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SRR1747018_scaffold_0_prodigal-single.1__X__X__00272
Bact-VirSRR1747018_scaffold_0_prodigal-single.1__X__X__00272
Identity
- Kingdom:
- phage
Quality
69.1
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 47-225
Domain cluster:
rep: LD_Run2_08_scaffold_35_prodigal-single.1__X__X__00177__D121-323
CATH (56)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2a5yC01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.69 | 62.0 | 6.22e-01 | 93.9% | 94.0% |
| 7jgsD01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.69 | 60.0 | 5.85e-01 | 90.5% | 96.3% |
| 5aunB01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.64 | 48.0 | 4.47e-01 | 77.1% | 79.7% |
| 2l69A00 | 3.40.50.11230 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.63 | 40.0 | 4.54e-01 | 76.5% | 83.6% |
| 4ml3D00 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.63 | 33.0 | 3.82e-01 | 76.5% | 67.9% |
| 3gl3D00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.63 | 32.0 | 3.65e-01 | 79.9% | 63.5% |
| 1usgA02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.62 | 44.0 | 4.86e-01 | 86.0% | 91.0% |
| 4w7sA01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.60 | 52.0 | 4.57e-01 | 92.7% | 81.7% |
| 2qxyA00 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.60 | 34.0 | 4.02e-01 | 94.4% | 80.7% |
| 2ljaA00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.60 | 33.0 | 3.62e-01 | 77.7% | 63.2% |
| 2z0mA01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.60 | 52.0 | 5.09e-01 | 92.7% | 97.9% |
| 5gvrA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.59 | 51.0 | 4.68e-01 | 92.7% | 88.9% |
| 2jbmA02 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.59 | 40.0 | 4.42e-01 | 93.3% | 84.9% |
| 3jteA00 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.59 | 35.0 | 4.02e-01 | 95.0% | 81.0% |
| 3h5lA02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.59 | 43.0 | 4.51e-01 | 85.5% | 82.4% |
| 3kxqA00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.59 | 41.0 | 3.78e-01 | 71.5% | 100.0% |
| 1kblA04 | 3.20.20.60 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Phosphoenolpyruvate-binding domains | 0.58 | 48.0 | 3.86e-01 | 88.3% | 91.2% |
| 1k68A00 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.57 | 37.0 | 4.11e-01 | 95.5% | 81.4% |
| 1dbrC00 | 3.40.50.2020 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.57 | 43.0 | 4.03e-01 | 87.7% | 64.2% |
| 1p2fA01 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.57 | 32.0 | 3.84e-01 | 95.5% | 81.5% |
| 2kbeA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.57 | 49.0 | 4.56e-01 | 92.7% | 85.8% |
| 1knqA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.57 | 42.0 | 4.34e-01 | 77.1% | 88.9% |
| 4kw2A00 | 3.20.20.150 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Divalent-metal-dependent TIM barrel enzymes | 0.57 | 41.0 | 3.69e-01 | 73.2% | 100.0% |
| 2hroA03 | 3.20.20.60 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Phosphoenolpyruvate-binding domains | 0.56 | 47.0 | 3.78e-01 | 87.7% | 72.6% |
| 3qw3A01 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.56 | 49.0 | 4.37e-01 | 92.7% | 88.4% |
| 4dadA01 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.56 | 33.0 | 3.83e-01 | 95.0% | 79.7% |
| 2l82A00 | 3.40.50.11230 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.56 | 42.0 | 4.39e-01 | 77.1% | 86.4% |
| 7lzaA01 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.56 | 33.0 | 3.96e-01 | 79.3% | 88.1% |
| 1a04A01 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.56 | 34.0 | 3.96e-01 | 78.8% | 86.3% |
| 4dzrA00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.55 | 45.0 | 4.68e-01 | 93.3% | 94.5% |
| 3icsA03 | 3.40.250.10 | Alpha Beta › 3-Layer(aba) Sandwich › Oxidized Rhodanese; domain 1 › Rhodanese-like domain | 0.55 | 28.0 | 3.61e-01 | 86.0% | 85.3% |
| 5c3uA02 | 3.40.50.1100 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.55 | 30.0 | 3.98e-01 | 86.0% | 100.0% |
| 2o0mA00 | 3.40.50.1360 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.54 | 45.0 | 4.04e-01 | 87.7% | 87.9% |
| 2jtqA00 | 3.40.250.10 | Alpha Beta › 3-Layer(aba) Sandwich › Oxidized Rhodanese; domain 1 › Rhodanese-like domain | 0.54 | 26.0 | 3.52e-01 | 76.5% | 90.6% |
| 1cw1A00 | 3.40.718.10 | Alpha Beta › 3-Layer(aba) Sandwich › Isopropylmalate Dehydrogenase › Isopropylmalate Dehydrogenase | 0.53 | 38.0 | 2.89e-01 | 84.4% | 30.8% |
| 6eqoA02 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.53 | 43.0 | 4.15e-01 | 84.9% | 96.6% |
