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SRR1747018_scaffold_15_prodigal-single.1__X__X__00054
Bact-VirSRR1747018_scaffold_15_prodigal-single.1__X__X__00054
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 9-86
Domain cluster:
representative
CATH (57)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3nkdA01 | 3.100.10.20 | Alpha Beta › Ribosomal Protein L15; Chain: K; domain 2 › Ribosomal Protein L15; Chain: K; domain 2 › CRISPR-associated endonuclease Cas1, N-terminal domain | 0.95 | 90.0 | 8.77e-01 | 100.0% | 91.7% |
| 4w8kA01 | 3.100.10.20 | Alpha Beta › Ribosomal Protein L15; Chain: K; domain 2 › Ribosomal Protein L15; Chain: K; domain 2 › CRISPR-associated endonuclease Cas1, N-terminal domain | 0.88 | 84.0 | 7.91e-01 | 100.0% | 86.8% |
| 7cr6D01 | 3.100.10.20 | Alpha Beta › Ribosomal Protein L15; Chain: K; domain 2 › Ribosomal Protein L15; Chain: K; domain 2 › CRISPR-associated endonuclease Cas1, N-terminal domain | 0.88 | 77.0 | 7.56e-01 | 92.3% | 91.5% |
| 5fclE01 | 3.100.10.20 | Alpha Beta › Ribosomal Protein L15; Chain: K; domain 2 › Ribosomal Protein L15; Chain: K; domain 2 › CRISPR-associated endonuclease Cas1, N-terminal domain | 0.88 | 79.0 | 7.44e-01 | 94.9% | 86.7% |
| 4n06A01 | 3.100.10.20 | Alpha Beta › Ribosomal Protein L15; Chain: K; domain 2 › Ribosomal Protein L15; Chain: K; domain 2 › CRISPR-associated endonuclease Cas1, N-terminal domain | 0.86 | 78.0 | 7.73e-01 | 97.4% | 93.9% |
| 7mi4A02 | 3.100.10.20 | Alpha Beta › Ribosomal Protein L15; Chain: K; domain 2 › Ribosomal Protein L15; Chain: K; domain 2 › CRISPR-associated endonuclease Cas1, N-terminal domain | 0.84 | 74.0 | 7.56e-01 | 93.6% | 100.0% |
| 2yzsA01 | 3.100.10.20 | Alpha Beta › Ribosomal Protein L15; Chain: K; domain 2 › Ribosomal Protein L15; Chain: K; domain 2 › CRISPR-associated endonuclease Cas1, N-terminal domain | 0.84 | 74.0 | 7.36e-01 | 96.2% | 92.5% |
| 7kfuC01 | 3.100.10.20 | Alpha Beta › Ribosomal Protein L15; Chain: K; domain 2 › Ribosomal Protein L15; Chain: K; domain 2 › CRISPR-associated endonuclease Cas1, N-terminal domain | 0.81 | 71.0 | 7.26e-01 | 94.9% | 100.0% |
| 8d3lA01 | 3.100.10.20 | Alpha Beta › Ribosomal Protein L15; Chain: K; domain 2 › Ribosomal Protein L15; Chain: K; domain 2 › CRISPR-associated endonuclease Cas1, N-terminal domain | 0.80 | 70.0 | 6.74e-01 | 96.2% | 86.4% |
| 2pw9C03 | 3.40.140.10 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 | 0.65 | 59.0 | 4.83e-01 | 100.0% | 92.0% |
| 2hvwA00 | 3.40.140.10 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 | 0.63 | 54.0 | 4.29e-01 | 91.0% | 73.5% |
| 2iojA00 | 3.40.1390.20 | Alpha Beta › 3-Layer(aba) Sandwich › Udp-n-acetylmuramoylalanyl-d-glutamate--2,6- Diaminopimelate Ligase; Chain: A, domain 1 › HprK N-terminal domain-like | 0.63 | 54.0 | 4.66e-01 | 93.6% | 72.5% |
| 6vhyC01 | 3.40.50.12780 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ANL, N-terminal domain | 0.62 | 55.0 | 3.46e-01 | 98.7% | 30.2% |
| 6ks6Q03 | 3.50.7.10 | Alpha Beta › 3-Layer(bba) Sandwich › GroEL › GroEL | 0.62 | 55.0 | 4.41e-01 | 98.7% | 84.9% |
| 4phtY02 | 3.30.420.370 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › GspL cytoplasmic domain, C-terminal subdomain | 0.61 | 39.0 | 4.26e-01 | 73.1% | 82.3% |
