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SRR1747018_scaffold_15_prodigal-single.1__X__X__00053
Bact-VirSRR1747018_scaffold_15_prodigal-single.1__X__X__00053
Identity
- Kingdom:
- phage
Quality
86.7
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-85
Domain cluster:
rep: SRR1747052_scaffold_19_prodigal-single.1__X__X__00043__D2-72
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF09707.16 best | Cas_Cas2CT1978 | 52.4 | 6.60e-14 | 97.6% | 86.1% |
CATH (18)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4makB00 | 3.30.70.240 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.92 | 76.0 | 7.95e-01 | 85.7% | 97.4% |
| 8hi1E01 | 3.30.70.240 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.91 | 85.0 | 8.43e-01 | 100.0% | 98.9% |
| 1zpwX00 | 3.30.70.240 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.78 | 57.0 | 5.77e-01 | 75.0% | 80.5% |
| 1hczA02 | 2.40.50.100 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain | 0.69 | 27.0 | 3.19e-01 | 84.5% | 50.8% |
| 1gmuA01 | 3.30.70.790 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › UreE, C-terminal domain | 0.67 | 43.0 | 4.75e-01 | 75.0% | 82.1% |
| 1earA02 | 3.30.70.790 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › UreE, C-terminal domain | 0.67 | 43.0 | 4.69e-01 | 75.0% | 79.7% |
| 3on9A00 | 2.60.240.20 | Mainly Beta › Sandwich › Viral Chemokine Inhibitor; Chain A › | 0.65 | 52.0 | 4.19e-01 | 86.9% | 86.9% |
| 3l2pA02 | 3.30.1490.70 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › | 0.58 | 36.0 | 3.88e-01 | 82.1% | 73.2% |
| 4fz2A01 | 3.40.1170.20 | Alpha Beta › 3-Layer(aba) Sandwich › MutS, DNA mismatch repair protein, domain I › tRNA intron endonuclease, N-terminal domain | 0.54 | 34.0 | 3.52e-01 | 89.3% | 68.0% |
| 2x49A04 | 3.40.50.12790 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › FHIPEP family, domain 4 | 0.52 | 39.0 | 3.74e-01 | 81.0% | 75.8% |
| 2vfrA03 | 3.30.70.2530 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.52 | 37.0 | 3.69e-01 | 75.0% | 95.4% |
| 2o8eA01 | 3.40.1170.10 | Alpha Beta › 3-Layer(aba) Sandwich › MutS, DNA mismatch repair protein, domain I › DNA repair protein MutS, domain I | 0.51 | 39.0 | 3.52e-01 | 83.3% | 64.5% |
| 5aykA07 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.51 | 36.0 | 3.28e-01 | 73.8% | 92.2% |
| 2q0oA01 | 3.30.450.80 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Transcription factor LuxR-like, autoinducer-binding domain | 0.51 | 39.0 | 3.18e-01 | 91.7% | 42.3% |
| 2i9wA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.50 | 40.0 | 3.19e-01 | 86.9% | 91.5% |
| 1sezA01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.50 | 39.0 | 3.12e-01 | 89.3% | 40.0% |
| 3kxtA00 | 2.30.30.610 | Mainly Beta › Roll › SH3 type barrels. › Chromatin protein Cren7 | 0.50 | 22.0 | 2.66e-01 | 82.1% | 57.1% |
| 3qp1A00 | 3.30.450.80 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Transcription factor LuxR-like, autoinducer-binding domain | 0.50 | 40.0 | 3.24e-01 | 90.5% | 44.9% |
ECOD (32)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3031022 | 304.56.1.1 ↗ | a+b two layers › Alpha-beta plaits › CRISPR associated protein Cas2-like › CRISPR associated protein Cas2-like › Cas_Cas2CT1978 | 0.90 | 85.0 | 8.16e-01 | 100.0% | 92.5% |
| 2098117 | 304.56.1.1 ↗ | a+b two layers › Alpha-beta plaits › CRISPR associated protein Cas2-like › CRISPR associated protein Cas2-like › Cas_Cas2CT1978 | 0.88 | 83.0 | 7.93e-01 | 100.0% | 90.5% |
| 4944359 | 304.56.1.0 ↗ | a+b two layers › Alpha-beta plaits › CRISPR associated protein Cas2-like › CRISPR associated protein Cas2-like | 0.83 | 60.0 | 6.05e-01 | 75.0% | 80.0% |
| 4316258 | 304.56.1.2 ↗ | a+b two layers › Alpha-beta plaits › CRISPR associated protein Cas2-like › CRISPR associated protein Cas2-like › CRISPR_Cas2 | 0.83 | 60.0 | 6.05e-01 | 75.0% | 85.9% |
| 4519317 | 304.56.1.2 ↗ | a+b two layers › Alpha-beta plaits › CRISPR associated protein Cas2-like › CRISPR associated protein Cas2-like › CRISPR_Cas2 | 0.83 | 60.0 | 6.00e-01 | 75.0% | 85.9% |
| 4321822 | 304.56.1.2 ↗ | a+b two layers › Alpha-beta plaits › CRISPR associated protein Cas2-like › CRISPR associated protein Cas2-like › CRISPR_Cas2 | 0.82 | 60.0 | 6.19e-01 | 76.2% | 85.0% |
