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SRR1747018_scaffold_15_prodigal-single.1__X__X__00058

Bact-Vir

SRR1747018_scaffold_15_prodigal-single.1__X__X__00058

Identity

Kingdom:
phage

Quality

88.2 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 284-429
PDB
ECOD (11)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3990129 4333.1.1.0 a+b complex topology › DNA methylase specificity domain › DNA methylase specificity domain › DNA methylase specificity domain 0.76 69.0 5.98e-01 95.2% 97.1%
5045467 4333.1.1.2 a+b complex topology › DNA methylase specificity domain › DNA methylase specificity domain › DNA methylase specificity domain › TaqI_C 0.71 66.0 5.56e-01 100.0% 91.7%
3385784 4333.1.1.0 a+b complex topology › DNA methylase specificity domain › DNA methylase specificity domain › DNA methylase specificity domain 0.71 66.0 5.15e-01 100.0% 91.9%
4959286 4333.1.1.2 a+b complex topology › DNA methylase specificity domain › DNA methylase specificity domain › DNA methylase specificity domain › TaqI_C 0.67 60.0 5.23e-01 93.8% 99.5%
5024595 4333.1.1.2 a+b complex topology › DNA methylase specificity domain › DNA methylase specificity domain › DNA methylase specificity domain › TaqI_C 0.67 62.0 4.73e-01 100.0% 93.4%
5053550 4333.1.1.0 a+b complex topology › DNA methylase specificity domain › DNA methylase specificity domain › DNA methylase specificity domain 0.66 62.0 5.11e-01 100.0% 98.0%
5051526 4333.1.1.0 a+b complex topology › DNA methylase specificity domain › DNA methylase specificity domain › DNA methylase specificity domain 0.66 55.0 4.39e-01 88.4% 99.3%
5002491 4333.1.1.0 a+b complex topology › DNA methylase specificity domain › DNA methylase specificity domain › DNA methylase specificity domain 0.64 56.0 4.72e-01 93.2% 100.0%
3839781 4333.1.1.2 a+b complex topology › DNA methylase specificity domain › DNA methylase specificity domain › DNA methylase specificity domain › TaqI_C 0.64 60.0 5.41e-01 100.0% 92.8%
4937813 4333.1.1.1 a+b complex topology › DNA methylase specificity domain › DNA methylase specificity domain › DNA methylase specificity domain › Methylase_S 0.61 52.0 3.74e-01 91.1% 97.8%
4969885 4333.1.1.1 a+b complex topology › DNA methylase specificity domain › DNA methylase specificity domain › DNA methylase specificity domain › Methylase_S 0.61 48.0 4.59e-01 82.9% 92.9%
D2 medium residues 21-191
PDB
CATH (74)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2p35A01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.83 55.0 5.52e-01 98.8% 66.1%
5o9fA02 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.81 53.0 5.90e-01 95.9% 81.8%
5bxyA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.81 55.0 5.83e-01 100.0% 76.6%
2h6eA02 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.80 54.0 5.94e-01 98.2% 82.5%
3g88A00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.78 55.0 4.82e-01 99.4% 51.0%
5c0oH00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.78 54.0 4.97e-01 100.0% 56.9%
3tmaA02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.77 57.0 5.67e-01 100.0% 72.9%
2gpyB00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.77 56.0 5.34e-01 100.0% 65.1%
3duwA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.77 56.0 5.11e-01 100.0% 58.0%
3ajdA02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.76 57.0 5.41e-01 97.7% 67.0%
4a27A02 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.76 47.0 4.97e-01 98.8% 67.9%
3gnlA01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.76 51.0 5.28e-01 98.2% 70.9%
3bkwB00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.75 52.0 4.75e-01 99.4% 54.6%
2o57A02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.75 54.0 5.53e-01 98.8% 75.8%
1dl5A01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.75 52.0 4.88e-01 100.0% 59.2%
4pcaB00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.75 55.0 5.02e-01 100.0% 58.7%
3axsA01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.75 57.0 4.48e-01 100.0% 41.3%
1ri5A00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.75 54.0 4.68e-01 99.4% 50.4%