| 6ks6E03 | 3.50.7.10 | Alpha Beta › 3-Layer(bba) Sandwich › GroEL › GroEL | 0.61 | 53.0 | 4.23e-01 | 98.7% | 83.1% |
| 2c1lA01 | 3.30.870.10 | Alpha Beta › 2-Layer Sandwich › Endonuclease; Chain A › Endonuclease Chain A | 0.60 | 53.0 | 4.05e-01 | 100.0% | 73.4% |
| 6ks6g03 | 3.50.7.10 | Alpha Beta › 3-Layer(bba) Sandwich › GroEL › GroEL | 0.60 | 53.0 | 4.23e-01 | 98.7% | 83.7% |
| 2inbA00 | 3.40.1350.10 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.60 | 52.0 | 4.45e-01 | 98.7% | 80.5% |
| 4gkbA00 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.59 | 51.0 | 3.62e-01 | 97.4% | 32.0% |
| 2gf2A01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.59 | 50.0 | 4.05e-01 | 98.7% | 84.6% |
| 2i71A01 | 3.40.50.10640 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SSO1389-like | 0.59 | 51.0 | 3.74e-01 | 100.0% | 83.4% |
| 7d27A02 | 3.40.1190.10 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain | 0.59 | 49.0 | 3.55e-01 | 93.6% | 89.6% |
| 3l6dA01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.58 | 51.0 | 4.07e-01 | 100.0% | 87.2% |
| 2v7bA01 | 3.40.50.12780 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ANL, N-terminal domain | 0.57 | 50.0 | 3.19e-01 | 98.7% | 31.6% |
| 4fixA01 | 3.90.550.60 | Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › | 0.57 | 48.0 | 3.07e-01 | 94.9% | 19.6% |
| 4fuqC01 | 3.40.50.12780 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ANL, N-terminal domain | 0.57 | 49.0 | 3.15e-01 | 98.7% | 30.9% |
| 7d73A01 | 3.90.550.10 | Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 0.57 | 49.0 | 3.51e-01 | 97.4% | 42.9% |
| 1r30A00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.56 | 48.0 | 3.28e-01 | 98.7% | 44.9% |
| 3o83A00 | 3.40.50.12780 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ANL, N-terminal domain | 0.56 | 49.0 | 3.09e-01 | 98.7% | 29.6% |
| 5ybwA02 | 3.40.50.1100 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.56 | 44.0 | 4.15e-01 | 93.6% | 68.4% |
| 1srqC02 | 3.40.50.11210 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Rap/Ran-GAP | 0.56 | 48.0 | 3.73e-01 | 98.7% | 77.2% |
| 1amuA02 | 3.40.50.980 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.56 | 49.0 | 4.09e-01 | 100.0% | 81.4% |
| 6sshA01 | 3.40.50.11210 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Rap/Ran-GAP | 0.55 | 48.0 | 3.69e-01 | 98.7% | 82.2% |
| 6xigA01 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.55 | 45.0 | 3.04e-01 | 91.0% | 60.7% |
| 2qv5A01 | 3.20.20.370 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycoside hydrolase/deacetylase | 0.55 | 48.0 | 3.44e-01 | 98.7% | 57.3% |
| 5z5cA02 | 3.40.50.1100 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.55 | 45.0 | 4.04e-01 | 92.3% | 64.8% |
| 3lv9A00 | 3.10.580.10 | Alpha Beta › Roll › CBS-domain › CBS-domain | 0.55 | 34.0 | 2.94e-01 | 100.0% | 36.9% |
| 1vmeB01 | 3.60.15.10 | Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like | 0.54 | 43.0 | 3.13e-01 | 91.0% | 44.6% |
| 5i45A00 | 3.40.50.2000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; | 0.54 | 47.0 | 3.60e-01 | 100.0% | 88.7% |
| 3n6xA02 | 3.40.50.11290 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.54 | 41.0 | 3.85e-01 | 83.3% | 100.0% |
