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SRR1747018_scaffold_15_prodigal-single.1__X__X__00121
Bact-VirSRR1747018_scaffold_15_prodigal-single.1__X__X__00121
Identity
- Kingdom:
- phage
Quality
49.8
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-61
Domain cluster:
rep: SRR1747065_scaffold_9_prodigal-single.1__X__X__00055__D2-61
CATH (15)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1mo9A02 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.82 | 48.0 | 3.60e-01 | 100.0% | 26.7% |
| 4ii1A02 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.76 | 43.0 | 4.47e-01 | 85.0% | 58.9% |
| 1g6zA00 | 2.40.50.40 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.70 | 53.0 | 5.07e-01 | 100.0% | 70.0% |
| 2vb6A01 | 2.30.30.360 | Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal | 0.67 | 38.0 | 4.05e-01 | 76.7% | 63.0% |
| 1vwxM01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.63 | 39.0 | 3.51e-01 | 81.7% | 43.5% |
| 3qsjA00 | 3.90.79.10 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase | 0.61 | 51.0 | 3.51e-01 | 96.7% | 95.0% |
| 1uw0A01 | 3.30.1740.10 | Alpha Beta › 2-Layer Sandwich › first zn-finger domain of poly(adp-ribose) polymerase-1 › Zinc finger, PARP-type | 0.60 | 51.0 | 4.37e-01 | 95.0% | 99.0% |
| 3nznA00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.59 | 41.0 | 3.47e-01 | 73.3% | 44.7% |
| 2a5hA03 | 6.20.120.40 | Special › Other non-globular › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.59 | 33.0 | 3.31e-01 | 91.7% | 53.2% |
| 4eoyB00 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.56 | 45.0 | 3.72e-01 | 95.0% | 82.9% |
| 2avwD01 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.54 | 48.0 | 3.66e-01 | 100.0% | 44.0% |
| 3buxB03 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.54 | 42.0 | 3.88e-01 | 93.3% | 72.1% |
| 2yx6D01 | 3.30.420.130 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Dinitrogenase iron-molybdenum cofactor biosynthesis domain | 0.53 | 45.0 | 3.86e-01 | 100.0% | 81.4% |
| 2wweA01 | 3.30.1520.10 | Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain | 0.53 | 45.0 | 3.86e-01 | 100.0% | 67.3% |
| 5z7qA00 | 1.20.1330.10 | Mainly Alpha › Up-down Bundle › f41 fragment of flagellin, N-terminal domain › f41 fragment of flagellin, N-terminal domain | 0.50 | 36.0 | 2.70e-01 | 80.0% | 86.9% |
ECOD (27)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4000622 | 4.1.1.287 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF5641 | 0.82 | 49.0 | 3.81e-01 | 85.0% | 30.0% |
| 4154388 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.79 | 50.0 | 4.51e-01 | 100.0% | 48.8% |
| 3616769 | 4.1.1.287 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF5641 | 0.78 | 49.0 | 4.14e-01 | 86.7% | 40.0% |
| 5035835 | 4.6.1.0 ↗ | beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain | 0.76 | 50.0 | 5.07e-01 | 96.7% | 68.3% |
| 4930963 | 2003.1.10.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › PreATP-grasp domain | 0.74 | 65.0 | 6.08e-01 | 98.3% | 96.0% |
| 3928430 | 4.1.1.223 ↗ | beta barrels › SH3 › SH3 › SH3 › KIF2A-like_1st | 0.73 | 52.0 | 4.94e-01 | 93.3% | 64.3% |
| 5010554 | 4.6.1.0 ↗ | beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain | 0.72 | 48.0 | 4.72e-01 | 98.3% | 63.1% |
| 638 | 4.8.1.1 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo | 0.70 | 53.0 | 5.07e-01 | 100.0% | 70.0% |
| 4949301 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.65 | 56.0 | 4.37e-01 | 100.0% | 60.7% |
| 3960168 | 802.1.1.1 ↗ | a+b two layers › Hypothetical protein TM0160 › Hypothetical protein TM0160 › Hypothetical protein TM0160 › BFN_dom | 0.64 | 44.0 | 4.67e-01 | 98.3% | 86.0% |
| 3530591 | 4.1.1.12 ↗ | beta barrels › SH3 › SH3 › SH3 › PWWP | 0.64 | 49.0 | 3.84e-01 | 81.7% | 61.6% |
| 5058925 | 4.6.1.0 ↗ | beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain | 0.63 | 48.0 | 4.62e-01 | 93.3% | 70.0% |
| 5069961 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.59 | 41.0 | 2.96e-01 | 100.0% | 25.1% |
| 3664617 | 2.1.1.223 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF28721 | 0.58 | 43.0 | 3.85e-01 | 80.0% | 57.6% |
| 4981192 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.58 | 47.0 | 3.25e-01 | 100.0% | 40.8% |
| 3898521 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.57 | 44.0 | 2.81e-01 | 90.0% | 22.2% |
| 4025311 | 295.1.1.0 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain | 0.57 | 39.0 | 4.16e-01 | 71.7% | 88.0% |
| 3619473 | 2003.1.1.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains | 0.56 | 48.0 | 3.41e-01 | 100.0% | 48.5% |
| 3785325 | 376.1.1.21 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 | 0.56 | 40.0 | 3.51e-01 | 76.7% | 61.1% |
| 3487873 | 377.1.1.0 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like | 0.55 | 37.0 | 3.73e-01 | 83.3% | 70.0% |
| 4928637 | 2498.1.1.6 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M3 | 0.54 | 41.0 | 2.44e-01 | 85.0% | 59.5% |
| 3921128 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.53 | 44.0 | 3.19e-01 | 100.0% | 43.4% |
| 3477068 | 209.1.1.0 ↗ | a+b complex topology › C-type lectin-like › C-type lectin-like › C-type lectin-like | 0.53 | 40.0 | 2.97e-01 | 81.7% | 48.1% |
| 4029816 | 2006.1.1.4 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › NIF | 0.53 | 42.0 | 2.79e-01 | 90.0% | 24.2% |
| 4013689 | 284.2.1.0 ↗ | a+b two layers › FKBP-like › Chitinase insertion domain › Chitinase insertion domain | 0.53 | 46.0 | 3.42e-01 | 98.3% | 58.9% |
| 5040907 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.52 | 41.0 | 2.97e-01 | 98.3% | 83.0% |
| 4951189 | 802.1.1.0 ↗ | a+b two layers › Hypothetical protein TM0160 › Hypothetical protein TM0160 › Hypothetical protein TM0160 | 0.51 | 37.0 | 3.98e-01 | 93.3% | 92.0% |
D2
medium
residues 64-191