1npyA02 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.75 48.0 4.91e-01 98.8% 65.7%
2dulA01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.74 58.0 4.64e-01 100.0% 44.5%
3dliA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.74 52.0 4.72e-01 100.0% 55.2%
3a7eA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.74 55.0 5.11e-01 100.0% 61.8%
5fcdA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.74 53.0 4.81e-01 100.0% 55.3%
2hnkA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.74 58.0 5.23e-01 100.0% 60.7%
2avdA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.73 54.0 4.94e-01 100.0% 58.4%
1suiA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.73 53.0 4.83e-01 100.0% 56.8%
3jwhA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.72 53.0 5.07e-01 98.8% 66.5%
5dlyA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.72 54.0 4.56e-01 100.0% 49.2%
1sqgA04 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.71 58.0 5.46e-01 98.2% 72.2%
1f3lA01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.71 53.0 5.82e-01 99.4% 92.3%
2vsqA04 3.40.50.980 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.70 40.0 4.46e-01 98.2% 69.9%
3bkxA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.69 52.0 4.43e-01 99.4% 49.5%
5i7wA02 3.40.50.1100 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.67 43.0 5.19e-01 98.8% 96.5%
3uwpA02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.65 52.0 4.78e-01 100.0% 65.0%
4zeoH02 3.40.50.10470 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Translation initiation factor eif-2b; domain 2 0.65 46.0 4.77e-01 98.8% 77.5%
5d84A02 3.40.50.1100 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.65 41.0 4.97e-01 97.7% 98.2%
3g5tA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.64 53.0 4.33e-01 100.0% 49.5%
1amuA01 3.40.50.980 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.64 39.0 4.02e-01 100.0% 63.0%
1vb3A03 3.40.50.1100 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.63 41.0 4.43e-01 85.4% 76.0%
8oqkA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.63 35.0 4.36e-01 86.5% 88.3%
2yvqA00 3.40.50.1380 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Methylglyoxal synthase-like domain 0.63 40.0 4.43e-01 90.1% 79.9%
3h6gA02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.62 39.0 4.00e-01 98.8% 64.3%
1yt8A03 3.40.250.10 Alpha Beta › 3-Layer(aba) Sandwich › Oxidized Rhodanese; domain 1 › Rhodanese-like domain 0.61 33.0 4.20e-01 96.5% 94.5%
3cw9A01 3.40.50.980 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.61 39.0 3.88e-01 100.0% 62.1%
1i4wA01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.60 57.0 4.95e-01 100.0% 90.7%
1hdcA00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.60 46.0 4.03e-01 91.2% 53.8%
1hnnA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.58 54.0 4.66e-01 100.0% 69.0%
2dplA01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.57 44.0 4.54e-01 97.7% 84.8%
3q9cA00 3.40.800.20 Alpha Beta › 3-Layer(aba) Sandwich › Arginase; Chain A › Histone deacetylase domain 0.56 50.0 4.02e-01 97.1% 92.1%
1edzA02 3.40.50.10860 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Leucine Dehydrogenase, chain A, domain 1 0.56 38.0 4.27e-01 96.5% 88.5%
1xngA01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.56 47.0 4.21e-01 97.7% 62.8%
6yttA02 3.40.50.2030 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.56 41.0 4.18e-01 88.9% 76.5%
2h3hB02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.56 42.0 4.35e-01 100.0% 83.4%
1nvtA02 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.55 44.0 4.73e-01 95.9% 100.0%
6khnA01 3.40.640.10 Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) 0.55 46.0 3.92e-01 98.8% 55.1%
3cgbA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.55 38.0 3.91e-01 86.5% 72.0%
4eqsA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.55 39.0 3.94e-01 87.1% 72.4%
1xtpA01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.54 48.0 4.54e-01 100.0% 85.0%
3a9uA02 3.40.50.980 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.54 35.0 3.70e-01 98.8% 74.1%
2jisB02 3.40.640.10 Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) 0.54 44.0 3.89e-01 98.8% 60.1%