| 5d84A02 | 3.40.50.1100 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.54 | 47.0 | 4.14e-01 | 94.9% | 67.6% |
| 1p5jA02 | 3.40.50.1100 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.54 | 45.0 | 4.22e-01 | 91.0% | 74.0% |
| 1tdjA02 | 3.40.50.1100 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.54 | 42.0 | 4.05e-01 | 92.3% | 72.8% |
| 4k36B00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.54 | 48.0 | 3.08e-01 | 98.7% | 36.3% |
| 5vbfA01 | 3.40.605.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 | 0.54 | 47.0 | 3.21e-01 | 98.7% | 76.7% |
| 1dk7A00 | 3.50.7.10 | Alpha Beta › 3-Layer(bba) Sandwich › GroEL › GroEL | 0.53 | 44.0 | 3.73e-01 | 98.7% | 78.8% |
| 5aj3K00 | 3.30.420.80 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribosomal protein S11/S14 | 0.53 | 42.0 | 3.58e-01 | 89.7% | 77.9% |
| 1s4nB00 | 3.90.550.10 | Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 0.53 | 43.0 | 2.91e-01 | 94.9% | 34.9% |
| 5i7wA02 | 3.40.50.1100 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.52 | 43.0 | 3.82e-01 | 91.0% | 64.0% |
| 5cvcA02 | 3.40.50.1100 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.52 | 45.0 | 4.16e-01 | 93.6% | 76.3% |
| 3h09B02 | 2.160.20.20 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › | 0.52 | 45.0 | 2.79e-01 | 100.0% | 24.3% |
| 4pagA01 | 3.40.50.1980 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain | 0.51 | 41.0 | 3.52e-01 | 91.0% | 83.1% |
| 3p0rA00 | 3.40.50.360 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Flavodoxin domain | 0.51 | 43.0 | 3.29e-01 | 98.7% | 98.1% |
| 3js6A01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.51 | 44.0 | 3.32e-01 | 98.7% | 97.0% |
| 3lzdA02 | 3.40.50.11850 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Diphthamide synthesis DPH1/DPH2 domain 2 | 0.51 | 43.0 | 3.97e-01 | 100.0% | 86.2% |
| 1vx7H01 | 3.90.930.12 | Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › Ribosomal protein L6 | 0.50 | 31.0 | 3.10e-01 | 87.2% | 56.5% |
ECOD (93)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4560474 | 3239.1.1.1 ↗ | alpha complex topology › Cas1 › Cas1 › Cas1 › Cas_Cas1 | 0.98 | 95.0 | 6.24e-01 | 100.0% | 29.8% |
| 3031029 | 3239.1.1.1 ↗ | alpha complex topology › Cas1 › Cas1 › Cas1 › Cas_Cas1 | 0.96 | 90.0 | 5.77e-01 | 100.0% | 24.9% |
| 3090020 | 3239.1.1.0 ↗ | alpha complex topology › Cas1 › Cas1 › Cas1 | 0.95 | 89.0 | 7.08e-01 | 100.0% | 55.5% |
| 1712635 | 3239.1.1.1 ↗ | alpha complex topology › Cas1 › Cas1 › Cas1 › Cas_Cas1 | 0.94 | 90.0 | 5.77e-01 | 100.0% | 26.0% |
| 147026 | 3239.1.1.1 ↗ | alpha complex topology › Cas1 › Cas1 › Cas1 › Cas_Cas1 | 0.93 | 89.0 | 5.62e-01 | 100.0% | 28.4% |
| 4889370 | 3239.1.1.0 ↗ | alpha complex topology › Cas1 › Cas1 › Cas1 | 0.89 | 76.0 | 5.88e-01 | 94.9% | 44.6% |
| 4857416 | 3239.1.1.1 ↗ | alpha complex topology › Cas1 › Cas1 › Cas1 › Cas_Cas1 | 0.89 | 85.0 | 5.48e-01 | 100.0% | 28.1% |
| 4392322 | 3239.1.1.1 ↗ | alpha complex topology › Cas1 › Cas1 › Cas1 › Cas_Cas1 | 0.88 | 77.0 | 4.99e-01 | 92.3% | 24.3% |
| 4096065 | 3239.1.1.1 ↗ | alpha complex topology › Cas1 › Cas1 › Cas1 › Cas_Cas1 | 0.88 | 80.0 | 5.08e-01 | 96.2% | 24.0% |