| 4oe6B02 | 3.40.309.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 2 › Aldehyde Dehydrogenase; Chain A, domain 2 | 0.53 | 44.0 | 4.33e-01 | 87.2% | 81.2% |
| 2agkA00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.53 | 46.0 | 4.19e-01 | 92.7% | 92.3% |
| 1bdbA00 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.53 | 41.0 | 3.58e-01 | 81.0% | 91.8% |
| 1reqB02 | 3.40.50.280 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Cobalamin-binding domain | 0.53 | 35.0 | 3.86e-01 | 77.7% | 84.2% |
| 3hpxA01 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.53 | 46.0 | 3.88e-01 | 93.9% | 85.6% |
| 7oslA02 | 3.40.50.12790 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › FHIPEP family, domain 4 | 0.52 | 28.0 | 3.62e-01 | 78.8% | 91.0% |
| 3mz2A00 | 3.20.20.190 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Phosphatidylinositol (PI) phosphodiesterase | 0.52 | 42.0 | 3.65e-01 | 86.0% | 99.6% |
| 3ha9A00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.52 | 32.0 | 3.37e-01 | 77.7% | 66.5% |
| 2zsjA02 | 3.40.50.1100 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.52 | 29.0 | 3.80e-01 | 87.2% | 100.0% |
| 2b8eB01 | 3.40.50.1000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like | 0.52 | 33.0 | 3.90e-01 | 76.0% | 91.1% |
| 1bmtA02 | 3.40.50.280 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Cobalamin-binding domain | 0.52 | 36.0 | 3.81e-01 | 91.1% | 79.1% |
| 5o8zB01 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.52 | 36.0 | 4.06e-01 | 95.5% | 91.5% |
| 4z0tA00 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.52 | 40.0 | 3.59e-01 | 80.4% | 80.7% |
| 4zdoB00 | 3.40.640.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) | 0.52 | 43.0 | 3.18e-01 | 87.7% | 50.2% |
| 1q14A01 | 3.40.50.1220 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › TPP-binding domain | 0.51 | 39.0 | 3.94e-01 | 79.9% | 81.7% |
| 4iscA00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.51 | 40.0 | 4.31e-01 | 87.2% | 95.5% |
| 5tqjA00 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.50 | 29.0 | 3.41e-01 | 80.4% | 79.8% |
| 5enzA02 | 3.40.50.2000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; | 0.50 | 37.0 | 3.87e-01 | 98.3% | 82.6% |
| 7mjzA01 | 3.40.50.12160 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Methylthiotransferase, N-terminal domain | 0.50 | 33.0 | 3.93e-01 | 94.4% | 97.5% |
| 4rv9A02 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.50 | 43.0 | 4.21e-01 | 93.3% | 90.0% |
ECOD (81)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| None | — | 0.77 | 73.0 | 7.13e-01 | 98.9% | 95.8% | |
| None | — | 0.75 | 65.0 | 6.23e-01 | 91.1% | 98.5% | |
| 3291455 | 2004.1.1.1 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA | 0.75 | 71.0 | 6.97e-01 | 100.0% | 96.8% |
| 4024065 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.74 | 70.0 | 6.92e-01 | 100.0% | 97.8% |
| 5027114 | 2004.1.1.196 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_22 | 0.73 | 64.0 | 6.04e-01 | 92.2% | 93.8% |
| 3621730 | 2004.1.1.98 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Rad17 | 0.72 | 63.0 | 6.31e-01 | 92.2% | 96.8% |
| 5000049 | 2004.1.1.196 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_22 | 0.72 | 63.0 | 6.05e-01 | 92.7% | 89.3% |
| 4980505 | 2004.1.1.196 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_22 | 0.72 | 63.0 | 6.04e-01 | 92.7% | 89.8% |
| 4999744 | 2004.1.1.1 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA | 0.71 | 61.0 | 6.31e-01 | 92.2% | 97.0% |
| 3177457 | 2004.1.1.1 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA | 0.71 | 63.0 | 6.21e-01 | 92.2% | 94.6% |
| 5077828 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.71 | 63.0 | 6.35e-01 | 93.3% | 93.9% |
| 3601627 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.71 | 66.0 | 6.15e-01 | 100.0% | 90.5% |
| 3625938 | 2004.1.1.56 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › NB-ARC | 0.70 | 63.0 | 6.17e-01 | 95.0% | 88.4% |
| 3993505 | 2004.1.1.56 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › NB-ARC | 0.70 | 62.0 | 6.22e-01 | 92.7% | 93.3% |
| 3315364 | 2004.1.1.56 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › NB-ARC | 0.70 | 61.0 | 6.37e-01 | 95.0% | 99.4% |
| 3234266 | 2004.1.1.56 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › NB-ARC | 0.69 | 63.0 | 5.90e-01 | 95.0% | 92.9% |
| 3352148 | 2004.1.1.56 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › NB-ARC | 0.69 | 61.0 | 5.40e-01 | 97.2% | 67.3% |
