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SRR1747018_scaffold_13_prodigal-single.1__X__X__00269
Bact-VirSRR1747018_scaffold_13_prodigal-single.1__X__X__00269
Identity
- Kingdom:
- phage
Quality
65.0
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-63
Domain cluster:
representative
CATH (15)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5efrA02 | 3.10.20.310 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac | 0.67 | 46.0 | 4.39e-01 | 80.6% | 61.6% |
| 3u1nB01 | 1.10.3210.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 | 0.64 | 57.0 | 3.61e-01 | 100.0% | 59.5% |
| 5zi2A02 | 3.90.110.10 | Alpha Beta › Alpha-Beta Complex › L-2-Hydroxyisocaproate Dehydrogenase; Chain A, domain 2 › Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal | 0.62 | 50.0 | 3.55e-01 | 88.7% | 30.4% |
| 1tzlA02 | 3.30.1920.50 | Alpha Beta › 2-Layer Sandwich › Phage tail proteins - 2 layer sandwich fold › | 0.62 | 31.0 | 3.19e-01 | 79.0% | 46.8% |
| 7sk7A01 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.62 | 48.0 | 3.23e-01 | 85.5% | 37.9% |
| 3spdA00 | 3.30.428.10 | Alpha Beta › 2-Layer Sandwich › HIT family, subunit A › HIT-like | 0.62 | 53.0 | 3.80e-01 | 100.0% | 69.0% |
| 7jgsG02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.59 | 39.0 | 3.36e-01 | 71.0% | 43.9% |
| 2iz4A02 | 2.20.25.590 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.58 | 32.0 | 3.54e-01 | 87.1% | 71.4% |
| 1d0xA04 | 1.20.120.720 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Myosin VI head, motor domain, U50 subdomain | 0.57 | 49.0 | 3.68e-01 | 91.9% | 42.3% |
| 3zcoA00 | 1.10.10.2450 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.56 | 40.0 | 3.22e-01 | 77.4% | 49.6% |
| 4e9jB01 | 3.30.1370.120 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › | 0.55 | 46.0 | 3.61e-01 | 93.5% | 89.9% |
| 2debA03 | 3.30.559.70 | Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Choline/Carnitine o-acyltransferase, domain 2 | 0.55 | 44.0 | 2.97e-01 | 95.2% | 67.4% |
| 2r44A02 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.53 | 37.0 | 2.77e-01 | 74.2% | 77.8% |
| 1hezE00 | 3.10.20.10 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.52 | 44.0 | 4.43e-01 | 93.5% | 100.0% |
| 1xjhA00 | 3.90.1280.10 | Alpha Beta › Alpha-Beta Complex › CBS domain Like › HSP33 redox switch-like | 0.50 | 32.0 | 3.28e-01 | 80.6% | 64.5% |
ECOD (16)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 7720 | 4060.1.1.1 ↗ | a+b duplicates or obligate multimers › NSP3 homodimer › NSP3 homodimer › NSP3 homodimer › Rota_NSP3 | 0.81 | 60.0 | 4.42e-01 | 79.0% | 37.0% |
| 5071300 | 601.27.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › MW0975(SA0943)-like › MW0975(SA0943)-like | 0.70 | 52.0 | 3.70e-01 | 79.0% | 30.6% |
| 3548818 | 5001.1.1.111 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1, 7TM_GPCR_Srw | 0.69 | 55.0 | 3.47e-01 | 85.5% | 32.3% |
| 4946324 | 5001.1.1.0 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like | 0.68 | 57.0 | 3.90e-01 | 91.9% | 39.1% |
| 1665938 | 312.1.1.2 ↗ | a+b three layers › HIT-like › HIT-related › HIT-related › HIT | 0.60 | 48.0 | 3.65e-01 | 93.5% | 37.5% |
| 4437407 | 327.10.1.3 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Ribosome-binding factor A (RbfA)-related › Ribosome-binding factor A (RbfA)-related › DnaA_N | 0.58 | 43.0 | 4.00e-01 | 85.5% | 64.7% |
| 3262946 | 101.1.2.381 ↗ | alpha arrays › HTH › HTH › winged helix domain › UBR1-like_wing | 0.56 | 39.0 | 3.40e-01 | 74.2% | 78.9% |
| 3742225 | 2011.1.1.8 ↗ | a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases › Peptidase_M28 | 0.55 | 48.0 | 3.11e-01 | 100.0% | 35.2% |
| 3589191 | 142.1.1.10 ↗ | alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › HTH_16 | 0.55 | 39.0 | 3.80e-01 | 77.4% | 78.6% |
| 3212725 | 2007.1.2.4 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › ANF_receptor | 0.54 | 45.0 | 3.05e-01 | 91.9% | 80.8% |
| 3407159 | 221.1.1.117 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › UBL_UBAC1 | 0.54 | 43.0 | 3.67e-01 | 91.9% | 88.2% |
| 3384326 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.54 | 40.0 | 3.76e-01 | 91.9% | 65.0% |
| 3332344 | 101.1.2.245 ↗ | alpha arrays › HTH › HTH › winged helix domain › PORR | 0.53 | 39.0 | 2.56e-01 | 79.0% | 97.8% |
| 4291842 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.53 | 44.0 | 3.23e-01 | 96.8% | 51.9% |
| 5045953 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.51 | 33.0 | 2.71e-01 | 80.6% | 32.8% |
| 3214845 | 10.12.1.0 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix | 0.50 | 37.0 | 2.38e-01 | 82.3% | 75.1% |