| 4928071 | 3239.1.1.1 ↗ | alpha complex topology › Cas1 › Cas1 › Cas1 › Cas_Cas1 | 0.88 | 78.0 | 5.04e-01 | 94.9% | 23.9% |
| 4524600 | 3239.1.1.1 ↗ | alpha complex topology › Cas1 › Cas1 › Cas1 › Cas_Cas1 | 0.87 | 81.0 | 5.15e-01 | 98.7% | 23.3% |
| 5037669 | 3239.1.1.1 ↗ | alpha complex topology › Cas1 › Cas1 › Cas1 › Cas_Cas1 | 0.87 | 78.0 | 5.05e-01 | 97.4% | 23.8% |
| 4438458 | 3239.1.1.1 ↗ | alpha complex topology › Cas1 › Cas1 › Cas1 › Cas_Cas1 | 0.87 | 78.0 | 4.94e-01 | 96.2% | 26.0% |
| 5022743 | 3239.1.1.1 ↗ | alpha complex topology › Cas1 › Cas1 › Cas1 › Cas_Cas1 | 0.87 | 72.0 | 4.62e-01 | 96.2% | 20.9% |
| 4996324 | 3239.1.1.1 ↗ | alpha complex topology › Cas1 › Cas1 › Cas1 › Cas_Cas1 | 0.86 | 77.0 | 4.89e-01 | 94.9% | 22.1% |
| 4486492 | 3239.1.1.1 ↗ | alpha complex topology › Cas1 › Cas1 › Cas1 › Cas_Cas1 | 0.86 | 79.0 | 5.02e-01 | 97.4% | 23.3% |
| 4949685 | 3239.1.1.1 ↗ | alpha complex topology › Cas1 › Cas1 › Cas1 › Cas_Cas1 | 0.86 | 78.0 | 5.03e-01 | 96.2% | 24.5% |
| 5004081 | 3239.1.1.1 ↗ | alpha complex topology › Cas1 › Cas1 › Cas1 › Cas_Cas1 | 0.86 | 77.0 | 4.91e-01 | 94.9% | 23.1% |
| 4405603 | 3239.1.1.1 ↗ | alpha complex topology › Cas1 › Cas1 › Cas1 › Cas_Cas1 | 0.86 | 80.0 | 5.19e-01 | 100.0% | 26.1% |
| 4498918 | 3239.1.1.1 ↗ | alpha complex topology › Cas1 › Cas1 › Cas1 › Cas_Cas1 | 0.86 | 78.0 | 4.96e-01 | 97.4% | 22.5% |
| 4041865 | 3239.1.1.1 ↗ | alpha complex topology › Cas1 › Cas1 › Cas1 › Cas_Cas1 | 0.86 | 77.0 | 4.89e-01 | 96.2% | 22.4% |
| 4928788 | 3239.1.1.1 ↗ | alpha complex topology › Cas1 › Cas1 › Cas1 › Cas_Cas1 | 0.86 | 77.0 | 4.93e-01 | 96.2% | 22.9% |
| 4346702 | 3239.1.1.1 ↗ | alpha complex topology › Cas1 › Cas1 › Cas1 › Cas_Cas1 | 0.86 | 79.0 | 5.05e-01 | 98.7% | 24.5% |
| 3385541 | 3239.1.1.1 ↗ | alpha complex topology › Cas1 › Cas1 › Cas1 › Cas_Cas1 | 0.86 | 78.0 | 5.12e-01 | 100.0% | 26.2% |
| 4569627 | 3239.1.1.1 ↗ | alpha complex topology › Cas1 › Cas1 › Cas1 › Cas_Cas1 | 0.85 | 72.0 | 4.72e-01 | 89.7% | 23.5% |
| 2728118 | 3239.1.1.1 ↗ | alpha complex topology › Cas1 › Cas1 › Cas1 › Cas_Cas1 | 0.85 | 75.0 | 4.84e-01 | 94.9% | 24.5% |
| 4046811 | 3239.1.1.1 ↗ | alpha complex topology › Cas1 › Cas1 › Cas1 › Cas_Cas1 | 0.85 | 76.0 | 4.93e-01 | 96.2% | 24.3% |
| 5009925 | 3239.1.1.1 ↗ | alpha complex topology › Cas1 › Cas1 › Cas1 › Cas_Cas1 | 0.85 | 75.0 | 4.84e-01 | 96.2% | 23.9% |
| 1140434 | 3239.1.1.1 ↗ | alpha complex topology › Cas1 › Cas1 › Cas1 › Cas_Cas1 | 0.85 | 78.0 | 4.93e-01 | 100.0% | 22.2% |
| 1041203 | 3239.1.1.1 ↗ | alpha complex topology › Cas1 › Cas1 › Cas1 › Cas_Cas1 | 0.85 | 74.0 | 4.84e-01 | 96.2% | 23.8% |
| 4495021 | 3239.1.1.1 ↗ | alpha complex topology › Cas1 › Cas1 › Cas1 › Cas_Cas1 | 0.85 | 79.0 | 4.96e-01 | 100.0% | 23.7% |
| 4542362 | 3239.1.1.1 ↗ | alpha complex topology › Cas1 › Cas1 › Cas1 › Cas_Cas1 | 0.85 | 75.0 | 4.78e-01 | 94.9% | 22.5% |
| 4649506 | 3239.1.1.1 ↗ | alpha complex topology › Cas1 › Cas1 › Cas1 › Cas_Cas1 | 0.84 | 75.0 | 4.88e-01 | 96.2% | 24.1% |
| 4971724 | 3239.1.1.1 ↗ | alpha complex topology › Cas1 › Cas1 › Cas1 › Cas_Cas1 | 0.84 | 76.0 | 4.80e-01 | 96.2% | 21.7% |
| 4088587 | 3239.1.1.1 ↗ | alpha complex topology › Cas1 › Cas1 › Cas1 › Cas_Cas1 | 0.84 | 78.0 | 5.09e-01 | 100.0% | 25.9% |
