←Back to structures
SRR1747018_scaffold_13_prodigal-single.1__X__X__00119
Bact-VirSRR1747018_scaffold_13_prodigal-single.1__X__X__00119
Identity
- Kingdom:
- phage
Quality
68.6
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 9-80
Domain cluster:
representative
CATH (12)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3ddcB00 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.67 | 42.0 | 3.45e-01 | 100.0% | 34.6% |
| 2mc2A00 | 2.80.10.50 | Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › | 0.63 | 55.0 | 4.03e-01 | 100.0% | 96.6% |
| 1xf1A05 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.60 | 42.0 | 3.80e-01 | 100.0% | 52.5% |
| 5t89Y06 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.60 | 43.0 | 3.96e-01 | 100.0% | 58.7% |
| 2pstX00 | 3.90.820.10 | Alpha Beta › Alpha-Beta Complex › Rubredoxin-like › Structural Genomics, Unknown Function 30-nov-00 1gh9 Mol_id | 0.57 | 40.0 | 4.32e-01 | 84.7% | 86.9% |
| 2pttB00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.55 | 44.0 | 3.86e-01 | 100.0% | 58.3% |
| 2cofA00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.55 | 31.0 | 2.82e-01 | 81.9% | 35.5% |
| 1zq1A01 | 2.30.30.520 | Mainly Beta › Roll › SH3 type barrels. › | 0.54 | 39.0 | 3.85e-01 | 97.2% | 72.7% |
| 1b3qB03 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.54 | 29.0 | 3.03e-01 | 100.0% | 48.5% |
| 1i7dA03 | 2.70.20.10 | Mainly Beta › Distorted Sandwich › Topoisomerase I; domain 3 › Topoisomerase I, domain 3 | 0.54 | 48.0 | 3.84e-01 | 100.0% | 94.3% |
| 4ybnB00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.51 | 37.0 | 2.69e-01 | 100.0% | 26.8% |
| 2jxtA01 | 3.10.20.10 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.51 | 34.0 | 3.44e-01 | 100.0% | 67.1% |
ECOD (36)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3839740 | 264.2.1.0 ↗ | beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain | 0.66 | 59.0 | 4.71e-01 | 100.0% | 95.7% |
| 5004275 | 330.1.1.14 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › RecT | 0.65 | 34.0 | 3.03e-01 | 100.0% | 34.3% |
| 4589827 | 264.2.1.0 ↗ | beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain | 0.62 | 56.0 | 4.64e-01 | 100.0% | 95.2% |
| 3965662 | 264.2.1.1 ↗ | beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain › Topoisom_bac | 0.62 | 56.0 | 4.47e-01 | 100.0% | 93.6% |
| 4031371 | 264.2.1.1 ↗ | beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain › Topoisom_bac | 0.60 | 53.0 | 4.30e-01 | 100.0% | 93.6% |
| 5080336 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.60 | 41.0 | 4.36e-01 | 97.2% | 81.2% |
| 4204001 | 264.2.1.0 ↗ | beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain | 0.59 | 53.0 | 4.18e-01 | 100.0% | 93.3% |
| 5042268 | 264.2.1.0 ↗ | beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain | 0.59 | 52.0 | 4.48e-01 | 100.0% | 98.3% |
| 4983859 | 264.2.1.0 ↗ | beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain | 0.58 | 52.0 | 4.38e-01 | 100.0% | 95.0% |
| 5029243 | 264.2.1.0 ↗ | beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain | 0.58 | 51.0 | 4.35e-01 | 100.0% | 98.3% |
| 4993088 | 264.2.1.1 ↗ | beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain › Topoisom_bac | 0.58 | 51.0 | 4.36e-01 | 100.0% | 97.5% |
| 4971256 | 264.2.1.0 ↗ | beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain | 0.57 | 50.0 | 4.21e-01 | 100.0% | 97.6% |
| 4210460 | 264.2.1.0 ↗ | beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain | 0.57 | 50.0 | 4.25e-01 | 100.0% | 95.8% |
| 5077969 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.57 | 39.0 | 3.77e-01 | 94.4% | 63.7% |
| 4292753 | 264.2.1.0 ↗ | beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain | 0.57 | 50.0 | 4.58e-01 | 100.0% | 96.8% |
| 3971638 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.57 | 40.0 | 3.47e-01 | 100.0% | 47.0% |
| 4542803 | 264.2.1.0 ↗ | beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain | 0.57 | 49.0 | 3.95e-01 | 100.0% | 94.0% |
| 4949720 | 264.2.1.0 ↗ | beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain | 0.56 | 50.0 | 4.30e-01 | 100.0% | 97.4% |
| 5036765 | 264.2.1.0 ↗ | beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain | 0.56 | 50.0 | 4.47e-01 | 100.0% | 96.0% |
| 4973809 | 264.2.1.0 ↗ | beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain | 0.56 | 50.0 | 4.21e-01 | 100.0% | 93.3% |
| 4981103 | 264.2.1.0 ↗ | beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain | 0.56 | 49.0 | 4.14e-01 | 100.0% | 94.4% |
| 5029441 | 264.2.1.1 ↗ | beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain › Topoisom_bac | 0.56 | 49.0 | 4.19e-01 | 100.0% | 94.2% |
| 4960285 | 264.2.1.0 ↗ | beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain | 0.55 | 49.0 | 4.20e-01 | 100.0% | 93.9% |
| 5000446 | 264.2.1.0 ↗ | beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain | 0.55 | 49.0 | 4.58e-01 | 100.0% | 95.6% |
| 3942573 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.55 | 41.0 | 4.49e-01 | 97.2% | 100.0% |
| 5051952 | 264.2.1.0 ↗ | beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain | 0.55 | 47.0 | 4.16e-01 | 98.6% | 99.1% |
| 4939739 | 3115.1.1.1 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A | 0.54 | 36.0 | 3.89e-01 | 100.0% | 86.4% |
| 4990154 | 264.2.1.0 ↗ | beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain | 0.53 | 47.0 | 4.13e-01 | 100.0% | 100.0% |
| 4929367 | 264.2.1.0 ↗ | beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain | 0.53 | 46.0 | 3.95e-01 | 100.0% | 97.5% |
| 5031820 | 264.2.1.0 ↗ | beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain | 0.53 | 46.0 | 3.95e-01 | 100.0% | 96.7% |
| 4375028 | 264.2.1.0 ↗ | beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain | 0.52 | 45.0 | 3.85e-01 | 100.0% | 94.4% |
| 5070755 | 264.2.1.0 ↗ | beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain | 0.52 | 46.0 | 3.94e-01 | 100.0% | 96.7% |
| 3817532 | 109.4.1.2179 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_3, DYW_deaminase, E_motif | 0.51 | 35.0 | 2.13e-01 | 73.6% | 9.2% |
| 5055120 | 264.2.1.0 ↗ | beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain | 0.51 | 44.0 | 3.79e-01 | 98.6% | 99.1% |
| 3778417 | 2007.5.1.21 ↗ | a/b three-layered sandwiches › Flavodoxin-like › SGNH hydrolase › SGNH hydrolase › NXPE4_C | 0.50 | 40.0 | 2.63e-01 | 100.0% | 20.7% |
| 3371543 | 109.4.1.1599 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, DYW_deaminase | 0.50 | 35.0 | 2.42e-01 | 73.6% | 88.2% |