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SRR1747018_scaffold_13_prodigal-single.1__X__X__00230

Bact-Vir

SRR1747018_scaffold_13_prodigal-single.1__X__X__00230

Identity

Kingdom:
phage

Quality

65.0 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 50-159_181-226
PDB
Domain cluster: rep: NC_029119.1__YP_009226683.1__AXJ01_gp007__00007__D144-284
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF27337.1 best YorF 41.3 1.70e-10 70.5% 38.5%
CATH (7)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1luzA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.64 35.0 4.57e-01 83.3% 97.6%
2khiA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.62 36.0 4.48e-01 76.9% 93.7%
2vl6A02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.62 43.0 5.00e-01 79.5% 98.2%
4bg7A00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.61 30.0 3.72e-01 96.8% 74.5%
4pz7A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.58 35.0 3.74e-01 70.5% 67.9%
3kf8A00 2.40.50.1040 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.57 47.0 4.24e-01 85.9% 66.7%
3vpbB03 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.53 33.0 3.73e-01 92.3% 84.8%
ECOD (26)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3229352 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.73 36.0 5.16e-01 78.8% 100.0%
3705888 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.70 46.0 5.35e-01 83.3% 90.4%
5000723 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.69 47.0 5.26e-01 84.6% 89.2%
3239000 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.68 46.0 5.02e-01 85.9% 81.5%
2429314 2.1.1.43 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Rep_fac-A_3 0.68 43.0 4.85e-01 88.5% 81.1%
3619973 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.68 36.0 4.91e-01 80.8% 100.0%
5004106 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.68 45.0 5.27e-01 91.0% 92.2%
3227979 2.1.1.126 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF272 0.67 39.0 5.01e-01 72.4% 100.0%
3797373 2.1.1.249 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › OB_DEPS-1_2nd 0.67 38.0 4.77e-01 91.7% 91.6%
4562544 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.65 42.0 4.84e-01 79.5% 87.8%
3173045 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.65 53.0 5.40e-01 85.9% 89.7%
3997614 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.64 40.0 4.57e-01 78.2% 81.7%
3506791 2.1.1.69 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RMI2 0.64 48.0 4.98e-01 85.9% 82.8%
3655399 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.64 47.0 5.18e-01 87.8% 93.6%
3444970 2.1.1.223 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF28721 0.63 48.0 5.19e-01 78.8% 93.8%
3230583 2.1.1.319 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF7038 0.63 38.0 4.62e-01 92.3% 93.0%
3824401 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.58 43.0 4.82e-01 87.8% 97.6%
3640971 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.57 49.0 5.00e-01 91.7% 92.3%
4137022 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.55 46.0 4.82e-01 92.3% 95.9%
5041479 206.1.3.21 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › RimK 0.55 34.0 3.20e-01 71.8% 48.9%
3719166 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.54 41.0 4.59e-01 86.5% 98.4%
3623113 245.1.1.1 ↗ a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 › RNase_PH_C 0.54 21.0 2.78e-01 75.0% 63.5%
5011365 206.1.3.21 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › RimK 0.53 33.0 3.02e-01 71.8% 46.3%
3800763 304.114.1.0 ↗ a+b two layers › Alpha-beta plaits › Family B DNA polymerase insertion domain › Family B DNA polymerase insertion domain 0.52 40.0 3.28e-01 78.8% 78.2%
5046855 206.1.3.21 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › RimK 0.52 32.0 2.98e-01 72.4% 45.8%
4029663 2.1.1.140 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SURF1 0.52 41.0 3.91e-01 82.7% 88.1%