| 1447969 | 2004.1.1.56 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › NB-ARC | 0.69 | 62.0 | 6.07e-01 | 94.4% | 93.7% |
| 3380194 | 207.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats | 0.69 | 62.0 | 3.53e-01 | 94.4% | 11.0% |
| 4019652 | 2004.1.1.56 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › NB-ARC | 0.69 | 58.0 | 5.46e-01 | 94.4% | 73.5% |
| 3378868 | 2004.1.1.56 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › NB-ARC | 0.69 | 60.0 | 6.15e-01 | 91.6% | 95.9% |
| 3939660 | 2004.1.1.130 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › NACHT | 0.69 | 64.0 | 5.68e-01 | 98.9% | 81.6% |
| 3666446 | 2004.1.1.56 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › NB-ARC | 0.69 | 60.0 | 5.78e-01 | 92.2% | 97.0% |
| 3424171 | 2004.1.1.56 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › NB-ARC | 0.68 | 60.0 | 6.07e-01 | 92.7% | 93.9% |
| 4998020 | 2004.1.1.196 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_22 | 0.68 | 60.0 | 5.80e-01 | 92.7% | 88.5% |
| 3492329 | 2004.1.1.1 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA | 0.67 | 62.0 | 6.29e-01 | 98.9% | 100.0% |
| 5002765 | 2004.1.1.1 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA | 0.67 | 60.0 | 6.04e-01 | 98.3% | 95.0% |
| 3181331 | 2004.1.1.56 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › NB-ARC | 0.67 | 61.0 | 6.04e-01 | 95.0% | 94.1% |
| 4016907 | 2004.1.1.196 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_22 | 0.67 | 60.0 | 5.77e-01 | 95.0% | 89.3% |
| 3308399 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.67 | 56.0 | 5.62e-01 | 87.7% | 95.0% |
| 4010878 | 2004.1.1.56 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › NB-ARC | 0.67 | 59.0 | 6.11e-01 | 98.3% | 100.0% |
| 3320924 | 2004.1.1.56 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › NB-ARC | 0.67 | 56.0 | 5.80e-01 | 89.9% | 92.9% |
| 3921457 | 2004.1.1.366 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › NPHP3_N | 0.67 | 63.0 | 5.93e-01 | 100.0% | 92.4% |
| 4017360 | 2004.1.1.196 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_22 | 0.67 | 60.0 | 5.93e-01 | 95.5% | 99.5% |
| 3725360 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.66 | 56.0 | 5.28e-01 | 87.7% | 84.8% |
| 3613905 | 2004.1.1.427 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › RHSP, RHS_N | 0.66 | 62.0 | 5.38e-01 | 100.0% | 99.2% |
| 4943781 | 2004.1.1.1085 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › PF30184 | 0.66 | 60.0 | 4.85e-01 | 96.6% | 98.5% |
| 3668602 | 2004.1.1.56 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › NB-ARC | 0.66 | 59.0 | 5.63e-01 | 94.4% | 82.9% |
| 3804363 | 2004.1.1.56 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › NB-ARC | 0.66 | 59.0 | 5.96e-01 | 95.0% | 95.0% |
| 3383289 | 2004.1.1.56 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › NB-ARC | 0.66 | 59.0 | 6.04e-01 | 97.2% | 100.0% |
| 3447405 | 2004.1.1.56 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › NB-ARC | 0.66 | 56.0 | 4.86e-01 | 91.6% | 60.0% |
| 3327253 | 2004.1.1.56 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › NB-ARC | 0.65 | 59.0 | 5.76e-01 | 95.0% | 96.4% |
| 4241558 | 2004.1.1.35 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Bac_DnaA | 0.65 | 58.0 | 5.56e-01 | 95.0% | 84.0% |
| 4147705 | 2004.1.1.35 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Bac_DnaA | 0.65 | 59.0 | 5.29e-01 | 97.2% | 72.0% |
| 4088504 | 2485.1.1.0 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like | 0.65 | 31.0 | 3.51e-01 | 79.3% | 57.8% |
| 4643148 | 2004.1.1.56 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › NB-ARC | 0.65 | 55.0 | 5.72e-01 | 91.6% | 96.4% |
| 2330703 | 2004.1.1.42 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T2SSE | 0.64 | 56.0 | 4.35e-01 | 92.2% | 50.7% |
| 3535391 | 2004.1.1.130 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › NACHT | 0.64 | 58.0 | 5.51e-01 | 97.2% | 98.1% |
| 5073208 | 2004.1.1.42 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T2SSE | 0.64 | 56.0 | 4.78e-01 | 92.7% | 64.6% |
| 3417335 | 2004.1.1.56 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › NB-ARC | 0.64 | 55.0 | 5.58e-01 | 89.9% | 100.0% |
| 3166065 | 2004.1.1.207 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_32 | 0.64 | 54.0 | 4.97e-01 | 89.9% | 92.2% |
| 3339286 | 2004.1.1.56 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › NB-ARC | 0.64 | 57.0 | 5.51e-01 | 94.4% | 86.2% |
| 3597853 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.64 | 55.0 | 5.76e-01 | 97.8% | 100.0% |
