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SRR1747018_scaffold_0_prodigal-single.1__X__X__00263
Bact-VirSRR1747018_scaffold_0_prodigal-single.1__X__X__00263
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 4-92
Domain cluster:
rep: MK504444.1__QBJ03634.1__UCC3521_0096__00096__D7-98
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00216.27 best | Bac_DNA_binding | 48.8 | 9.30e-13 | 98.9% | 96.7% |
CATH (11)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5ekaA00 | 4.10.520.10 | Few Secondary Structures › Irregular › HU Protein; Chain A › IHF-like DNA-binding proteins | 0.91 | 77.0 | 7.87e-01 | 100.0% | 91.8% |
| 4pt4B00 | 4.10.520.10 | Few Secondary Structures › Irregular › HU Protein; Chain A › IHF-like DNA-binding proteins | 0.83 | 76.0 | 7.42e-01 | 100.0% | 91.8% |
| 2np2A00 | 4.10.520.10 | Few Secondary Structures › Irregular › HU Protein; Chain A › IHF-like DNA-binding proteins | 0.82 | 75.0 | 7.15e-01 | 100.0% | 94.1% |
| 1owfA00 | 4.10.520.10 | Few Secondary Structures › Irregular › HU Protein; Chain A › IHF-like DNA-binding proteins | 0.81 | 74.0 | 7.21e-01 | 100.0% | 92.7% |
| 2ndpA00 | 4.10.520.10 | Few Secondary Structures › Irregular › HU Protein; Chain A › IHF-like DNA-binding proteins | 0.78 | 71.0 | 6.88e-01 | 100.0% | 91.9% |
| 2iieA01 | 4.10.520.10 | Few Secondary Structures › Irregular › HU Protein; Chain A › IHF-like DNA-binding proteins | 0.78 | 71.0 | 6.64e-01 | 100.0% | 86.1% |
| 4n1vA00 | 4.10.520.10 | Few Secondary Structures › Irregular › HU Protein; Chain A › IHF-like DNA-binding proteins | 0.77 | 71.0 | 7.02e-01 | 100.0% | 95.7% |
| 4fmrA02 | 4.10.520.10 | Few Secondary Structures › Irregular › HU Protein; Chain A › IHF-like DNA-binding proteins | 0.76 | 66.0 | 6.72e-01 | 100.0% | 94.3% |
| 6lmjB00 | 4.10.520.10 | Few Secondary Structures › Irregular › HU Protein; Chain A › IHF-like DNA-binding proteins | 0.76 | 70.0 | 6.76e-01 | 100.0% | 95.9% |
| 1wtuA00 | 4.10.520.10 | Few Secondary Structures › Irregular › HU Protein; Chain A › IHF-like DNA-binding proteins | 0.69 | 63.0 | 6.07e-01 | 100.0% | 89.9% |
| 1ju2A02 | 3.30.410.40 | Alpha Beta › 2-Layer Sandwich › Cholesterol Oxidase; domain 2 › | 0.56 | 39.0 | 3.06e-01 | 71.9% | 56.9% |
ECOD (26)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3971236 | 101.17.1.1 ↗ | alpha arrays › HTH › IHF-like DNA-binding proteins › IHF-like DNA-binding proteins › Bac_DNA_binding | 0.96 | 72.0 | 8.03e-01 | 100.0% | 94.5% |
| 4599773 | 101.17.1.1 ↗ | alpha arrays › HTH › IHF-like DNA-binding proteins › IHF-like DNA-binding proteins › Bac_DNA_binding | 0.94 | 71.0 | 7.80e-01 | 100.0% | 94.5% |
| 1859698 | 101.17.1.1 ↗ | alpha arrays › HTH › IHF-like DNA-binding proteins › IHF-like DNA-binding proteins › Bac_DNA_binding | 0.91 | 77.0 | 7.87e-01 | 100.0% | 91.8% |
| 4284216 | 101.17.1.1 ↗ | alpha arrays › HTH › IHF-like DNA-binding proteins › IHF-like DNA-binding proteins › Bac_DNA_binding | 0.90 | 85.0 | 8.30e-01 | 100.0% | 95.8% |
| 4508411 | 101.17.1.1 ↗ | alpha arrays › HTH › IHF-like DNA-binding proteins › IHF-like DNA-binding proteins › Bac_DNA_binding | 0.90 | 84.0 | 8.03e-01 | 100.0% | 89.0% |
| 4183750 | 101.17.1.1 ↗ | alpha arrays › HTH › IHF-like DNA-binding proteins › IHF-like DNA-binding proteins › Bac_DNA_binding | 0.89 | 66.0 | 6.99e-01 | 100.0% | 86.3% |
