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SRR1747018_scaffold_15_prodigal-single.1XX__00048

Bact-Vir

SRR1747018_scaffold_15_prodigal-single.1__X__X__00048

Identity

Kingdom:: phage

Quality

52.0 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 388-502

PDB

D2 high residues 535-618

PDB

D3 medium residues 1-116

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01966.29 best	HD	32.4	1.40e-07	98.3%	80.2%

CATH (12)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1i36A02	1.10.1040.10	Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2	0.61	40.0	4.28e-01	91.4%	76.8%
3lomA00	1.10.600.10	Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase	0.56	39.0	2.96e-01	72.4%	38.5%
3o60A00	1.10.357.10	Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2	0.55	39.0	3.42e-01	74.1%	89.0%
4huqS00	1.10.1760.20	Mainly Alpha › Orthogonal Bundle › Arp2/3 complex 21 kDa subunit ARPC3 ›	0.55	40.0	3.67e-01	78.4%	95.7%
2lefA00	1.10.30.10	Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain	0.54	29.0	3.24e-01	87.9%	66.3%
2p0tA02	1.10.60.30	Mainly Alpha › Orthogonal Bundle › Diphtheria Toxin Repressor; domain 2 › PSPTO4464-like domains	0.53	28.0	3.35e-01	83.6%	77.8%
1vi0A02	1.10.357.10	Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2	0.53	38.0	3.61e-01	76.7%	93.1%
4dvyP01	1.10.357.130	Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 ›	0.52	41.0	3.48e-01	85.3%	93.4%
5ux1D00	1.20.1260.10	Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle	0.51	39.0	3.32e-01	81.9%	83.2%
2q14B01	1.10.3210.10	Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432	0.51	42.0	3.43e-01	91.4%	62.7%
5hb0D01	1.20.120.1880	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleoporin, helical C-terminal domain	0.50	41.0	3.27e-01	89.7%	45.0%
1ulyA02	1.10.20.10	Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Histone, subunit A	0.50	31.0	3.31e-01	84.5%	70.3%

ECOD (7)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
5052475	131.1.1.3 ↗	alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD	0.77	57.0	5.48e-01	95.7%	67.7%
3970178	5060.2.1.0 ↗	alpha bundles › V-type ATP synthase subunit C › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain	0.58	41.0	3.81e-01	94.8%	57.9%
3679234	188.1.1.4 ↗	alpha arrays › Nuclear receptor ligand-binding domain › Nuclear receptor ligand-binding domain › Nuclear receptor ligand-binding domain › PF28741	0.56	50.0	4.21e-01	100.0%	93.7%
3572779	3855.1.1.1 ↗	alpha arrays › Serum amyloid A-1 protein › Serum amyloid A-1 protein › Serum amyloid A-1 protein › SAA	0.55	41.0	4.18e-01	78.4%	81.8%
4662596	1075.1.1.19 ↗	alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › ABCG5/ABCG8 transmembrane domain › ABC2_membrane_4	0.52	40.0	3.27e-01	81.0%	97.4%
3809186	109.27.1.3 ↗	alpha superhelices › Repetitive alpha hairpins › BACK domain › BACK domain › NPH3	0.51	38.0	3.29e-01	83.6%	50.0%
3590372	1075.1.2.1 ↗	alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › MacB transmembrane domain › FtsX	0.50	37.0	3.28e-01	79.3%	95.0%

D4 medium residues 229-365

PDB