01 | 97.5% | 65.9% |
| 3sqiA01 | 1.10.150.540 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › | 0.51 | 38.0 | 4.09e-01 | 90.1% | 96.0% |
| 1a00B00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.50 | 43.0 | 4.10e-01 | 95.0% | 88.4% |
| 1u6zA03 | 1.10.3210.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 | 0.50 | 41.0 | 3.93e-01 | 90.1% | 78.1% |
| 1s9qA00 | 1.10.565.10 | Mainly Alpha › Orthogonal Bundle › Retinoid X Receptor › Retinoid X Receptor | 0.50 | 44.0 | 3.64e-01 | 98.3% | 61.6% |
ECOD (40)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3588861 | 4040.1.1.1 ↗ | alpha bundles › Fic-like › Fic-like › Fic-like › Fic | 0.84 | 78.0 | 7.49e-01 | 98.3% | 94.8% |
| 5049550 | 4040.1.1.1 ↗ | alpha bundles › Fic-like › Fic-like › Fic-like › Fic | 0.83 | 77.0 | 7.64e-01 | 98.3% | 97.6% |
| 3291594 | 4040.1.1.1 ↗ | alpha bundles › Fic-like › Fic-like › Fic-like › Fic | 0.81 | 75.0 | 7.36e-01 | 98.3% | 93.1% |
| 4980558 | 4040.1.1.1 ↗ | alpha bundles › Fic-like › Fic-like › Fic-like › Fic | 0.81 | 75.0 | 6.84e-01 | 98.3% | 98.1% |
| 5004520 | 4040.1.1.1 ↗ | alpha bundles › Fic-like › Fic-like › Fic-like › Fic | 0.81 | 72.0 | 7.37e-01 | 96.7% | 99.1% |
| 5005301 | 4040.1.1.1 ↗ | alpha bundles › Fic-like › Fic-like › Fic-like › Fic | 0.81 | 71.0 | 7.26e-01 | 95.9% | 98.3% |
| 4966457 | 4040.1.1.1 ↗ | alpha bundles › Fic-like › Fic-like › Fic-like › Fic | 0.80 | 70.0 | 7.23e-01 | 98.3% | 98.2% |
| 4937383 | 4040.1.1.1 ↗ | alpha bundles › Fic-like › Fic-like › Fic-like › Fic | 0.80 | 73.0 | 7.22e-01 | 95.9% | 96.8% |
| 5058060 | 4040.1.1.1 ↗ | alpha bundles › Fic-like › Fic-like › Fic-like › Fic | 0.78 | 72.0 | 6.80e-01 | 98.3% | 96.4% |
| 5021433 | 4040.1.1.1 ↗ | alpha bundles › Fic-like › Fic-like › Fic-like › Fic | 0.77 | 70.0 | 6.97e-01 | 98.3% | 100.0% |
| 3263257 | 4040.1.1.1 ↗ | alpha bundles › Fic-like › Fic-like › Fic-like › Fic | 0.75 | 57.0 | 5.55e-01 | 78.5% | 92.3% |
| 3801665 | 4040.1.1.1 ↗ | alpha bundles › Fic-like › Fic-like › Fic-like › Fic | 0.75 | 52.0 | 5.50e-01 | 71.9% | 84.5% |
| 3341549 | 4040.1.1.0 ↗ | alpha bundles › Fic-like › Fic-like › Fic-like | 0.75 | 69.0 | 5.39e-01 | 100.0% | 58.0% |
| 3963324 | 4040.1.1.1 ↗ | alpha bundles › Fic-like › Fic-like › Fic-like › Fic | 0.74 | 68.0 | 5.25e-01 | 99.2% | 54.6% |
| 4980541 | 4040.1.1.1 ↗ | alpha bundles › Fic-like › Fic-like › Fic-like › Fic | 0.74 | 66.0 | 5.12e-01 | 96.7% | 55.4% |
| 3931514 | 4040.1.1.1 ↗ | alpha bundles › Fic-like › Fic-like › Fic-like › Fic | 0.74 | 67.0 | 5.23e-01 | 98.3% | 55.3% |
| 3872483 | 4040.1.1.0 ↗ | alpha bundles › Fic-like › Fic-like › Fic-like | 0.74 | 68.0 | 5.52e-01 | 100.0% | 70.5% |
| 5032503 | 4040.1.1.1 ↗ | alpha bundles › Fic-like › Fic-like › Fic-like › Fic | 0.74 | 67.0 | 5.21e-01 | 98.3% | 56.8% |
| 3261133 | 4040.1.1.1 ↗ | alpha bundles › Fic-like › Fic-like › Fic-like › Fic | 0.73 | 57.0 | 5.44e-01 | 81.8% | 89.3% |
