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SRR1747018_scaffold_13_prodigal-single.1__X__X__00020
Bact-VirSRR1747018_scaffold_13_prodigal-single.1__X__X__00020
Identity
- Kingdom:
- phage
Quality
80.4
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 16-138
Domain cluster:
rep: aot2015-SM42_SRR1761719_Peru_trim_clean_trim_clean_scaffold_4_curated_closed_complete_prodigal-single.1__X__X__00190__D327-342_522-614
CATH (15)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5m1pB00 | 3.30.420.240 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › | 0.83 | 51.0 | 4.34e-01 | 95.9% | 40.2% |
| 1p65A00 | 6.10.140.90 | Special › Helix non-globular › Helix Hairpins › | 0.61 | 25.0 | 3.65e-01 | 96.7% | 80.7% |
| 8dkrB01 | 3.30.420.240 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › | 0.59 | 51.0 | 4.06e-01 | 90.2% | 54.1% |
| 4ifeA02 | 3.30.420.240 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › | 0.59 | 51.0 | 4.11e-01 | 91.9% | 52.4% |
| 3ltoA02 | 3.30.70.890 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › GHMP kinase, C-terminal domain | 0.58 | 32.0 | 3.10e-01 | 71.5% | 47.8% |
| 4f3nA00 | 3.40.50.12710 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.56 | 43.0 | 3.06e-01 | 80.5% | 61.0% |
| 1f02T00 | 4.10.820.10 | Few Secondary Structures › Irregular › Translocated Intimin Receptor; Chain T › Translocated intimin receptor, central domain | 0.56 | 26.0 | 3.52e-01 | 88.6% | 83.3% |
| 1vwxg01 | 6.20.370.70 | Special › Other non-globular › Rhinovirus 14, subunit 4 › | 0.55 | 17.0 | 3.09e-01 | 72.4% | 91.9% |
| 2b0lC00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.54 | 29.0 | 3.28e-01 | 80.5% | 66.0% |
| 2mkyA00 | 3.30.70.1530 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Hypothetical protein rpa1041 | 0.54 | 26.0 | 3.50e-01 | 87.8% | 94.8% |
| 6ks6Z01 | 1.10.560.10 | Mainly Alpha › Orthogonal Bundle › GROEL; domain 1 › GroEL-like equatorial domain | 0.53 | 44.0 | 3.48e-01 | 90.2% | 94.8% |
| 3ezjA02 | 3.30.1370.120 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › | 0.53 | 28.0 | 3.60e-01 | 90.2% | 91.2% |
| 4wxaA00 | 3.30.310.50 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Alpha-D-phosphohexomutase, C-terminal domain | 0.52 | 32.0 | 3.78e-01 | 92.7% | 90.5% |
| 1js3A03 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.52 | 34.0 | 3.79e-01 | 94.3% | 85.6% |
| 3l4gB03 | 3.30.56.10 | Alpha Beta › 2-Layer Sandwich › Phenylalanyl-tRNA Synthetase; Chain B, domain 1 › | 0.50 | 27.0 | 3.32e-01 | 91.9% | 85.1% |
ECOD (9)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3164493 | 2484.1.1.76 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Terminase_3C | 0.57 | 52.0 | 4.17e-01 | 97.6% | 53.3% |
| 3900258 | 3169.1.1.1 ↗ | a+b two layers › Carboxyl terminal domain of human deltex 3-like › Carboxyl terminal domain of human deltex 3-like › Carboxyl terminal domain of human deltex 3-like › DTC | 0.54 | 26.0 | 2.57e-01 | 91.9% | 39.8% |
| 4965091 | 101.1.2.908 ↗ | alpha arrays › HTH › HTH › winged helix domain › DUF5787 | 0.54 | 27.0 | 3.20e-01 | 75.6% | 68.8% |
| 3282985 | 101.1.2.508 ↗ | alpha arrays › HTH › HTH › winged helix domain › PF25872 | 0.53 | 27.0 | 3.10e-01 | 74.0% | 67.1% |
| 3626235 | 5001.1.1.1 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 | 0.52 | 41.0 | 3.09e-01 | 86.2% | 89.5% |
| 3937515 | 5001.1.1.1 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 | 0.51 | 43.0 | 3.19e-01 | 91.1% | 94.2% |
| 3990199 | 5001.1.1.0 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like | 0.51 | 41.0 | 2.97e-01 | 86.2% | 86.8% |
| 3195155 | 327.11.2.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) | 0.51 | 28.0 | 3.55e-01 | 88.6% | 94.3% |
| 3523606 | 5001.1.1.1 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 | 0.50 | 39.0 | 2.80e-01 | 83.7% | 91.3% |