| 4650684 | 3239.1.1.1 ↗ | alpha complex topology › Cas1 › Cas1 › Cas1 › Cas_Cas1 | 0.84 | 75.0 | 4.82e-01 | 96.2% | 23.6% |
| 4108899 | 3239.1.1.1 ↗ | alpha complex topology › Cas1 › Cas1 › Cas1 › Cas_Cas1 | 0.84 | 75.0 | 4.80e-01 | 96.2% | 22.5% |
| 4661121 | 3239.1.1.1 ↗ | alpha complex topology › Cas1 › Cas1 › Cas1 › Cas_Cas1 | 0.84 | 74.0 | 4.83e-01 | 94.9% | 25.0% |
| 2124247 | 3239.1.1.1 ↗ | alpha complex topology › Cas1 › Cas1 › Cas1 › Cas_Cas1 | 0.83 | 76.0 | 6.21e-01 | 100.0% | 55.8% |
| 1723569 | 3239.1.1.1 ↗ | alpha complex topology › Cas1 › Cas1 › Cas1 › Cas_Cas1 | 0.83 | 76.0 | 4.99e-01 | 97.4% | 26.7% |
| 4666911 | 3239.1.1.1 ↗ | alpha complex topology › Cas1 › Cas1 › Cas1 › Cas_Cas1 | 0.83 | 73.0 | 4.73e-01 | 96.2% | 23.1% |
| 2798015 | 3239.1.1.1 ↗ | alpha complex topology › Cas1 › Cas1 › Cas1 › Cas_Cas1 | 0.83 | 76.0 | 4.81e-01 | 100.0% | 21.8% |
| 4947563 | 3239.1.1.1 ↗ | alpha complex topology › Cas1 › Cas1 › Cas1 › Cas_Cas1 | 0.82 | 72.0 | 4.63e-01 | 94.9% | 22.7% |
| 5083087 | 3239.1.1.1 ↗ | alpha complex topology › Cas1 › Cas1 › Cas1 › Cas_Cas1 | 0.82 | 72.0 | 4.58e-01 | 94.9% | 27.0% |
| 2985803 | 3239.1.1.1 ↗ | alpha complex topology › Cas1 › Cas1 › Cas1 › Cas_Cas1 | 0.81 | 74.0 | 4.73e-01 | 100.0% | 22.8% |
| 2816212 | 3239.1.1.1 ↗ | alpha complex topology › Cas1 › Cas1 › Cas1 › Cas_Cas1 | 0.80 | 73.0 | 4.72e-01 | 100.0% | 23.2% |
| 5077504 | 3239.1.1.1 ↗ | alpha complex topology › Cas1 › Cas1 › Cas1 › Cas_Cas1 | 0.80 | 69.0 | 4.52e-01 | 96.2% | 23.8% |
| 3333727 | 2008.3.1.1 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Eukaryotic RPB5 N-terminal domain › Eukaryotic RPB5 N-terminal domain › RNA_pol_Rpb5_N | 0.67 | 54.0 | 4.78e-01 | 93.6% | 61.8% |
| 5044420 | 2493.1.1.4 ↗ | a/b three-layered sandwiches › MurF and HprK N-domain-like › MurF and HprK N-domain-like › MurF and HprK N-domain-like › DRTGG | 0.64 | 54.0 | 4.61e-01 | 92.3% | 68.0% |
| 4105434 | 2492.1.1.7 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › FdhD-NarQ | 0.64 | 58.0 | 4.57e-01 | 100.0% | 83.8% |
| 5065878 | 2492.1.1.7 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › FdhD-NarQ | 0.63 | 57.0 | 4.60e-01 | 100.0% | 86.6% |
| 4385485 | 2008.1.1.82 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › RRG7 | 0.63 | 57.0 | 4.27e-01 | 100.0% | 48.9% |
| 3265472 | 7542.1.1.0 ↗ | a/b three-layered sandwiches › Aconitase iron-sulfur domain › Aconitase iron-sulfur domain › Aconitase iron-sulfur domain | 0.63 | 54.0 | 4.03e-01 | 93.6% | 77.4% |
| 4963007 | 2008.1.1.16 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Mrr_cat | 0.63 | 53.0 | 4.17e-01 | 96.2% | 45.8% |
| 3743329 | 2008.1.1.82 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › RRG7 | 0.63 | 55.0 | 4.20e-01 | 100.0% | 42.2% |
| 5003530 | 2492.1.1.7 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › FdhD-NarQ | 0.62 | 56.0 | 4.63e-01 | 100.0% | 92.9% |
| 5003527 | 2492.1.1.7 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › FdhD-NarQ | 0.62 | 55.0 | 4.45e-01 | 100.0% | 84.7% |
| 4275419 | 2004.1.1.91 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › LpxK | 0.61 | 53.0 | 3.74e-01 | 97.4% | 31.2% |