| 4274974 | 101.17.1.1 ↗ | alpha arrays › HTH › IHF-like DNA-binding proteins › IHF-like DNA-binding proteins › Bac_DNA_binding | 0.87 | 80.0 | 7.66e-01 | 100.0% | 89.0% |
| 4681823 | 101.17.1.1 ↗ | alpha arrays › HTH › IHF-like DNA-binding proteins › IHF-like DNA-binding proteins › Bac_DNA_binding | 0.86 | 79.0 | 7.63e-01 | 100.0% | 89.0% |
| 4240651 | 101.17.1.1 ↗ | alpha arrays › HTH › IHF-like DNA-binding proteins › IHF-like DNA-binding proteins › Bac_DNA_binding | 0.86 | 79.0 | 7.58e-01 | 100.0% | 89.0% |
| 3964061 | 101.17.1.1 ↗ | alpha arrays › HTH › IHF-like DNA-binding proteins › IHF-like DNA-binding proteins › Bac_DNA_binding | 0.85 | 78.0 | 7.37e-01 | 100.0% | 91.3% |
| 4662987 | 101.17.1.0 ↗ | alpha arrays › HTH › IHF-like DNA-binding proteins › IHF-like DNA-binding proteins | 0.85 | 77.0 | 7.59e-01 | 100.0% | 93.7% |
| 222497 | 101.17.1.1 ↗ | alpha arrays › HTH › IHF-like DNA-binding proteins › IHF-like DNA-binding proteins › Bac_DNA_binding | 0.84 | 77.0 | 7.51e-01 | 100.0% | 90.8% |
| 4051851 | 101.17.1.1 ↗ | alpha arrays › HTH › IHF-like DNA-binding proteins › IHF-like DNA-binding proteins › Bac_DNA_binding | 0.84 | 76.0 | 7.37e-01 | 100.0% | 95.0% |
| 5073165 | 101.17.1.0 ↗ | alpha arrays › HTH › IHF-like DNA-binding proteins › IHF-like DNA-binding proteins | 0.83 | 76.0 | 7.58e-01 | 98.9% | 97.8% |
| 4108127 | 101.17.1.1 ↗ | alpha arrays › HTH › IHF-like DNA-binding proteins › IHF-like DNA-binding proteins › Bac_DNA_binding | 0.83 | 76.0 | 7.47e-01 | 100.0% | 94.7% |
| 4227571 | 101.17.1.1 ↗ | alpha arrays › HTH › IHF-like DNA-binding proteins › IHF-like DNA-binding proteins › Bac_DNA_binding | 0.82 | 75.0 | 7.22e-01 | 100.0% | 90.0% |
| 163570 | 101.17.1.1 ↗ | alpha arrays › HTH › IHF-like DNA-binding proteins › IHF-like DNA-binding proteins › Bac_DNA_binding | 0.82 | 75.0 | 7.15e-01 | 100.0% | 94.1% |
| 4088528 | 101.17.1.1 ↗ | alpha arrays › HTH › IHF-like DNA-binding proteins › IHF-like DNA-binding proteins › Bac_DNA_binding | 0.80 | 73.0 | 7.00e-01 | 100.0% | 90.0% |
| 1916727 | 101.17.1.1 ↗ | alpha arrays › HTH › IHF-like DNA-binding proteins › IHF-like DNA-binding proteins › Bac_DNA_binding | 0.78 | 71.0 | 6.88e-01 | 100.0% | 91.9% |
| 2627940 | 101.17.1.1 ↗ | alpha arrays › HTH › IHF-like DNA-binding proteins › IHF-like DNA-binding proteins › Bac_DNA_binding | 0.78 | 72.0 | 6.98e-01 | 100.0% | 94.9% |
| 4168202 | 101.17.1.0 ↗ | alpha arrays › HTH › IHF-like DNA-binding proteins › IHF-like DNA-binding proteins | 0.76 | 69.0 | 6.88e-01 | 98.9% | 96.8% |
| 1919590 | 101.17.1.2 ↗ | alpha arrays › HTH › IHF-like DNA-binding proteins › IHF-like DNA-binding proteins › HU-DNA_bdg | 0.76 | 68.0 | 6.06e-01 | 100.0% | 70.8% |
| 2909 | 101.17.1.1 ↗ | alpha arrays › HTH › IHF-like DNA-binding proteins › IHF-like DNA-binding proteins › Bac_DNA_binding | 0.65 | 57.0 | 5.55e-01 | 100.0% | 90.9% |
| 3483174 | 5052.1.1.1 ↗ | alpha complex topology › Proton glutamate symport protein › Proton glutamate symport protein › Proton glutamate symport protein › SDF | 0.58 | 45.0 | 2.86e-01 | 83.1% | 72.2% |
| 3642558 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.55 | 25.0 | 2.58e-01 | 83.1% | 40.5% |
| 4889260 | 2485.3.1.12 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › DUF6260 | 0.55 | 34.0 | 2.40e-01 | 82.0% | 20.8% |