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SRR1747018_scaffold_0_prodigal-single.1__X__X__00281

Bact-Vir

SRR1747018_scaffold_0_prodigal-single.1__X__X__00281

Identity

Kingdom:
phage

Quality

74.0 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-83
PDB
Domain cluster: representative
CATH (21)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2rd3D00 1.20.910.10 Mainly Alpha › Up-down Bundle › Heme Oxygenase; Chain A › Heme oxygenase-like 0.78 56.0 4.03e-01 75.9% 28.4%
2gv9A05 1.10.287.690 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › B family DNA polymerase, finger domain 0.73 49.0 5.56e-01 75.9% 94.9%
2rdcA00 1.10.287.800 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › protein ne1242 0.71 53.0 4.49e-01 79.5% 48.9%
3a8pA02 6.10.140.680 Special › Helix non-globular › Helix Hairpins › 0.70 55.0 4.97e-01 85.5% 98.2%
4fxdA04 3.90.1600.10 Alpha Beta › Alpha-Beta Complex › Palm domain of DNA polymerase › B family DNA polymerase, palm domain 0.70 52.0 4.26e-01 79.5% 62.1%
2mpkA00 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.69 47.0 4.94e-01 71.1% 78.4%
1zpyA00 6.10.140.1960 Special › Helix non-globular › Helix Hairpins › 0.69 50.0 4.87e-01 77.1% 69.2%
4l0rB00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.69 50.0 5.32e-01 78.3% 87.7%
3o6xA02 1.20.120.1560 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.68 56.0 4.68e-01 91.6% 73.6%
2rkhA02 1.20.1280.20 Mainly Alpha › Up-down Bundle › Monooxygenase › HscB, C-terminal domain 0.68 49.0 5.07e-01 77.1% 81.6%
4v1gA00 1.20.20.10 Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C 0.66 45.0 4.53e-01 71.1% 97.6%
1f7uA02 1.10.730.10 Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1 0.65 44.0 3.90e-01 73.5% 47.2%
1sg2A00 3.30.910.20 Alpha Beta › 2-Layer Sandwich › Protein Binding, DinI Protein; Chain A › Skp domain 0.65 46.0 3.89e-01 74.7% 44.7%
4abmD00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.65 48.0 4.98e-01 79.5% 92.2%
7t7kA01 1.20.930.60 Mainly Alpha › Up-down Bundle › Transcription Elongation Factor S-II; Chain A › 0.62 47.0 4.25e-01 83.1% 70.3%
4dciA00 6.10.140.1110 Special › Helix non-globular › Helix Hairpins › 0.61 48.0 4.01e-01 85.5% 57.1%
3fppA03 6.10.140.1990 Special › Helix non-globular › Helix Hairpins › 0.60 46.0 4.62e-01 85.5% 84.1%
2xubA05 6.10.140.1450 Special › Helix non-globular › Helix Hairpins › 0.58 43.0 4.13e-01 80.7% 88.5%
2gd5A00 6.10.140.1230 Special › Helix non-globular › Helix Hairpins › 0.57 46.0 3.98e-01 92.8% 73.9%
2x2vA00 1.20.20.10 Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C 0.57 40.0 4.30e-01 78.3% 91.2%
7k3zG01 3.50.7.10 Alpha Beta › 3-Layer(bba) Sandwich › GroEL › GroEL 0.56 46.0 3.42e-01 90.4% 77.0%
ECOD (14)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3729252 3755.3.1.0 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.76 60.0 5.41e-01 85.5% 61.7%
4950607 223.1.1.2 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS 0.76 60.0 4.58e-01 88.0% 37.4%
4986977 605.1.1.0 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.75 51.0 5.70e-01 71.1% 92.3%
5053661 2011.1.1.8 ↗ a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases › Peptidase_M28 0.72 54.0 3.52e-01 80.7% 25.0%
3956906 605.1.1.4 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA_3 0.71 53.0 5.56e-01 80.7% 86.7%
4930292 605.1.1.0 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.71 53.0 5.66e-01 84.3% 95.7%
3697355 5086.1.1.0 ↗ alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.70 56.0 4.55e-01 85.5% 69.7%
3776620 3710.1.1.1 ↗ alpha bundles › Golgi to ER traffic protein 1 cytosolic domain › Golgi to ER traffic protein 1 cytosolic domain › Golgi to ER traffic protein 1 cytosolic domain › CHD5 0.70 51.0 4.05e-01 77.1% 69.2%
4397104 605.1.1.4 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA_3 0.68 54.0 5.60e-01 85.5% 94.7%
4032867 601.1.1.11 ↗ alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin › EcsB 0.68 49.0 4.13e-01 75.9% 89.3%
4033272 192.8.1.0 ↗ alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain 0.67 47.0 4.26e-01 81.9% 51.7%
5050139 192.2.1.0 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.66 48.0 5.02e-01 78.3% 85.3%
7793 5094.1.1.1 ↗ a+b duplicates or obligate multimers › OmpH-like › OmpH-like › OmpH-like › OmpH 0.66 47.0 3.95e-01 74.7% 44.1%
5029642 5058.1.1.0 ↗ alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region 0.61 48.0 4.63e-01 85.5% 82.1%