←Back to structures

SRR1747018_scaffold_13_prodigal-single.1__X__X__00138

Bact-Vir

SRR1747018_scaffold_13_prodigal-single.1__X__X__00138

Identity

Kingdom:
phage

Quality

72.8 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-36
PDB
Domain cluster: representative
CATH (41)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6su1D01 2.40.33.10 Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like 0.78 60.0 4.49e-01 86.1% 42.2%
8eq1A01 2.40.33.10 Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like 0.77 60.0 4.48e-01 86.1% 42.0%
7r6yA01 2.40.33.10 Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like 0.76 59.0 4.38e-01 86.1% 40.2%
3gqbA01 2.40.30.20 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.74 56.0 4.56e-01 86.1% 49.3%
3n3fA01 3.40.1620.70 Alpha Beta › 3-Layer(aba) Sandwich › YefM-like fold › 0.73 51.0 4.91e-01 77.8% 62.8%
5i7pA02 2.40.10.330 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.73 56.0 5.17e-01 86.1% 77.1%
7oo1A01 2.40.33.10 Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like 0.73 59.0 4.64e-01 91.7% 48.1%
3hshE00 3.40.1620.70 Alpha Beta › 3-Layer(aba) Sandwich › YefM-like fold › 0.73 56.0 4.93e-01 86.1% 56.4%
1yu0A01 2.10.10.30 Mainly Beta › Ribbon › Seminal Fluid Protein PDC-109 (Domain B) › 0.73 55.0 4.91e-01 80.6% 58.8%
1ybiA02 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.73 51.0 3.41e-01 75.0% 48.9%
3prbA02 2.40.10.330 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.73 57.0 5.41e-01 88.9% 77.3%
4b6mB00 2.30.30.190 Mainly Beta › Roll › SH3 type barrels. › CAP Gly-rich-like domain 0.72 52.0 4.14e-01 80.6% 50.6%
1rl2A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.70 48.0 4.21e-01 72.2% 53.6%
1clwA00 2.160.20.20 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › 0.69 55.0 3.04e-01 86.1% 7.2%
3qtgA02 2.40.33.10 Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like 0.69 58.0 4.29e-01 97.2% 78.7%
1e6vC00 3.90.320.20 Alpha Beta › Alpha-Beta Complex › Lambda Exonuclease; Chain A › Methyl-coenzyme M reductase, gamma subunit 0.68 47.0 2.85e-01 75.0% 12.5%
4wfsA01 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.67 46.0 2.84e-01 72.2% 15.3%
1vq8A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.67 46.0 3.66e-01 72.2% 39.7%
1m5zA00 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.66 45.0 3.41e-01 72.2% 39.6%
2uuvB01 3.40.462.40 Alpha Beta › 3-Layer(aba) Sandwich › Vanillyl-alcohol Oxidase; Chain A, domain 3 › FAD-linked oxidase, cap domain/gating helix 0.66 44.0 2.65e-01 72.2% 9.4%
3we0A01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.61 42.0 2.55e-01 72.2% 9.6%
2gfoA00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.61 52.0 3.04e-01 100.0% 80.8%
6heiA01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.61 50.0 2.95e-01 100.0% 45.3%
1aisA02 3.30.310.10 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein 0.60 45.0 3.57e-01 83.3% 49.4%
2eo6A01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.60 41.0 2.95e-01 72.2% 24.1%
1r5mA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.59 45.0 2.74e-01 100.0% 39.6%
3mqgA02 2.20.70.110 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.58 41.0 4.13e-01 80.6% 74.4%
7uqyB01 3.90.550.10 Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.58 40.0 2.51e-01 72.2% 43.5%
4erdA00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.58 39.0 2.91e-01 72.2% 51.9%
5dezA03 3.10.50.10 Alpha Beta › Roll › Chitinase A; domain 3 › 0.57 39.0 3.23e-01 72.2% 36.5%
3m1cB01 3.30.390.170 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › 0.55 39.0 2.87e-01 77.8% 55.0%
3k8rA01 3.30.2020.40 Alpha Beta › 2-Layer Sandwich › NE0471 N-terminal domain-like › Uncharacterised protein PF10387, DUF2442 0.55 37.0 3.24e-01 72.2% 39.7%
2v05A02 2.10.270.10 Mainly Beta › Ribbon › left handed beta-beta-3-solenoid › Cholin Binding 0.55 41.0 2.83e-01 94.4% 30.2%
3c6kA02 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.55 41.0 3.78e-01 94.4% 100.0%
1kfwA02 3.10.50.10 Alpha Beta › Roll › Chitinase A; domain 3 › 0.55 38.0 3.35e-01 77.8% 82.5%
2k57A00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.55 39.0 3.58e-01 80.6% 78.2%
1y9lA00 2.40.128.230 Mainly Beta › Beta Barrel › Lipocalin › Pilot protein MxiM 0.54 38.0 2.88e-01 77.8% 53.6%