| 4267211 | 2004.1.1.91 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › LpxK | 0.61 | 53.0 | 3.77e-01 | 97.4% | 32.5% |
| 5005103 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.61 | 46.0 | 4.16e-01 | 94.9% | 58.2% |
| 4989863 | 2492.1.1.7 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › FdhD-NarQ | 0.61 | 55.0 | 4.51e-01 | 100.0% | 88.6% |
| 4999525 | 2008.1.1.16 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Mrr_cat | 0.61 | 54.0 | 4.13e-01 | 97.4% | 59.8% |
| 4058772 | 2008.1.1.82 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › RRG7 | 0.61 | 54.0 | 3.90e-01 | 100.0% | 40.9% |
| 3207085 | 2008.1.1.82 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › RRG7 | 0.60 | 54.0 | 4.00e-01 | 100.0% | 39.0% |
| 3986047 | 2003.1.1.3 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › adh_short | 0.60 | 52.0 | 3.64e-01 | 97.4% | 30.8% |
| 4934112 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.60 | 53.0 | 4.49e-01 | 98.7% | 63.1% |
| 3956485 | 2008.1.1.16 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Mrr_cat | 0.60 | 51.0 | 4.01e-01 | 96.2% | 45.6% |
| 3579392 | 323.1.1.3 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding | 0.59 | 52.0 | 3.76e-01 | 100.0% | 74.7% |
| 3287148 | 207.6.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Serralysin-like metalloprotease-C › Serralysin-like metalloprotease-C › HemolysinCabind | 0.59 | 51.0 | 3.66e-01 | 97.4% | 50.6% |
| 3939490 | 323.1.1.3 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding | 0.59 | 51.0 | 3.49e-01 | 100.0% | 50.2% |
| 3274283 | 2008.1.1.82 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › RRG7 | 0.59 | 53.0 | 4.15e-01 | 100.0% | 55.0% |
| None | — | 0.59 | 51.0 | 3.55e-01 | 97.4% | 29.4% | |
| 4147126 | 7514.1.1.1 ↗ | a/b three-layered sandwiches › Ferredoxin reductase-like, C-terminal NADP-linked domain › Ferredoxin reductase-like, C-terminal NADP-linked domain › Ferredoxin reductase-like, C-terminal NADP-linked domain › NAD_binding_1 | 0.58 | 50.0 | 4.26e-01 | 94.9% | 94.4% |
| 3786997 | 207.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats | 0.57 | 50.0 | 3.39e-01 | 98.7% | 26.2% |
| 5078418 | 7584.1.1.0 ↗ | a/b three-layered sandwiches › Rossmann-like domain in Acetyl-CoA synthetase-like proteins › Rossmann-like domain in Acetyl-CoA synthetase-like proteins › Rossmann-like domain in Acetyl-CoA synthetase-like proteins | 0.57 | 50.0 | 3.45e-01 | 98.7% | 54.2% |
| 5081823 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.57 | 49.0 | 4.12e-01 | 100.0% | 55.6% |
| 5071081 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.57 | 48.0 | 3.86e-01 | 93.6% | 67.1% |
| 1203505 | 323.1.1.3 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding | 0.57 | 49.0 | 3.60e-01 | 98.7% | 56.5% |
| 4983658 | 2008.1.1.16 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Mrr_cat | 0.56 | 49.0 | 4.00e-01 | 96.2% | 59.3% |
| 3225341 | 207.1.1.81 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH | 0.56 | 49.0 | 3.43e-01 | 96.2% | 57.6% |
| 10918 | 323.1.1.3 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding | 0.56 | 49.0 | 3.88e-01 | 100.0% | 68.3% |
| 5009295 | 7516.1.1.1 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › NTP_transferase | 0.56 | 48.0 | 3.53e-01 | 97.4% | 42.8% |