4ritA02 3.40.640.10 Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) 0.53 44.0 3.94e-01 98.8% 63.1%
3c85A00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.53 37.0 3.88e-01 87.1% 80.0%
5hsgA02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.52 40.0 4.12e-01 100.0% 85.0%
5h02A02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.52 47.0 4.67e-01 100.0% 96.1%
1a5aB02 3.40.50.1100 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.52 43.0 4.00e-01 88.9% 82.6%
3i5xA02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.52 42.0 3.71e-01 87.1% 62.7%
3iupA02 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.52 44.0 4.33e-01 97.7% 84.6%
3ppiC00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.52 43.0 3.87e-01 90.6% 77.1%
5je6A01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.52 46.0 4.20e-01 98.2% 96.1%
4yhsA01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.52 37.0 4.21e-01 98.8% 100.0%
3vayA01 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.51 38.0 4.08e-01 89.5% 91.6%
3ntvA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.51 45.0 4.29e-01 100.0% 82.9%
4fsdA01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.50 45.0 4.05e-01 97.1% 89.8%
5cvcB01 3.40.50.1100 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.50 42.0 3.86e-01 90.1% 90.2%
ECOD (86)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4546233 2003.1.5.165 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_11, Methyltransf_23 0.80 56.0 4.84e-01 100.0% 48.8%
4224290 2003.1.5.97 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_32 0.79 54.0 4.37e-01 99.4% 39.7%
4558041 2003.1.5.67 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_12 0.79 55.0 4.71e-01 100.0% 47.5%
4182699 2003.1.5.81 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 0.78 55.0 4.75e-01 100.0% 48.8%
2389407 2003.1.5.14 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_3 0.78 56.0 5.22e-01 100.0% 60.4%
None 0.77 55.0 5.82e-01 100.0% 80.1%
3279792 2003.1.5.14 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_3 0.77 56.0 5.14e-01 100.0% 59.1%
4269760 2003.1.5.22 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › N6_Mtase 0.77 64.0 5.08e-01 100.0% 47.4%
5039054 2003.1.5.66 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_11 0.77 56.0 5.50e-01 100.0% 69.2%
None 0.76 56.0 5.15e-01 99.4% 60.1%
None 0.76 55.0 5.01e-01 100.0% 57.5%
4121483 2003.1.5.53 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › tRNA_U5-meth_tr 0.76 54.0 4.32e-01 100.0% 39.7%
4340545 2003.1.5.53 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › tRNA_U5-meth_tr 0.76 58.0 4.42e-01 100.0% 37.5%
3839822 2003.1.5.160 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › N6_Mtase, Eco57I 0.76 63.0 5.28e-01 100.0% 55.8%
3959518 2003.1.5.14 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_3 0.75 57.0 5.49e-01 100.0% 68.7%
5077466 2003.1.5.66 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_11 0.75 56.0 5.38e-01 100.0% 68.4%
3283850 2003.1.5.81 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 0.74 57.0 4.99e-01 100.0% 55.8%
4984478 2003.1.5.82 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_31 0.74 54.0 4.83e-01 100.0% 56.0%
3791403 2003.1.5.66 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_11 0.74 54.0 6.08e-01 100.0% 95.6%
3623656 2003.1.5.4 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › PCMT 0.74 54.0 6.07e-01 100.0% 95.6%
3698449 2003.1.5.79 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_23 0.73 57.0 4.77e-01 100.0% 49.3%
5071434 2003.1.5.82 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_31 0.73 55.0 4.98e-01 100.0% 59.5%
None 0.73 55.0 4.65e-01 100.0% 48.5%
3981243 2003.1.5.82 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_31 0.73 52.0 4.64e-01 100.0% 54.1%
4682812 2003.1.5.81 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 0.73 55.0 4.73e-01 100.0% 52.2%
136755 2003.1.5.79 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_23 0.72 53.0 5.09e-01 98.8% 67.2%
4999505 2003.1.5.81 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 0.72 56.0 4.95e-01 100.0% 57.4%