2ra2B00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.54 39.0 3.60e-01 80.6% 74.1%
5yrzB00 3.30.920.30 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Hypothetical protein. 0.54 37.0 3.28e-01 72.2% 44.8%
2fgtA02 3.10.450.310 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 36.0 2.96e-01 75.0% 32.9%
4obmA00 3.40.630.190 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › LCP protein 0.50 38.0 2.34e-01 80.6% 79.8%
ECOD (66)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4976953 375.1.1.63 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › LysW-like_globular 0.80 62.0 5.45e-01 86.1% 59.3%
3906671 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.80 63.0 6.14e-01 88.9% 95.0%
5071089 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.79 61.0 5.52e-01 86.1% 70.0%
3245395 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.79 61.0 3.48e-01 86.1% 11.7%
5069323 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.79 63.0 5.66e-01 88.9% 68.0%
3739111 2007.2.3.2 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › DSPc 0.79 53.0 3.31e-01 72.2% 13.9%
3777158 11.1.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Cadherin 0.78 53.0 3.01e-01 72.2% 7.2%
4927153 375.1.1.63 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › LysW-like_globular 0.78 60.0 5.25e-01 86.1% 61.8%
3528795 3761.1.1.0 ↗ beta duplicates or obligate multimers › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related 0.77 56.0 5.24e-01 83.3% 62.2%
4991056 375.1.1.63 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › LysW-like_globular 0.76 58.0 5.13e-01 86.1% 61.8%
4966178 375.1.1.357 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › PF30764 0.76 59.0 4.19e-01 88.9% 34.2%
4955635 375.1.1.63 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › LysW-like_globular 0.75 62.0 5.31e-01 100.0% 85.9%
3272167 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.75 52.0 3.02e-01 75.0% 10.6%
4938828 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.74 56.0 4.86e-01 86.1% 65.0%
3498702 3761.1.1.2 ↗ beta duplicates or obligate multimers › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Collagen_trimer 0.74 56.0 5.29e-01 86.1% 75.6%
3998685 73.1.1.1 ↗ beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain › FHA 0.74 53.0 4.01e-01 75.0% 48.2%
3926183 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.74 56.0 3.26e-01 86.1% 12.5%
5053268 375.1.2.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Desulforedoxin 0.73 51.0 5.00e-01 75.0% 72.5%
3476114 2484.1.1.1 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › HSP70 0.72 49.0 2.80e-01 72.2% 6.4%
3176896 270.1.1.2 ↗ beta barrels › FMT C-terminal domain-like › FMT C-terminal domain-related › FMT C-terminal domain-related › Formyl_trans_C 0.71 54.0 3.77e-01 86.1% 24.8%
3271846 391.1.2.0 ↗ few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related 0.70 56.0 4.97e-01 91.7% 81.8%
3401459 270.1.1.2 ↗ beta barrels › FMT C-terminal domain-like › FMT C-terminal domain-related › FMT C-terminal domain-related › Formyl_trans_C 0.70 50.0 3.63e-01 80.6% 26.4%
4512216 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.70 55.0 5.06e-01 91.7% 92.0%
3185909 394.1.1.2 ↗ few secondary structure elements › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › CBM_19 0.69 51.0 4.69e-01 80.6% 58.0%
3667522 223.2.1.31 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Intu_longin_2 0.69 56.0 3.57e-01 91.7% 40.6%
3532309 391.1.1.5 ↗ few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module › TILa 0.68 50.0 4.37e-01 83.3% 50.0%
4017465 928.1.1.0 ↗ few secondary structure elements › Bubble protein › Bubble protein › Bubble protein 0.68 49.0 4.50e-01 77.8% 57.1%
3507376 391.1.1.0 ↗ few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module 0.68 52.0 5.12e-01 86.1% 82.5%
3988987 702.1.1.3 ↗ beta duplicates or obligate multimers › beta-hairpin stack › beta-hairpin stack › beta-hairpin stack › Choline_bind_1,Choline_bind_2 0.67 51.0 3.83e-01 88.9% 50.0%
3987255 702.1.1.3 ↗ beta duplicates or obligate multimers › beta-hairpin stack › beta-hairpin stack › beta-hairpin stack › Choline_bind_1,Choline_bind_2 0.67 54.0 3.34e-01 100.0% 40.0%
3623943 391.1.1.7 ↗ few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module › Fn1_2 0.67 51.0 4.11e-01 86.1% 61.3%