| 5067491 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.64 | 52.0 | 5.16e-01 | 86.6% | 98.9% |
| 3987364 | 2007.1.3.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › Response_reg | 0.63 | 34.0 | 3.78e-01 | 76.5% | 65.0% |
| 3595084 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.62 | 53.0 | 4.61e-01 | 89.4% | 90.2% |
| 3260020 | 2004.1.1.29 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DEAD | 0.61 | 53.0 | 4.79e-01 | 92.7% | 90.1% |
| 3287760 | 2007.1.3.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like | 0.60 | 34.0 | 3.85e-01 | 96.1% | 70.7% |
| 3472776 | 2007.1.2.4 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › ANF_receptor | 0.60 | 42.0 | 4.57e-01 | 70.9% | 93.1% |
| 5034980 | 2007.1.3.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › Response_reg | 0.59 | 33.0 | 3.81e-01 | 95.5% | 72.6% |
| 4179764 | 7570.1.1.1 ↗ | a/b three-layered sandwiches › MurD-like peptide ligases, peptide-binding domain › MurD-like peptide ligases, peptide-binding domain › MurD-like peptide ligases, peptide-binding domain › Mur_ligase_C | 0.58 | 34.0 | 3.79e-01 | 98.3% | 73.3% |
| 5036228 | 2002.1.1.0 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels | 0.57 | 49.0 | 3.80e-01 | 91.6% | 89.9% |
| 1095677 | 2007.1.3.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › Response_reg | 0.57 | 35.0 | 3.91e-01 | 79.3% | 78.1% |
| 3408886 | 2004.1.1.30 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C | 0.57 | 46.0 | 3.47e-01 | 87.7% | 35.3% |
| 4682511 | 2007.1.3.2 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › UPF0004 | 0.56 | 32.0 | 3.74e-01 | 81.0% | 76.9% |
| 4064598 | 7543.1.1.2 ↗ | a/b three-layered sandwiches › Methylglyoxal synthase-like › Methylglyoxal synthase-like › Methylglyoxal synthase-like › MGS | 0.55 | 33.0 | 3.55e-01 | 85.5% | 68.4% |
| 4992215 | 7501.1.1.2 ↗ | a/b three-layered sandwiches › Dihydrofolate reductases › Dihydrofolate reductases › Dihydrofolate reductases › RibD_C | 0.54 | 40.0 | 3.83e-01 | 76.5% | 94.9% |
| 5002342 | 2002.1.1.75 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › QRPTase_C | 0.53 | 42.0 | 4.36e-01 | 89.4% | 89.1% |
| 5079404 | 2006.1.6.33 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › VWA_4 | 0.53 | 39.0 | 3.76e-01 | 76.0% | 90.5% |
| 3192842 | 2003.1.5.14 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_3 | 0.53 | 46.0 | 4.16e-01 | 93.3% | 82.4% |
| 1936747 | 7550.1.1.1 ↗ | a/b three-layered sandwiches › Tetrapyrrole methylase N-terminal domain › Tetrapyrrole methylase N-terminal domain › Tetrapyrrole methylase N-terminal domain › TP_methylase | 0.53 | 31.0 | 3.94e-01 | 76.0% | 100.0% |
| 4330223 | 2007.1.3.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like | 0.52 | 35.0 | 3.89e-01 | 95.0% | 85.7% |
| 3215494 | 2006.1.6.0 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like | 0.52 | 39.0 | 3.78e-01 | 77.7% | 92.0% |
| 4243855 | 2007.1.3.2 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › UPF0004 | 0.51 | 36.0 | 3.97e-01 | 94.4% | 89.3% |
| 4992624 | 2002.1.1.236 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › DHQS | 0.51 | 41.0 | 4.10e-01 | 88.3% | 82.2% |
| 3625745 | 2006.1.6.1 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › VWA | 0.51 | 39.0 | 3.76e-01 | 78.2% | 84.0% |
| 2813717 | 2002.1.1.0 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels | 0.51 | 43.0 | 4.30e-01 | 90.5% | 88.4% |
| 4319696 | 2007.1.3.2 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › UPF0004 | 0.51 | 35.0 | 3.86e-01 | 94.4% | 87.1% |
| 4003239 | 2006.1.6.1 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › VWA | 0.51 | 38.0 | 3.66e-01 | 76.5% | 89.3% |
| 1519097 | 7570.1.1.1 ↗ | a/b three-layered sandwiches › MurD-like peptide ligases, peptide-binding domain › MurD-like peptide ligases, peptide-binding domain › MurD-like peptide ligases, peptide-binding domain › Mur_ligase_C | 0.51 | 34.0 | 3.73e-01 | 79.9% | 83.9% |
| 4953344 | 2007.1.3.2 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › UPF0004 | 0.50 | 33.0 | 3.76e-01 | 97.2% | 88.9% |
D2
high
residues 230-322
Domain cluster:
representative
CATH (18)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1r6bX03 | 1.10.8.60 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.75 | 63.0 | 6.52e-01 | 100.0% | 96.6% |
| 5ubvA02 | 1.10.8.60 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.70 | 51.0 | 5.73e-01 | 100.0% | 100.0% |
| 4a3vB01 | 1.10.8.60 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.69 | 50.0 | 5.54e-01 | 100.0% | 98.6% |
