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SRR1747018_scaffold_15_prodigal-single.1__X__X__00145
Bact-VirSRR1747018_scaffold_15_prodigal-single.1__X__X__00145
Identity
- Kingdom:
- phage
Quality
71.9
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-81
Domain cluster:
rep: SRR1747065_scaffold_9_prodigal-single.1__X__X__00160__D6-82
CATH (7)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1mvfD00 | 2.10.260.10 | Mainly Beta › Ribbon › Pemi-like Protein 1; Chain: D › | 0.52 | 22.0 | 2.80e-01 | 71.2% | 65.9% |
| 4c9yA00 | 1.10.10.1890 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Ska1 microtubule binding domain-like | 0.52 | 37.0 | 3.26e-01 | 76.2% | 77.2% |
| 4uhiA01 | 1.10.630.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 | 0.52 | 37.0 | 2.41e-01 | 77.5% | 71.3% |
| 4ijaA03 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.51 | 37.0 | 3.12e-01 | 78.8% | 98.0% |
| 6lcqA00 | 3.30.30.10 | Alpha Beta › 2-Layer Sandwich › Defensin A-like › Knottin, scorpion toxin-like | 0.51 | 28.0 | 3.30e-01 | 75.0% | 79.6% |
| 1g8mA02 | 3.40.140.20 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › AICAR transformylase, duplication domain | 0.50 | 40.0 | 3.18e-01 | 88.7% | 77.3% |
| 5nr1A01 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.50 | 37.0 | 3.40e-01 | 78.8% | 81.1% |
ECOD (3)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4992345 | 1.1.3.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › AbrB | 0.59 | 25.0 | 3.18e-01 | 71.2% | 66.7% |
| 5001967 | 1.1.3.2 ↗ | beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin | 0.57 | 25.0 | 3.06e-01 | 72.5% | 62.0% |
| 3599409 | 261.1.1.1 ↗ | a+b complex topology › Hect, E3 ligase catalytic domain › Hect, E3 ligase catalytic domain › Hect, E3 ligase catalytic domain › HECT | 0.54 | 37.0 | 2.34e-01 | 71.2% | 50.2% |
D2
high
residues 145-219
Domain cluster:
representative
CATH (19)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 7w01A01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.74 | 57.0 | 4.07e-01 | 84.0% | 30.2% |
| 3a06B03 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.74 | 60.0 | 5.70e-01 | 88.0% | 84.1% |
| 2bnkA00 | 1.10.8.600 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Phage phi29 replication organiser protein p16.7-like | 0.73 | 52.0 | 5.57e-01 | 93.3% | 87.5% |
| 3iieB03 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.71 | 55.0 | 5.33e-01 | 84.0% | 84.7% |
| 3tuiD01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.69 | 53.0 | 3.75e-01 | 84.0% | 28.9% |
| 7jv7B01 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.65 | 51.0 | 4.08e-01 | 85.3% | 43.8% |
| 2wyhB04 | 1.20.1270.50 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Glycoside hydrolase family 38, central domain | 0.64 | 57.0 | 5.16e-01 | 98.7% | 92.1% |
| 8hbfB01 | 3.90.1520.10 | Alpha Beta › Alpha-Beta Complex › H-NOX domain › H-NOX domain | 0.61 | 45.0 | 3.41e-01 | 88.0% | 32.6% |
| 1kblA05 | 1.20.80.30 | Mainly Alpha › Up-down Bundle › Acyl-CoA Binding Protein › | 0.59 | 50.0 | 4.76e-01 | 93.3% | 79.8% |
| 6dlzA01 | 1.20.140.150 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › | 0.59 | 52.0 | 3.98e-01 | 100.0% | 77.9% |
| 4kb2A01 | 1.10.132.20 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor | 0.58 | 50.0 | 4.39e-01 | 92.0% | 95.4% |
| 2j9wB00 | 1.20.120.1130 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Vps28 C-terminal domain | 0.58 | 48.0 | 4.41e-01 | 90.7% | 76.8% |
| 4akgA14 | 1.20.1280.160 | Mainly Alpha › Up-down Bundle › Monooxygenase › | 0.57 | 42.0 | 3.70e-01 | 77.3% | 68.8% |
| 1e3dB00 | 1.10.645.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome-c3 Hydrogenase; chain B › Cytochrome-c3 Hydrogenase, chain B | 0.57 | 49.0 | 3.01e-01 | 100.0% | 29.4% |
| 8e9gK01 | 1.10.287.3510 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.54 | 48.0 | 4.50e-01 | 98.7% | 90.1% |
| 2jgdB02 | 3.40.50.970 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Thiamin diphosphate (ThDP)-binding fold, Pyr/PP domains | 0.53 | 41.0 | 2.82e-01 | 89.3% | 68.0% |
| 6cgvM01 | 1.20.120.1500 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Pre-hexon-linking protein IIIa | 0.53 | 44.0 | 3.75e-01 | 97.3% | 82.1% |
| 4iiwA01 | 3.30.1490.480 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Endolytic murein transglycosylase | 0.52 | 34.0 | 3.48e-01 | 84.0% | 68.4% |
| 2p3yA02 | 1.10.3360.10 | Mainly Alpha › Orthogonal Bundle › VPA0735-like fold › VPA0735-like domain | 0.52 | 40.0 | 3.60e-01 | 84.0% | 85.0% |
ECOD (12)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3220017 | 174.1.1.13 ↗ | few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › DUF2700 | 0.73 | 52.0 | 4.11e-01 | 74.7% | 38.6% |
| 3210776 | 4009.1.1.0 ↗ | alpha bundles › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins | 0.72 | 57.0 | 5.29e-01 | 85.3% | 92.6% |
| 2872820 | 4070.1.1.0 ↗ | alpha arrays › FtsH protease domain-like › FtsH protease domain-like › FtsH protease domain-like | 0.70 | 50.0 | 3.61e-01 | 74.7% | 38.8% |
| 4033265 | 2004.1.1.5 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran | 0.69 | 53.0 | 3.75e-01 | 82.7% | 28.5% |
| 4983854 | 2004.1.1.5 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran | 0.66 | 50.0 | 3.46e-01 | 86.7% | 22.9% |
| 3877946 | 108.1.1.30 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_8 | 0.64 | 50.0 | 3.33e-01 | 86.7% | 39.9% |
| 3721449 | 7076.1.1.0 ↗ | 0.63 | 49.0 | 4.69e-01 | 82.7% | 100.0% | |
| 3711632 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.62 | 42.0 | 3.84e-01 | 70.7% | 72.0% |
| 5044493 | 174.1.1.0 ↗ | few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain | 0.58 | 49.0 | 3.98e-01 | 94.7% | 79.3% |
| 4462943 | 166.1.1.1 ↗ | alpha superhelices › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › DXPR_C | 0.52 | 41.0 | 3.93e-01 | 93.3% | 73.3% |
| 3167535 | 102.1.1.18 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › SAM_Ste50p | 0.52 | 38.0 | 3.81e-01 | 86.7% | 76.2% |
| 3801946 | 101.1.2.462 ↗ | alpha arrays › HTH › HTH › winged helix domain › DUF7647 | 0.51 | 37.0 | 2.97e-01 | 78.7% | 43.2% |