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SRR1747018_scaffold_15_prodigal-single.1__X__X__00028

Bact-Vir

SRR1747018_scaffold_15_prodigal-single.1__X__X__00028

Identity

Kingdom:
phage

Quality

92.1 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-159
PDB
Domain cluster: representative
CATH (3)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2yrvA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.63 28.0 3.32e-01 89.9% 58.4%
3m9qA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.58 27.0 3.95e-01 97.5% 98.6%
3k7uC00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.52 30.0 3.71e-01 72.8% 89.8%
ECOD (9)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3647546 4.26.1.0 ↗ beta barrels › SH3 › Chromatin protein Cren7 › Chromatin protein Cren7 0.61 24.0 3.81e-01 80.4% 98.2%
3452042 708.1.1.0 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain 0.60 23.0 3.71e-01 80.4% 98.2%
3661180 2.1.1.223 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF28721 0.55 29.0 3.59e-01 73.4% 80.0%
4618627 259.1.1.2 ↗ a+b two layers › Ribosomal protein L31e-like › Ribosomal protein L31e/gp120 outer domain › Ribosomal protein L31e/gp120 outer domain › Ribosomal_L31e 0.54 29.0 3.48e-01 84.8% 76.0%
4278184 4.1.1.52 ↗ beta barrels › SH3 › SH3 › SH3 › ZapC_C 0.54 28.0 3.83e-01 70.9% 97.5%
3824181 375.1.1.21 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-ZPR1 0.53 22.0 3.23e-01 78.5% 91.7%
3886492 4.1.1.154 ↗ beta barrels › SH3 › SH3 › SH3 › DUF4772 0.52 27.0 3.60e-01 71.5% 100.0%
4958266 4312.1.1.0 ↗ a+b two layers › RelE-like › RelE-like › RelE-like 0.51 26.0 3.07e-01 81.0% 69.5%
3804854 376.1.2.2 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_2 0.50 35.0 4.03e-01 91.1% 99.1%
D2 high residues 169-329
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF18907.6 best DUF5662 66.0 4.50e-18 96.9% 82.2%
CATH (16)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6h5hA00 1.10.150.110 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › DNA polymerase beta, N-terminal domain-like 0.71 32.0 4.95e-01 73.3% 100.0%
4lzgA01 1.10.150.110 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › DNA polymerase beta, N-terminal domain-like 0.70 36.0 4.62e-01 95.0% 84.9%
3tm8B00 1.10.3210.10 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 0.69 64.0 5.10e-01 100.0% 83.1%
1c9bA01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.67 33.0 4.16e-01 95.7% 77.3%
1jkwA02 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.67 35.0 4.29e-01 98.1% 79.2%
1vfiA00 1.10.246.100 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › Vanadium-binding protein 2 0.63 23.0 2.93e-01 100.0% 52.6%
2yfaA02 1.20.1440.210 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 0.60 37.0 4.33e-01 98.1% 85.3%
1sj8A02 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.59 41.0 4.61e-01 77.0% 93.4%
2xi9A03 1.10.150.480 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 0.56 33.0 4.05e-01 77.0% 93.1%
3f7cA00 1.20.1590.10 Mainly Alpha › Up-down Bundle › YP_001051499.1 fold like › YP_001051499.1 domain like 0.53 38.0 3.58e-01 98.8% 59.3%
5h5mA02 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.53 35.0 3.85e-01 97.5% 81.5%
1f6fA00 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.51 30.0 2.92e-01 98.8% 48.6%
1rfzA00 1.10.3760.10 Mainly Alpha › Orthogonal Bundle › YutG-like › PgpA-like 0.51 38.0 3.85e-01 78.3% 76.2%
5gj7A01 1.10.540.10 Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain 0.51 33.0 3.68e-01 80.7% 82.4%
1uzbA01 3.40.605.10 Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 0.50 42.0 3.36e-01 90.1% 53.1%
3wvoC02 1.10.132.100 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › 0.50 38.0 4.17e-01 83.9% 97.7%
ECOD (10)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3828609 101.1.10.7 ↗ alpha arrays › HTH › HTH › Cyclin-like › Cyclin_C 0.71 37.0 4.46e-01 98.8% 73.6%
3277476 174.1.1.0 ↗ few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain 0.62 39.0 4.01e-01 100.0% 65.3%
4946658 101.1.10.0 ↗ alpha arrays › HTH › HTH › Cyclin-like 0.54 36.0 3.76e-01 88.2% 73.8%
5053357 101.1.10.0 ↗ alpha arrays › HTH › HTH › Cyclin-like 0.54 33.0 3.44e-01 87.0% 63.3%
352936 3813.1.1.1 ↗ alpha bundles › DUF416 › DUF416 › DUF416 › DUF416 0.53 38.0 3.58e-01 98.8% 59.3%
3594000 5054.1.1.0 ↗ alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels 0.53 39.0 3.77e-01 76.4% 73.7%
3283570 106.1.1.11 ↗ alpha arrays › Globin-like › Globin-like › Globin-like › RsbRD_N 0.52 39.0 4.09e-01 87.0% 84.8%
5073488 141.1.1.1 ↗ alpha bundles › Terpenoid synthases › Terpenoid synthases › Terpenoid synthases › polyprenyl_synt 0.52 43.0 3.34e-01 88.8% 46.6%
3259348 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.51 46.0 4.22e-01 100.0% 77.1%
3728368 633.26.1.0 ↗ alpha bundles › Bromodomain-like › SidC lipid-binding domain › SidC lipid-binding domain 0.51 36.0 3.49e-01 98.8% 64.4%