| 2484454 | 2003.4.1.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Tryptophan synthase beta subunit-like PLP-dependent enzymes › Tryptophan synthase beta subunit-like PLP-dependent enzymes › PALP | 0.55 | 46.0 | 3.64e-01 | 93.6% | 45.5% |
| 3714866 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.55 | 50.0 | 3.90e-01 | 100.0% | 55.2% |
| 3423030 | 207.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats | 0.55 | 47.0 | 3.68e-01 | 97.4% | 63.8% |
| 3289549 | 2003.4.1.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Tryptophan synthase beta subunit-like PLP-dependent enzymes › Tryptophan synthase beta subunit-like PLP-dependent enzymes › PALP | 0.55 | 47.0 | 3.67e-01 | 93.6% | 45.6% |
| 3057294 | 207.1.1.162 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › PF29594 | 0.54 | 47.0 | 3.21e-01 | 97.4% | 41.9% |
| 4393585 | 7514.1.1.3 ↗ | a/b three-layered sandwiches › Ferredoxin reductase-like, C-terminal NADP-linked domain › Ferredoxin reductase-like, C-terminal NADP-linked domain › Ferredoxin reductase-like, C-terminal NADP-linked domain › NAD_binding_6 | 0.54 | 41.0 | 3.34e-01 | 84.6% | 89.4% |
| 3209687 | 2003.4.1.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Tryptophan synthase beta subunit-like PLP-dependent enzymes › Tryptophan synthase beta subunit-like PLP-dependent enzymes › PALP | 0.53 | 46.0 | 3.54e-01 | 94.9% | 44.1% |
| 3924841 | 207.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats | 0.53 | 45.0 | 3.24e-01 | 97.4% | 55.9% |
| 3612383 | 2484.1.1.18 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1 | 0.53 | 45.0 | 2.96e-01 | 98.7% | 47.5% |
| 4193922 | 2002.1.1.81 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › ThiC_Rad_SAM | 0.51 | 44.0 | 2.80e-01 | 100.0% | 35.5% |
| 4547659 | 2007.1.16.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Iron-sulphur enzyme Dph2 | 0.50 | 43.0 | 3.71e-01 | 98.7% | 84.6% |
D2
high
residues 94-270
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01867.22 best | Cas_Cas1 | 36.4 | 4.70e-09 | 91.0% | 44.2% |
CATH (15)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3nkeA00 | 1.20.120.920 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CRISPR-associated endonuclease Cas1, C-terminal domain | 0.94 | 89.0 | 8.85e-01 | 100.0% | 94.0% |
| 3godB02 | 1.20.120.920 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CRISPR-associated endonuclease Cas1, C-terminal domain | 0.89 | 86.0 | 8.07e-01 | 100.0% | 98.1% |
| 6opmD01 | 1.20.120.920 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CRISPR-associated endonuclease Cas1, C-terminal domain | 0.87 | 82.0 | 7.29e-01 | 98.3% | 96.2% |
| 4w8kA02 | 1.20.120.920 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CRISPR-associated endonuclease Cas1, C-terminal domain | 0.87 | 83.0 | 7.99e-01 | 100.0% | 98.5% |
| 7cr6D02 | 1.20.120.920 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CRISPR-associated endonuclease Cas1, C-terminal domain | 0.86 | 82.0 | 7.50e-01 | 100.0% | 98.2% |
| 2yzsA02 | 1.20.120.920 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CRISPR-associated endonuclease Cas1, C-terminal domain | 0.84 | 80.0 | 7.26e-01 | 100.0% | 92.5% |