5073415 2003.1.5.82 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_31 0.72 54.0 5.00e-01 100.0% 61.4%
4136390 2003.1.5.66 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_11 0.72 55.0 4.70e-01 100.0% 51.5%
5065452 2003.1.5.66 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_11 0.72 54.0 4.83e-01 100.0% 57.4%
4960913 2003.1.5.81 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 0.71 53.0 4.82e-01 100.0% 59.1%
5072990 2003.1.5.82 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_31 0.71 54.0 4.95e-01 100.0% 61.4%
None 0.70 61.0 4.81e-01 100.0% 48.6%
3256334 2003.1.5.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases 0.70 54.0 4.32e-01 100.0% 43.1%
5076379 2003.1.5.66 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_11 0.70 53.0 4.45e-01 98.8% 49.3%
5076899 2003.1.5.66 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_11 0.69 54.0 5.39e-01 100.0% 78.9%
3725448 2003.1.5.81 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 0.69 57.0 4.78e-01 100.0% 52.9%
5074845 2003.1.5.66 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_11 0.68 54.0 4.90e-01 100.0% 63.6%
3181759 2003.1.5.233 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › PF27593 0.68 56.0 4.63e-01 100.0% 51.0%
4371840 2003.1.5.46 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › MTS 0.68 57.0 5.00e-01 100.0% 62.1%
5048441 2003.1.5.82 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_31 0.67 54.0 5.01e-01 100.0% 66.5%
None 0.67 54.0 4.58e-01 100.0% 53.4%
4194424 2003.1.5.46 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › MTS 0.67 57.0 4.89e-01 100.0% 58.9%
4105277 2003.1.5.82 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_31 0.67 57.0 5.35e-01 100.0% 75.0%
3838126 2003.1.5.46 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › MTS 0.67 55.0 5.27e-01 100.0% 74.9%
3279774 2003.1.5.165 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_11, Methyltransf_23 0.67 53.0 4.27e-01 100.0% 44.8%
3394063 2003.1.5.46 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › MTS 0.66 59.0 5.39e-01 100.0% 74.6%
3266091 2003.1.5.82 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_31 0.66 62.0 5.51e-01 100.0% 78.3%
4029899 2003.1.5.6 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltr_RsmB-F 0.65 61.0 4.73e-01 98.2% 56.5%
3599844 2003.1.1.36 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › 3HCDH_N 0.65 47.0 4.23e-01 90.6% 55.6%
3657404 2003.1.5.201 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25, Methyltransf_31 0.65 56.0 5.55e-01 100.0% 86.9%
3955236 2003.1.5.81 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 0.65 53.0 4.52e-01 100.0% 54.1%
4077445 2003.1.5.32 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Cons_hypoth95 0.64 59.0 5.38e-01 100.0% 76.6%
4651438 2003.1.5.46 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › MTS 0.63 54.0 5.04e-01 100.0% 74.1%
4525127 2003.1.5.35 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › LCM 0.63 58.0 4.48e-01 100.0% 60.0%
3210195 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.62 58.0 3.47e-01 100.0% 18.7%
4965332 2003.1.7.1 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NagB/RpiA/CoA transferase-like › DeoRC 0.61 47.0 4.61e-01 100.0% 73.5%
3983551 375.1.1.54 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Thr_synth_N 0.61 43.0 3.95e-01 100.0% 55.0%
4941014 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.61 50.0 4.84e-01 97.7% 77.2%
3738256 2003.1.5.35 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › LCM 0.61 57.0 4.63e-01 100.0% 63.6%
4033814 323.1.1.3 a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding 0.61 37.0 3.67e-01 100.0% 55.7%
3605001 2003.1.5.17 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_5 0.60 56.0 4.83e-01 99.4% 66.2%
5007311 7541.1.1.1 a/b three-layered sandwiches › Molybdenum cofactor biosynthesis proteins › Molybdenum cofactor biosynthesis proteins › Molybdenum cofactor biosynthesis proteins › MoCF_biosynth 0.58 41.0 4.12e-01 97.1% 70.6%
3230630 2003.1.5.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases 0.58 54.0 4.42e-01 100.0% 58.9%