3755669 391.1.1.5 ↗ few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module › TILa 0.66 49.0 4.85e-01 83.3% 75.0%
1826876 702.1.1.3 ↗ beta duplicates or obligate multimers › beta-hairpin stack › beta-hairpin stack › beta-hairpin stack › Choline_bind_1,Choline_bind_2 0.66 52.0 3.30e-01 100.0% 42.8%
None — 0.66 45.0 2.92e-01 75.0% 44.2%
4539369 391.1.1.5 ↗ few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module › TILa 0.65 49.0 4.38e-01 83.3% 54.5%
4943403 2003.1.5.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases 0.64 44.0 2.77e-01 75.0% 39.1%
4122447 12.1.1.24 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › Malt_amylase_C 0.64 49.0 3.80e-01 91.7% 74.7%
3779278 391.1.1.5 ↗ few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module › TILa 0.63 45.0 4.47e-01 80.6% 72.5%
3259156 2003.1.2.24 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.63 45.0 3.13e-01 72.2% 20.8%
2855565 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.63 48.0 3.72e-01 88.9% 53.3%
4819490 702.1.1.3 ↗ beta duplicates or obligate multimers › beta-hairpin stack › beta-hairpin stack › beta-hairpin stack › Choline_bind_1,Choline_bind_2 0.62 49.0 3.36e-01 100.0% 63.1%
3623362 5.1.5.112 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40, WD40_Gbeta 0.62 49.0 3.25e-01 100.0% 71.1%
4641081 391.1.2.18 ↗ few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related › TILa 0.62 44.0 4.04e-01 83.3% 54.5%
3231089 391.1.1.0 ↗ few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module 0.62 44.0 4.38e-01 83.3% 80.0%
3447259 2003.1.2.69 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › NAD_binding_8, Pyr_redox_3 0.62 42.0 2.66e-01 72.2% 12.9%
3398945 391.1.2.0 ↗ few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related 0.61 45.0 3.30e-01 86.1% 25.8%
4499078 391.1.1.0 ↗ few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module 0.61 45.0 3.82e-01 86.1% 45.7%
3635145 2003.1.2.58 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox, Pyr_redox_2 0.61 42.0 2.44e-01 72.2% 7.0%
3264116 5.1.5.76 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40, Beta-prop_NOL10_N 0.61 44.0 2.65e-01 91.7% 19.7%
5041142 5.1.4.181 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › BNR 0.61 49.0 2.73e-01 100.0% 23.3%
3518993 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.60 42.0 4.26e-01 72.2% 91.4%
3935301 391.1.2.11 ↗ few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related › VWC2L_2nd 0.60 45.0 4.05e-01 83.3% 54.5%
3988985 702.1.1.3 ↗ beta duplicates or obligate multimers › beta-hairpin stack › beta-hairpin stack › beta-hairpin stack › Choline_bind_1,Choline_bind_2 0.60 47.0 3.61e-01 100.0% 88.0%
3390232 384.1.1.0 ↗ few secondary structure elements › BPTI-like › BPTI-like › BPTI-like 0.59 46.0 4.18e-01 86.1% 74.0%
3248970 101.1.12.0 ↗ alpha arrays › HTH › HTH › HTH motif inserted in other structures 0.59 41.0 3.06e-01 75.0% 27.3%
3254597 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.58 41.0 2.43e-01 77.8% 10.7%
3714061 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.58 42.0 3.95e-01 86.1% 62.0%
4013709 2003.1.2.58 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox, Pyr_redox_2 0.57 41.0 2.39e-01 77.8% 26.8%
3852171 391.1.1.5 ↗ few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module › TILa 0.56 40.0 4.01e-01 83.3% 75.0%
3926192 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.56 39.0 2.74e-01 77.8% 35.7%
1289816 5.1.4.20 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Glu_cyclase_2 0.55 44.0 2.78e-01 100.0% 40.6%
3183666 2002.1.1.30 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_18 0.55 41.0 2.37e-01 75.0% 6.8%
3581826 284.2.1.1 ↗ a+b two layers › FKBP-like › Chitinase insertion domain › Chitinase insertion domain › Glyco_hydro_18 0.55 39.0 3.35e-01 75.0% 38.6%
3945544 4317.1.1.1 ↗ a+b duplicates or obligate multimers › YdfO-like › YdfO-like › YdfO-like › DUF1398 0.55 37.0 3.32e-01 72.2% 43.3%
3924602 384.1.1.1 ↗ few secondary structure elements › BPTI-like › BPTI-like › BPTI-like › Kunitz_BPTI 0.52 39.0 3.14e-01 83.3% 59.5%
2390779 109.1.1.11 ↗ alpha superhelices › Repetitive alpha hairpins › Glutathione S-transferase (GST)-C › Glutathione S-transferase (GST)-C › Arc1p_N_like 0.52 35.0 2.32e-01 72.2% 26.6%