| 4993696 | 4040.1.1.1 ↗ | alpha bundles › Fic-like › Fic-like › Fic-like › Fic | 0.73 | 65.0 | 5.17e-01 | 96.7% | 58.7% |
| 4940660 | 4040.1.1.1 ↗ | alpha bundles › Fic-like › Fic-like › Fic-like › Fic | 0.73 | 65.0 | 5.17e-01 | 96.7% | 60.9% |
| 340900 | 4040.1.1.1 ↗ | alpha bundles › Fic-like › Fic-like › Fic-like › Fic | 0.72 | 66.0 | 5.05e-01 | 99.2% | 60.1% |
| 5029915 | 4040.1.1.1 ↗ | alpha bundles › Fic-like › Fic-like › Fic-like › Fic | 0.72 | 64.0 | 5.07e-01 | 96.7% | 60.8% |
| 3867152 | 601.1.2.87 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › I/LWEQ domain (Pfam 01608) › TMEM126 | 0.67 | 48.0 | 4.46e-01 | 74.4% | 98.0% |
| 3769864 | 601.4.1.57 ↗ | alpha bundles › Four-helical up-and-down bundle › Histidine kinase associated sensor domains › Histidine kinase associated sensor domains › TMEM126 | 0.65 | 47.0 | 4.27e-01 | 75.2% | 91.5% |
| 5072852 | 2004.1.1.76 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF87 | 0.62 | 48.0 | 3.35e-01 | 81.0% | 31.6% |
| 146219 | 4040.1.1.1 ↗ | alpha bundles › Fic-like › Fic-like › Fic-like › Fic | 0.62 | 52.0 | 4.64e-01 | 90.9% | 65.9% |
| 3931221 | 101.1.10.1 ↗ | alpha arrays › HTH › HTH › Cyclin-like › Cyclin_N | 0.61 | 50.0 | 4.60e-01 | 93.4% | 66.7% |
| 3526937 | 101.1.10.1 ↗ | alpha arrays › HTH › HTH › Cyclin-like › Cyclin_N | 0.60 | 46.0 | 4.43e-01 | 93.4% | 70.7% |
| 1276701 | 101.1.10.1 ↗ | alpha arrays › HTH › HTH › Cyclin-like › Cyclin_N | 0.60 | 45.0 | 4.49e-01 | 93.4% | 74.6% |
| 3282048 | 106.1.1.11 ↗ | alpha arrays › Globin-like › Globin-like › Globin-like › RsbRD_N | 0.57 | 49.0 | 4.63e-01 | 92.6% | 83.4% |
| 5025027 | 101.1.10.3 ↗ | alpha arrays › HTH › HTH › Cyclin-like › TFIIB | 0.57 | 40.0 | 3.99e-01 | 93.4% | 70.4% |
| 3876503 | 108.1.1.35 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_13 | 0.56 | 41.0 | 4.01e-01 | 79.3% | 84.3% |
| 4988365 | 180.1.1.1 ↗ | alpha bundles › Acid phosphatase/Vanadium-dependent haloperoxidase › Acid phosphatase/Vanadium-dependent haloperoxidase › Acid phosphatase/Vanadium-dependent haloperoxidase › PAP2 | 0.55 | 37.0 | 3.74e-01 | 90.1% | 68.3% |
| 3737512 | 101.1.10.1 ↗ | alpha arrays › HTH › HTH › Cyclin-like › Cyclin_N | 0.55 | 39.0 | 3.66e-01 | 95.0% | 58.7% |
| 4996192 | 5057.1.1.0 ↗ | alpha bundles › Neurotransmitter-gated ion-channel transmembrane pore › Neurotransmitter-gated ion-channel transmembrane pore › Neurotransmitter-gated ion-channel transmembrane pore | 0.54 | 44.0 | 4.25e-01 | 91.7% | 77.8% |
| 3275812 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.54 | 41.0 | 4.18e-01 | 94.2% | 84.3% |
| 2817087 | 5065.1.1.1 ↗ | alpha bundles › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › ABC-3 | 0.53 | 37.0 | 2.85e-01 | 71.9% | 67.2% |
| 3396321 | 3352.1.1.6 ↗ | alpha bundles › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain › Glyco_transf_22 | 0.50 | 44.0 | 2.97e-01 | 95.0% | 55.9% |
| 3278832 | 106.1.1.11 ↗ | alpha arrays › Globin-like › Globin-like › Globin-like › RsbRD_N | 0.50 | 42.0 | 4.11e-01 | 91.7% | 85.9% |