5062418 2003.1.5.13 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Spermine_synth 0.58 54.0 4.88e-01 100.0% 76.5%
3955589 2003.1.5.35 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › LCM 0.57 54.0 4.59e-01 100.0% 65.3%
3790328 2003.1.5.13 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Spermine_synth 0.57 53.0 4.42e-01 100.0% 62.5%
2697493 7586.1.1.0 a/b three-layered sandwiches › Rossmann-like domain in prismane-like proteins › Rossmann-like domain in prismane-like proteins › Rossmann-like domain in prismane-like proteins 0.56 41.0 3.97e-01 88.9% 67.0%
4049858 327.3.1.0 a+b two layers › Alpha-lytic protease prodomain-like › GMP synthetase C-terminal dimerisation domain › GMP synthetase C-terminal dimerisation domain 0.56 48.0 4.12e-01 98.8% 57.5%
5049735 2003.1.5.82 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_31 0.55 50.0 3.97e-01 99.4% 56.4%
3290196 2003.1.5.81 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 0.55 49.0 4.65e-01 98.8% 94.8%
1891445 2003.1.5.67 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_12 0.55 50.0 4.28e-01 99.4% 80.5%
4948220 2005.1.1.14 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › PAPS_reduct 0.55 49.0 4.42e-01 98.2% 70.4%
4657002 2003.1.5.152 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › CMAS, Methyltransf_25 0.54 49.0 4.10e-01 99.4% 93.7%
4958454 2003.1.5.81 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 0.54 49.0 4.68e-01 100.0% 85.5%
3251717 2003.1.5.151 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_23, Methyltransf_25 0.54 49.0 4.20e-01 100.0% 81.7%
3834238 2003.1.5.14 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_3 0.54 50.0 4.18e-01 100.0% 61.0%
3960693 2003.1.5.81 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 0.54 49.0 4.62e-01 100.0% 95.1%
3519820 2003.1.5.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases 0.54 49.0 3.28e-01 100.0% 30.0%
5003842 2003.1.5.66 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_11 0.52 45.0 4.52e-01 99.4% 89.9%
5069140 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.52 44.0 4.41e-01 92.4% 89.4%
4941951 2003.1.5.82 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_31 0.51 47.0 4.69e-01 100.0% 98.3%
3386301 2003.1.1.48 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › YjeF_N 0.51 42.0 4.03e-01 100.0% 75.5%
3955321 323.1.1.3 a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding 0.51 38.0 3.67e-01 100.0% 67.2%
3718471 2003.1.1.5 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › ADH_zinc_N 0.51 41.0 3.93e-01 99.4% 73.8%
143785 2003.1.5.14 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_3 0.51 45.0 4.28e-01 100.0% 82.9%
D3 medium residues 192-278
PDB
Domain cluster: representative
CATH (5)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2okcA02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.74 67.0 4.54e-01 100.0% 40.5%
3s1sA02 3.40.50.12420 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.72 65.0 4.16e-01 100.0% 28.7%
1g38A01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.69 58.0 4.29e-01 95.4% 35.9%
5lvxC02 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.57 40.0 3.79e-01 73.6% 72.2%
1vpaA00 3.90.550.10 Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.52 36.0 2.75e-01 72.4% 81.4%
ECOD (45)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4418049 2003.1.5.62 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Eco57I 0.80 71.0 4.60e-01 95.4% 23.5%
None 0.77 71.0 4.87e-01 100.0% 41.8%
4950207 2003.1.5.22 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › N6_Mtase 0.76 70.0 4.61e-01 100.0% 37.4%
4100163 2003.1.5.62 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Eco57I 0.75 69.0 4.59e-01 100.0% 28.9%
5005190 2003.1.5.62 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Eco57I 0.75 68.0 4.42e-01 97.7% 26.1%
4941122 2003.1.5.62 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Eco57I 0.75 66.0 4.38e-01 96.6% 31.5%
2322907 2003.1.5.22 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › N6_Mtase 0.75 69.0 4.54e-01 100.0% 39.4%
5051401 2003.1.5.62 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Eco57I 0.74 66.0 4.44e-01 96.6% 29.8%