| 3whkA02 | 1.10.8.60 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.68 | 49.0 | 5.47e-01 | 100.0% | 97.2% |
| 2b3tA01 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.64 | 47.0 | 4.90e-01 | 97.8% | 85.7% |
| 2pnqA00 | 3.60.40.10 | Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain | 0.57 | 40.0 | 2.69e-01 | 74.2% | 27.7% |
| 2i10B02 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.55 | 39.0 | 3.50e-01 | 77.4% | 54.4% |
| 3fxhA00 | 1.20.120.600 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Crystal structure from the mobile metagenome of halifax harbour sewage outfall | 0.54 | 40.0 | 3.82e-01 | 78.5% | 67.3% |
| 2ba0A03 | 3.30.1370.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 | 0.54 | 43.0 | 4.56e-01 | 93.5% | 98.8% |
| 2m6uA00 | 1.20.81.20 | Mainly Alpha › Up-down Bundle › Receptor-associated Protein › | 0.54 | 41.0 | 4.32e-01 | 80.6% | 98.8% |
| 1tuaA02 | 3.30.1370.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 | 0.54 | 41.0 | 3.96e-01 | 81.7% | 71.4% |
| 3k3wB03 | 1.10.1400.10 | Mainly Alpha › Orthogonal Bundle › Penicillin amidase (Acylase) alpha subunit, N-terminal domain › Aminohydrolase, alpha-helical knob region | 0.54 | 44.0 | 3.74e-01 | 91.4% | 96.2% |
| 6fakA02 | 1.10.246.10 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › | 0.54 | 38.0 | 4.01e-01 | 79.6% | 85.2% |
| 4ex8A00 | 3.40.1790.10 | Alpha Beta › 3-Layer(aba) Sandwich › Indigoidine synthase fold › Indigoidine synthase domain | 0.53 | 40.0 | 2.91e-01 | 82.8% | 89.4% |
| 4ua8A02 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.53 | 39.0 | 3.20e-01 | 79.6% | 58.2% |
| 2hytA00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.52 | 39.0 | 3.04e-01 | 78.5% | 37.3% |
| 4m0mA04 | 1.20.1270.440 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.52 | 38.0 | 3.54e-01 | 78.5% | 60.7% |
| 5bn3A04 | 1.10.1140.10 | Mainly Alpha › Orthogonal Bundle › Bovine Mitochondrial F1-ATPase, ATP Synthase Beta Chain; Chain D, domain3 › Bovine Mitochondrial F1-atpase; Atp Synthase Beta Chain; Chain D, domain 3 | 0.52 | 43.0 | 3.81e-01 | 92.5% | 83.5% |
ECOD (29)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3855039 | 3050.1.1.18 ↗ | alpha bundles › Ribosomal protein L19 (L19e) C-terminal domain › Ribosomal protein L19 (L19e) C-terminal domain › Ribosomal protein L19 (L19e) C-terminal domain › SCAF11-like_C | 0.71 | 50.0 | 5.13e-01 | 82.8% | 75.6% |
| 3563012 | 142.1.1.22 ↗ | alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › SCAF11-like_C | 0.70 | 46.0 | 4.91e-01 | 81.7% | 78.8% |
| 3389399 | 142.1.1.22 ↗ | alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › SCAF11-like_C | 0.69 | 49.0 | 4.76e-01 | 82.8% | 65.7% |
| 3508870 | 148.1.3.172 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_14 | 0.69 | 54.0 | 5.33e-01 | 100.0% | 79.0% |
| 4027192 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.66 | 54.0 | 5.33e-01 | 100.0% | 83.0% |
| 4593945 | 4009.1.1.3 ↗ | alpha bundles › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › KTI12 | 0.65 | 43.0 | 4.63e-01 | 78.5% | 78.8% |
| 3978405 | 3227.1.1.0 ↗ | alpha complex topology › phosphorylation-coupled saccharide transporter ChbC › phosphorylation-coupled saccharide transporter ChbC › phosphorylation-coupled saccharide transporter ChbC | 0.63 | 57.0 | 3.82e-01 | 100.0% | 27.1% |
| 3630322 | 219.1.1.3 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH | 0.61 | 46.0 | 2.90e-01 | 80.6% | 25.2% |
| 3316223 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.60 | 54.0 | 5.22e-01 | 100.0% | 92.4% |
| 3654522 | 166.1.1.1 ↗ | alpha superhelices › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › DXPR_C | 0.59 | 48.0 | 4.67e-01 | 93.5% | 80.0% |
| 3720382 | 145.1.1.1 ↗ | alpha arrays › F-box domain › F-box domain › F-box domain › F-box | 0.57 | 45.0 | 3.50e-01 | 88.2% | 38.8% |
| 3987751 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.56 | 48.0 | 4.08e-01 | 97.8% | 82.4% |
| 5003705 | 191.1.1.0 ↗ | alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain | 0.56 | 40.0 | 3.56e-01 | 76.3% | 52.3% |
| 5035743 | 2004.1.1.30 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C | 0.56 | 43.0 | 2.63e-01 | 82.8% | 13.0% |
| 3460448 | 331.3.1.0 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like | 0.56 | 43.0 | 3.06e-01 | 83.9% | 60.6% |
| 3952605 | 191.1.1.55 ↗ | alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › TetR_C_15 | 0.56 | 41.0 | 3.44e-01 | 80.6% | 46.5% |
