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SRR1747018_scaffold_0_prodigal-single.1__X__X__00226

Bact-Vir

SRR1747018_scaffold_0_prodigal-single.1__X__X__00226

Identity

Kingdom:
phage

Quality

55.7 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 300-376
PDB
Domain cluster: representative
CATH (6)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3weeB03 3.90.640.10 Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › ATPase, substrate binding domain, subdomain 4 0.61 28.0 2.44e-01 75.3% 27.0%
5yvxA00 3.30.40.100 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › 0.59 25.0 2.77e-01 89.6% 46.7%
4b9wA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.55 30.0 3.36e-01 84.4% 69.6%
2c7yA00 3.40.47.10 Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase 0.53 42.0 2.82e-01 94.8% 81.8%
3tqtA03 3.30.1490.20 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain 0.51 28.0 3.02e-01 96.1% 60.3%
6nrzA02 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.50 39.0 2.61e-01 87.0% 87.6%
ECOD (3)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3984313 3227.1.1.0 ↗ alpha complex topology › phosphorylation-coupled saccharide transporter ChbC › phosphorylation-coupled saccharide transporter ChbC › phosphorylation-coupled saccharide transporter ChbC 0.56 40.0 2.70e-01 76.6% 94.5%
4988661 866.1.1.2 ↗ a+b duplicates or obligate multimers › CheC-like › CheC-like › CheC-like › CheC 0.53 36.0 2.76e-01 93.5% 28.4%
3502155 389.1.3.0 ↗ few secondary structure elements › EGF-like › EGF-related › TNF receptor-like 0.51 32.0 3.23e-01 70.1% 61.3%