| 4123628 | 304.56.1.2 ↗ | a+b two layers › Alpha-beta plaits › CRISPR associated protein Cas2-like › CRISPR associated protein Cas2-like › CRISPR_Cas2 | 0.81 | 59.0 | 6.04e-01 | 75.0% | 83.7% |
| 4170381 | 304.56.1.2 ↗ | a+b two layers › Alpha-beta plaits › CRISPR associated protein Cas2-like › CRISPR associated protein Cas2-like › CRISPR_Cas2 | 0.80 | 58.0 | 5.58e-01 | 75.0% | 71.3% |
| 3954020 | 304.56.1.2 ↗ | a+b two layers › Alpha-beta plaits › CRISPR associated protein Cas2-like › CRISPR associated protein Cas2-like › CRISPR_Cas2 | 0.79 | 57.0 | 5.54e-01 | 75.0% | 69.9% |
| 4414821 | 304.56.1.2 ↗ | a+b two layers › Alpha-beta plaits › CRISPR associated protein Cas2-like › CRISPR associated protein Cas2-like › CRISPR_Cas2 | 0.79 | 58.0 | 5.56e-01 | 76.2% | 76.6% |
| 4857408 | 304.56.1.0 ↗ | a+b two layers › Alpha-beta plaits › CRISPR associated protein Cas2-like › CRISPR associated protein Cas2-like | 0.78 | 64.0 | 6.76e-01 | 100.0% | 97.3% |
| 4611550 | 304.56.1.2 ↗ | a+b two layers › Alpha-beta plaits › CRISPR associated protein Cas2-like › CRISPR associated protein Cas2-like › CRISPR_Cas2 | 0.77 | 56.0 | 5.30e-01 | 76.2% | 66.0% |
| 5083953 | 304.56.1.2 ↗ | a+b two layers › Alpha-beta plaits › CRISPR associated protein Cas2-like › CRISPR associated protein Cas2-like › CRISPR_Cas2 | 0.77 | 55.0 | 5.68e-01 | 75.0% | 83.7% |
| 4889364 | 304.56.1.3 ↗ | a+b two layers › Alpha-beta plaits › CRISPR associated protein Cas2-like › CRISPR associated protein Cas2-like › Cas3_I-F_Cas2 | 0.74 | 68.0 | 5.99e-01 | 100.0% | 71.4% |
| 4565839 | 304.120.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in ThiI › Ferredoxin-like domain in ThiI | 0.69 | 45.0 | 5.13e-01 | 75.0% | 95.0% |
| 3916383 | 304.24.1.0 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like | 0.65 | 55.0 | 4.58e-01 | 97.6% | 67.1% |
| 5044372 | 1036.1.1.1 ↗ | a+b two layers › 60S ribosomal export protein NMD3 a+b domain › 60S ribosomal export protein NMD3 a+b domain › 60S ribosomal export protein NMD3 a+b domain › NMD3 | 0.63 | 48.0 | 4.40e-01 | 81.0% | 88.2% |
| 4952123 | 3986.2.1.0 ↗ | a+b two layers › GTP-binding protein lepA C-terminal domain-like › Antitoxin Dmd › Antitoxin Dmd | 0.61 | 40.0 | 4.61e-01 | 83.3% | 95.0% |
| 5070856 | 1036.1.1.1 ↗ | a+b two layers › 60S ribosomal export protein NMD3 a+b domain › 60S ribosomal export protein NMD3 a+b domain › 60S ribosomal export protein NMD3 a+b domain › NMD3 | 0.61 | 46.0 | 4.31e-01 | 83.3% | 87.3% |
| 4946164 | 1036.1.1.0 ↗ | a+b two layers › 60S ribosomal export protein NMD3 a+b domain › 60S ribosomal export protein NMD3 a+b domain › 60S ribosomal export protein NMD3 a+b domain | 0.61 | 46.0 | 4.32e-01 | 82.1% | 91.4% |
| 3672161 | 109.4.1.1254 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, E_motif | 0.60 | 47.0 | 3.22e-01 | 84.5% | 27.3% |
| 3277842 | 4187.1.1.1 ↗ | a+b two layers › NosL/MerB-like › NosL/MerB-like › NosL/MerB-like › MerB | 0.59 | 40.0 | 4.57e-01 | 95.2% | 100.0% |
| 3998804 | 304.9.1.0 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD | 0.58 | 40.0 | 4.08e-01 | 76.2% | 75.0% |
| 3691834 | 304.3.1.0 ↗ | a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain | 0.58 | 50.0 | 4.72e-01 | 100.0% | 99.0% |
| None | — | 0.56 | 42.0 | 3.21e-01 | 84.5% | 79.6% | |
| 4171345 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.55 | 40.0 | 3.84e-01 | 75.0% | 67.4% |
| 3798718 | 810.1.1.0 ↗ | a+b two layers › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) | 0.55 | 44.0 | 3.40e-01 | 86.9% | 58.9% |
| 3626805 | 810.1.1.1 ↗ | a+b two layers › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › ChaC | 0.55 | 43.0 | 3.36e-01 | 86.9% | 59.0% |
| 3611538 | 7.1.1.0 ↗ | beta barrels › PDZ domain › PDZ domain › PDZ domain | 0.54 | 31.0 | 3.63e-01 | 86.9% | 85.5% |
| 3954323 | 2003.1.5.53 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › tRNA_U5-meth_tr | 0.53 | 40.0 | 2.75e-01 | 83.3% | 47.2% |
| 4971395 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.52 | 37.0 | 3.64e-01 | 76.2% | 73.7% |
| 4212763 | 7.1.1.1 ↗ | beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ | 0.51 | 29.0 | 2.94e-01 | 83.3% | 52.9% |