| 4683221 | 2005.1.1.7 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1d | 0.54 | 36.0 | 2.59e-01 | 100.0% | 22.5% |
| 4568031 | 191.1.1.2 ↗ | alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › TetR_C_4 | 0.54 | 38.0 | 3.38e-01 | 76.3% | 50.4% |
| 3785370 | 108.1.1.0 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand | 0.54 | 39.0 | 2.89e-01 | 75.3% | 74.2% |
| 4033035 | 632.19.1.3 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Choline binding protein A › Choline binding protein A › DUF1542 | 0.54 | 39.0 | 4.13e-01 | 78.5% | 87.5% |
| 3289221 | 191.1.1.10 ↗ | alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › TetR_C_6 | 0.54 | 39.0 | 3.50e-01 | 78.5% | 54.3% |
| 4634892 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.53 | 45.0 | 4.45e-01 | 100.0% | 87.0% |
| 3960118 | 191.1.1.48 ↗ | alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › TetR_C_46 | 0.53 | 38.0 | 3.51e-01 | 82.8% | 56.8% |
| 3657422 | 1128.1.1.0 ↗ | alpha bundles › LYR protein › LYR protein › LYR protein | 0.53 | 36.0 | 3.70e-01 | 71.0% | 83.3% |
| 4995237 | 327.11.2.1 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1 | 0.52 | 42.0 | 4.34e-01 | 96.8% | 93.3% |
| 5043647 | 1075.1.1.67 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › ABCG5/ABCG8 transmembrane domain › 12TM_1 | 0.52 | 45.0 | 3.49e-01 | 100.0% | 83.6% |
| 3511771 | 162.1.1.0 ↗ | alpha bundles › PTS-regulatory domain, PRD › PTS-regulatory domain, PRD › PTS-regulatory domain, PRD | 0.52 | 43.0 | 4.06e-01 | 92.5% | 92.2% |
| 3278778 | 191.1.1.0 ↗ | alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain | 0.52 | 36.0 | 3.21e-01 | 95.7% | 50.4% |
| 4510837 | 3339.1.1.1 ↗ | alpha bundles › Helical domain in glucansucrase GTF180 › Helical domain in glucansucrase GTF180 › Helical domain in glucansucrase GTF180 › Glyco_hydro_70 | 0.50 | 41.0 | 3.39e-01 | 91.4% | 69.4% |
D3
high
residues 624-729
Domain cluster:
rep: IMGVR_UViG_3300035698_023746-3300035698-Ga0374944_608699_9864_12323__D728-818
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF10431.16 best | ClpB_D2-small | 48.2 | 1.30e-12 | 77.4% | 92.6% |
CATH (13)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4ciuA04 | 1.10.8.60 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.87 | 72.0 | 7.68e-01 | 99.1% | 97.8% |
| 1r6bX05 | 1.10.8.60 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.80 | 68.0 | 7.08e-01 | 100.0% | 98.0% |
| 1um8A02 | 1.10.8.60 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.77 | 64.0 | 6.68e-01 | 100.0% | 96.9% |
| 2p11A02 | 1.10.286.50 | Mainly Alpha › Orthogonal Bundle › GTP Cyclohydrolase I; Chain A, domain 1 › | 0.61 | 31.0 | 3.70e-01 | 97.2% | 70.3% |
| 1s9rA02 | 1.10.3930.10 | Mainly Alpha › Orthogonal Bundle › Pentein › Arginine deiminase | 0.60 | 33.0 | 3.77e-01 | 97.2% | 70.5% |
| 4akfA01 | 3.40.1090.10 | Alpha Beta › 3-Layer(aba) Sandwich › Cytosolic phospholipase A2 catalytic domain › Cytosolic phospholipase A2 catalytic domain | 0.57 | 46.0 | 3.28e-01 | 89.6% | 42.7% |
| 2dirA01 | 3.30.2300.10 | Alpha Beta › 2-Layer Sandwich › THUMP fold › THUMP superfamily | 0.56 | 33.0 | 3.64e-01 | 77.4% | 71.3% |
| 1r4gA00 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.53 | 27.0 | 3.44e-01 | 95.3% | 94.3% |
| 3s5tA01 | 3.30.565.40 | Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Fervidobacterium nodosum Rt17-B1 like | 0.52 | 46.0 | 4.13e-01 | 100.0% | 83.0% |
| 2a2fX02 | 1.20.58.670 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Dsl1p vesicle tethering complex, Tip20p subunit, domain D | 0.51 | 36.0 | 3.35e-01 | 71.7% | 63.6% |
| 3dsbA01 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.51 | 36.0 | 3.70e-01 | 96.2% | 76.2% |
| 1ax8A00 | 1.20.1250.10 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.50 | 38.0 | 3.60e-01 | 94.3% | 66.2% |
| 7sk7A01 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.50 | 44.0 | 3.39e-01 | 99.1% | 80.2% |
ECOD (46)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4493849 | 148.1.3.8 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › ClpB_D2-small | 0.90 | 73.0 | 7.93e-01 | 97.2% | 100.0% |
| 4403270 | 148.1.3.8 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › ClpB_D2-small | 0.90 | 74.0 | 7.92e-01 | 99.1% | 96.8% |
| 3588671 | 148.1.3.8 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › ClpB_D2-small | 0.89 | 74.0 | 7.88e-01 | 100.0% | 96.8% |
| 3967645 | 148.1.3.8 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › ClpB_D2-small | 0.89 | 75.0 | 7.94e-01 | 98.1% | 97.9% |