4997523 2003.1.5.62 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Eco57I 0.74 66.0 4.10e-01 95.4% 20.7%
4946359 2003.1.5.62 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Eco57I 0.74 66.0 4.45e-01 95.4% 30.7%
4969011 2003.1.5.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases 0.74 67.0 4.47e-01 100.0% 30.3%
5045466 2003.1.5.62 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Eco57I 0.73 64.0 4.01e-01 94.3% 21.6%
4959285 2003.1.5.62 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Eco57I 0.73 66.0 4.41e-01 100.0% 30.8%
3987620 2003.1.5.22 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › N6_Mtase 0.72 66.0 4.39e-01 100.0% 37.8%
5046165 2003.1.5.62 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Eco57I 0.72 63.0 4.04e-01 97.7% 21.0%
4948425 2003.1.5.22 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › N6_Mtase 0.72 60.0 4.66e-01 88.5% 50.3%
5053796 2003.1.5.22 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › N6_Mtase 0.72 66.0 4.40e-01 100.0% 43.8%
5012793 2003.1.5.62 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Eco57I 0.72 66.0 4.36e-01 100.0% 35.1%
4974136 2003.1.5.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases 0.72 67.0 4.39e-01 100.0% 37.5%
4395671 2003.1.5.160 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › N6_Mtase, Eco57I 0.72 66.0 4.62e-01 100.0% 36.5%
3388298 2003.1.5.62 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Eco57I 0.72 63.0 4.10e-01 96.6% 26.4%
4954651 2003.1.5.62 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Eco57I 0.71 62.0 5.02e-01 95.4% 60.6%
3839276 2003.1.5.22 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › N6_Mtase 0.71 65.0 4.42e-01 100.0% 40.0%
5053549 2003.1.5.62 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Eco57I 0.71 65.0 4.65e-01 100.0% 42.4%
3957602 2003.1.5.22 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › N6_Mtase 0.71 64.0 4.73e-01 100.0% 60.0%
4155768 2003.1.5.62 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Eco57I 0.71 64.0 4.23e-01 100.0% 29.3%
4944512 2003.1.5.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases 0.71 62.0 4.11e-01 100.0% 24.8%
3981664 2003.1.5.160 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › N6_Mtase, Eco57I 0.71 64.0 4.08e-01 100.0% 24.5%
None 0.71 63.0 4.17e-01 97.7% 31.8%
5046632 2003.1.5.62 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Eco57I 0.71 64.0 4.10e-01 100.0% 24.0%
None 0.70 60.0 4.18e-01 93.1% 39.6%
3602826 2003.1.5.160 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › N6_Mtase, Eco57I 0.70 62.0 4.06e-01 97.7% 26.4%
5049452 2003.1.5.62 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Eco57I 0.68 60.0 3.97e-01 100.0% 24.4%
5065151 2003.1.5.22 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › N6_Mtase 0.68 57.0 3.77e-01 95.4% 27.3%
5044197 2003.1.5.22 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › N6_Mtase 0.67 57.0 3.83e-01 93.1% 27.0%
3957880 2003.1.5.62 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Eco57I 0.67 60.0 4.34e-01 100.0% 37.6%
4120064 2003.1.5.62 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Eco57I 0.67 60.0 4.22e-01 100.0% 37.8%
3950008 2003.1.5.160 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › N6_Mtase, Eco57I 0.67 59.0 4.22e-01 98.9% 36.5%
5039414 3156.1.1.0 beta sandwiches › Cupredoxin-like › Cupredoxin-related › Cupredoxin-related 0.66 46.0 3.99e-01 72.4% 78.5%
1878856 2003.1.5.86 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › MmeI_Mtase 0.64 55.0 3.78e-01 96.6% 26.2%
4565957 2003.1.5.22 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › N6_Mtase 0.64 55.0 3.91e-01 95.4% 35.5%
5075147 2003.1.5.62 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Eco57I 0.63 53.0 3.75e-01 94.3% 29.1%
4380038 2003.1.5.160 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › N6_Mtase, Eco57I 0.63 50.0 3.67e-01 87.4% 35.1%
4034596 2003.1.5.22 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › N6_Mtase 0.62 49.0 3.44e-01 87.4% 27.9%
3465733 219.1.1.15 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › OTU 0.52 42.0 3.27e-01 92.0% 87.0%