| 7kfuC02 | 1.20.120.920 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CRISPR-associated endonuclease Cas1, C-terminal domain | 0.84 | 80.0 | 7.16e-01 | 100.0% | 98.3% |
| 2pv4A00 | 1.10.3440.10 | Mainly Alpha › Orthogonal Bundle › Sama2622-like fold › Sama2622-like | 0.60 | 38.0 | 4.20e-01 | 76.8% | 77.2% |
| 1v66A00 | 1.10.720.30 | Mainly Alpha › Orthogonal Bundle › Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 › SAP domain | 0.59 | 19.0 | 3.15e-01 | 87.6% | 76.9% |
| 3gi7A00 | 1.20.1270.180 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.57 | 34.0 | 4.21e-01 | 77.4% | 99.0% |
| 1u7gA00 | 1.10.3430.10 | Mainly Alpha › Orthogonal Bundle › Ammonium transporter fold › Ammonium transporter AmtB like domains | 0.55 | 49.0 | 3.85e-01 | 97.7% | 57.4% |
| 2b2hA00 | 1.10.3430.10 | Mainly Alpha › Orthogonal Bundle › Ammonium transporter fold › Ammonium transporter AmtB like domains | 0.54 | 45.0 | 3.53e-01 | 91.0% | 53.7% |
| 2l6aA00 | 1.10.533.10 | Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas | 0.54 | 23.0 | 2.94e-01 | 99.4% | 63.7% |
| 1v4eA00 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.51 | 40.0 | 3.45e-01 | 91.0% | 52.1% |
| 7dswA01 | 1.20.1530.20 | Mainly Alpha › Up-down Bundle › Na+/H+ antiporter like fold › | 0.50 | 41.0 | 3.15e-01 | 85.9% | 87.7% |
ECOD (14)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1712635 | 3239.1.1.1 ↗ | alpha complex topology › Cas1 › Cas1 › Cas1 › Cas_Cas1 | 0.95 | 90.0 | 7.28e-01 | 100.0% | 57.3% |
| 3982882 | 3239.1.1.1 ↗ | alpha complex topology › Cas1 › Cas1 › Cas1 › Cas_Cas1 | 0.95 | 92.0 | 8.76e-01 | 100.0% | 88.4% |
| 4560474 | 3239.1.1.1 ↗ | alpha complex topology › Cas1 › Cas1 › Cas1 › Cas_Cas1 | 0.95 | 92.0 | 7.79e-01 | 100.0% | 66.8% |
| 3031029 | 3239.1.1.1 ↗ | alpha complex topology › Cas1 › Cas1 › Cas1 › Cas_Cas1 | 0.94 | 91.0 | 7.33e-01 | 100.0% | 58.4% |
| 147026 | 3239.1.1.1 ↗ | alpha complex topology › Cas1 › Cas1 › Cas1 › Cas_Cas1 | 0.89 | 86.0 | 6.82e-01 | 100.0% | 64.1% |
| 4933934 | 3239.1.1.1 ↗ | alpha complex topology › Cas1 › Cas1 › Cas1 › Cas_Cas1 | 0.87 | 84.0 | 6.63e-01 | 100.0% | 70.5% |
| 4857416 | 3239.1.1.1 ↗ | alpha complex topology › Cas1 › Cas1 › Cas1 › Cas_Cas1 | 0.86 | 83.0 | 6.79e-01 | 100.0% | 66.1% |
| 4650684 | 3239.1.1.1 ↗ | alpha complex topology › Cas1 › Cas1 › Cas1 › Cas_Cas1 | 0.85 | 81.0 | 6.42e-01 | 100.0% | 66.7% |
| 4088587 | 3239.1.1.1 ↗ | alpha complex topology › Cas1 › Cas1 › Cas1 › Cas_Cas1 | 0.84 | 80.0 | 6.51e-01 | 100.0% | 66.2% |
| 4666911 | 3239.1.1.1 ↗ | alpha complex topology › Cas1 › Cas1 › Cas1 › Cas_Cas1 | 0.83 | 79.0 | 6.31e-01 | 100.0% | 69.4% |
| 4405603 | 3239.1.1.1 ↗ | alpha complex topology › Cas1 › Cas1 › Cas1 › Cas_Cas1 | 0.79 | 76.0 | 6.22e-01 | 100.0% | 65.8% |
| 4982694 | 3843.1.1.35 ↗ | alpha complex topology › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › DUF1634 | 0.52 | 22.0 | 2.83e-01 | 90.4% | 64.3% |
| 4036392 | 140.1.1.11 ↗ | alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › DALR_1 | 0.51 | 30.0 | 3.60e-01 | 78.0% | 90.0% |
| 3710230 | 601.1.2.0 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › I/LWEQ domain (Pfam 01608) | 0.50 | 33.0 | 3.57e-01 | 80.8% | 77.3% |