| 4029162 | 148.1.3.8 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › ClpB_D2-small | 0.89 | 74.0 | 7.78e-01 | 99.1% | 95.8% |
| 3987312 | 148.1.3.8 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › ClpB_D2-small | 0.89 | 72.0 | 7.84e-01 | 99.1% | 100.0% |
| 3815913 | 148.1.3.8 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › ClpB_D2-small | 0.89 | 74.0 | 7.82e-01 | 99.1% | 96.8% |
| 4621870 | 148.1.3.8 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › ClpB_D2-small | 0.89 | 74.0 | 7.85e-01 | 99.1% | 97.9% |
| 4031233 | 148.1.3.8 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › ClpB_D2-small | 0.89 | 71.0 | 7.64e-01 | 98.1% | 97.8% |
| 4419950 | 148.1.3.8 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › ClpB_D2-small | 0.89 | 74.0 | 7.31e-01 | 100.0% | 83.6% |
| 3326552 | 148.1.3.8 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › ClpB_D2-small | 0.88 | 74.0 | 7.66e-01 | 100.0% | 93.0% |
| 4391280 | 148.1.3.8 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › ClpB_D2-small | 0.88 | 74.0 | 7.77e-01 | 99.1% | 97.9% |
| 4089761 | 148.1.3.8 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › ClpB_D2-small | 0.88 | 71.0 | 7.73e-01 | 98.1% | 100.0% |
| 4571266 | 148.1.3.8 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › ClpB_D2-small | 0.88 | 72.0 | 7.61e-01 | 99.1% | 95.8% |
| 1309645 | 148.1.3.8 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › ClpB_D2-small | 0.87 | 71.0 | 6.53e-01 | 98.1% | 67.7% |
| 3594854 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.87 | 73.0 | 7.67e-01 | 98.1% | 96.8% |
| 4363328 | 148.1.3.8 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › ClpB_D2-small | 0.87 | 73.0 | 7.77e-01 | 100.0% | 97.9% |
| 4198791 | 148.1.3.8 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › ClpB_D2-small | 0.87 | 70.0 | 7.58e-01 | 96.2% | 97.8% |
| 3839924 | 148.1.3.8 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › ClpB_D2-small | 0.87 | 72.0 | 7.55e-01 | 99.1% | 95.8% |
| 3387640 | 148.1.3.8 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › ClpB_D2-small | 0.87 | 70.0 | 7.61e-01 | 97.2% | 98.9% |
| 3969278 | 148.1.3.8 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › ClpB_D2-small | 0.87 | 72.0 | 7.63e-01 | 99.1% | 96.8% |
| 4015704 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.87 | 72.0 | 7.68e-01 | 99.1% | 98.9% |
| 4081190 | 148.1.3.8 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › ClpB_D2-small | 0.86 | 72.0 | 6.72e-01 | 100.0% | 72.3% |
| 3360121 | 148.1.3.8 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › ClpB_D2-small | 0.86 | 73.0 | 7.57e-01 | 100.0% | 95.0% |
| 4023701 | 148.1.3.261 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › ClpB_D2-small, AAA_lid_9 | 0.86 | 72.0 | 5.06e-01 | 100.0% | 31.3% |
| 3703884 | 148.1.3.8 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › ClpB_D2-small | 0.85 | 69.0 | 7.33e-01 | 98.1% | 95.8% |
| 4044739 | 148.1.3.8 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › ClpB_D2-small | 0.85 | 71.0 | 7.14e-01 | 98.1% | 88.6% |
| 3961087 | 148.1.3.8 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › ClpB_D2-small | 0.82 | 75.0 | 7.56e-01 | 100.0% | 96.2% |
| 3004432 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.82 | 70.0 | 7.22e-01 | 100.0% | 96.0% |
| 1383593 | 148.1.3.8 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › ClpB_D2-small | 0.82 | 68.0 | 6.94e-01 | 100.0% | 91.2% |
| 3983704 | 148.1.3.8 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › ClpB_D2-small | 0.81 | 70.0 | 7.15e-01 | 99.1% | 94.2% |
| 3669409 | 148.1.3.8 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › ClpB_D2-small | 0.80 | 71.0 | 7.32e-01 | 97.2% | 99.0% |
| 3272719 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.80 | 71.0 | 7.28e-01 | 97.2% | 100.0% |
| 4388243 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.78 | 67.0 | 4.51e-01 | 100.0% | 26.9% |
| 3810079 | 148.1.3.211 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › PF26587 | 0.73 | 55.0 | 6.03e-01 | 92.5% | 98.8% |
| 3987817 | 148.1.3.26 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_9 | 0.63 | 54.0 | 5.26e-01 | 94.3% | 94.2% |
| 3194523 | 148.1.3.212 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_13 | 0.63 | 53.0 | 5.21e-01 | 94.3% | 83.5% |
| 3960618 | 5050.1.1.0 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter | 0.58 | 40.0 | 3.89e-01 | 71.7% | 76.7% |
| 3933378 | 5001.1.1.60 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Srx | 0.54 | 44.0 | 3.44e-01 | 90.6% | 83.2% |
| 4131557 | 2004.1.1.19 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Ras | 0.54 | 38.0 | 3.01e-01 | 75.5% | 86.3% |
| 3971108 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.53 | 32.0 | 3.43e-01 | 85.8% | 68.9% |
| 4017193 | 5104.1.1.2 ↗ | a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › CDC45 | 0.52 | 30.0 | 3.14e-01 | 88.7% | 61.1% |
| 5051542 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.51 | 42.0 | 3.52e-01 | 90.6% | 65.3% |
| 3932050 | 1128.1.1.1 ↗ | alpha bundles › LYR protein › LYR protein › LYR protein › Complex1_LYR | 0.51 | 39.0 | 3.86e-01 | 100.0% | 78.2% |
| 3856045 | 5001.1.1.5 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_3 | 0.50 | 44.0 | 3.28e-01 | 100.0% | 62.4% |
| 3887272 | 386.1.1.41 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf_C2H2_ZHX | 0.50 | 35.0 | 3.86e-01 | 73.6% | 100.0% |
D4
medium
residues 394-477
Domain cluster:
rep: IMGVR_UViG_3300025446_000097-3300025446-Ga0208038_10008231__D13-79
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF07724.21 best | AAA_2 | 27.5 | 4.10e-06 | 50.0% | 25.3% |
CATH (9)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1r6bX04 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.94 | 87.0 | 6.32e-01 | 100.0% | 41.1% |
| 5vjhB03 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.92 | 88.0 | 6.29e-01 | 100.0% | 39.9% |
| 1kxpD03 | 1.10.246.10 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › | 0.62 | 47.0 | 4.65e-01 | 81.0% | 100.0% |
| 4xkyA00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.55 | 41.0 | 2.86e-01 | 79.8% | 38.9% |
| 1ygmA01 | 1.10.220.90 | Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › Mistic | 0.55 | 37.0 | 3.68e-01 | 70.2% | 100.0% |
| 3fvvA02 | 1.20.1440.100 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › SG protein - dephosphorylation function | 0.53 | 33.0 | 3.52e-01 | 86.9% | 70.7% |
| 1c9bA01 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.53 | 44.0 | 4.25e-01 | 95.2% | 100.0% |
| 3h4cA01 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.52 | 42.0 | 4.12e-01 | 90.5% | 88.5% |
| 2l2dA00 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.51 | 33.0 | 3.53e-01 | 100.0% | 75.3% |
ECOD (18)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3513398 | 2004.1.1.153 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_2 | 0.95 | 92.0 | 7.56e-01 | 100.0% | 62.2% |
| None | — | 0.95 | 91.0 | 6.37e-01 | 100.0% | 38.7% | |
| 4228388 | 2004.1.1.258 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA,AAA_2 | 0.94 | 90.0 | 5.56e-01 | 100.0% | 21.0% |
| 3979234 | 2004.1.1.153 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_2 | 0.94 | 90.0 | 6.32e-01 | 100.0% | 39.5% |
| 3961063 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.93 | 89.0 | 5.90e-01 | 100.0% | 30.5% |
| 3291637 | 2004.1.1.153 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_2 | 0.93 | 89.0 | 5.90e-01 | 100.0% | 31.8% |
| 3839304 | 2004.1.1.153 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_2 | 0.91 | 87.0 | 6.25e-01 | 100.0% | 40.5% |
| 4391279 | 2004.1.1.153 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_2 | 0.91 | 83.0 | 5.84e-01 | 97.6% | 36.0% |
| 4825677 | 148.1.3.201 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_2 | 0.89 | 83.0 | 6.66e-01 | 100.0% | 57.5% |
| None | — | 0.89 | 83.0 | 6.20e-01 | 100.0% | 45.0% | |
| 1931021 | 2004.1.1.153 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_2 | 0.81 | 76.0 | 6.65e-01 | 100.0% | 72.3% |
| 2034199 | 2004.1.1.154 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_2,AAA_5 | 0.81 | 76.0 | 6.62e-01 | 100.0% | 71.4% |
| 2034195 | 2004.1.1.153 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_2 | 0.81 | 76.0 | 6.68e-01 | 100.0% | 73.3% |
| 2642908 | 2004.1.1.154 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_2,AAA_5 | 0.81 | 75.0 | 6.27e-01 | 100.0% | 63.2% |
| 2642909 | 2004.1.1.258 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA,AAA_2 | 0.81 | 75.0 | 5.89e-01 | 100.0% | 52.8% |
| 5078213 | 3896.1.2.0 ↗ | alpha duplicates or obligate multimers › Intramembrane CDP-DAG synthetase-related › Intramembrane CDP-DAG synthetase-related › Intramembrane CDP-archaeol synthase | 0.61 | 44.0 | 3.68e-01 | 76.2% | 79.3% |
| 5060856 | 3636.1.1.0 ↗ | a+b two layers › XPD arch domain › XPD arch domain › XPD arch domain | 0.54 | 43.0 | 3.81e-01 | 91.7% | 83.0% |
| 3280959 | 3636.1.1.0 ↗ | a+b two layers › XPD arch domain › XPD arch domain › XPD arch domain | 0.52 | 42.0 | 3.60e-01 | 91.7% | 73.1% |