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SRR1747018_scaffold_15_prodigal-single.1__X__X__00147
Bact-VirSRR1747018_scaffold_15_prodigal-single.1__X__X__00147
Identity
- Kingdom:
- phage
Quality
82.7
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-70
Domain cluster:
representative
CATH (39)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4q66D01 | 6.20.120.50 | Special › Other non-globular › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.75 | 40.0 | 4.00e-01 | 79.7% | 49.3% |
| 2haxA01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.73 | 40.0 | 4.80e-01 | 91.3% | 86.0% |
| 2vknA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.72 | 40.0 | 4.11e-01 | 82.6% | 56.1% |
| 1jegA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.72 | 38.0 | 4.04e-01 | 75.4% | 58.3% |
| 2dl5A00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.68 | 39.0 | 3.73e-01 | 71.0% | 48.7% |
| 2kcmA00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.67 | 42.0 | 4.18e-01 | 81.2% | 59.5% |
| 3ab1A02 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.67 | 37.0 | 3.01e-01 | 78.3% | 30.2% |
| 3oyyA02 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.67 | 39.0 | 4.03e-01 | 81.2% | 60.0% |
| 1z47A03 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.66 | 39.0 | 4.54e-01 | 81.2% | 83.7% |
| 2a5hA03 | 6.20.120.40 | Special › Other non-globular › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.64 | 32.0 | 3.43e-01 | 98.6% | 53.2% |
| 2dk3A00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.64 | 41.0 | 3.86e-01 | 85.5% | 53.5% |
| 2ej9A02 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.63 | 37.0 | 4.26e-01 | 94.2% | 81.6% |
| 4mi7A00 | 3.90.70.170 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › | 0.61 | 44.0 | 3.67e-01 | 81.2% | 43.5% |
| 2hbpA00 | 2.30.30.700 | Mainly Beta › Roll › SH3 type barrels. › SLA1 homology domain 1 | 0.60 | 50.0 | 5.15e-01 | 98.6% | 95.5% |
| 4n9jA02 | 3.30.1120.130 | Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › | 0.60 | 43.0 | 3.77e-01 | 87.0% | 49.5% |
| 1w97L02 | 3.30.420.370 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › GspL cytoplasmic domain, C-terminal subdomain | 0.60 | 45.0 | 4.43e-01 | 82.6% | 92.0% |
| 3d0fA01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.60 | 39.0 | 3.92e-01 | 88.4% | 64.4% |
| 3d6wB02 | 2.20.25.10 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.60 | 35.0 | 4.15e-01 | 89.9% | 100.0% |
| 4phtY02 | 3.30.420.370 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › GspL cytoplasmic domain, C-terminal subdomain | 0.60 | 44.0 | 4.58e-01 | 82.6% | 88.7% |
| 5tkwA02 | 3.30.420.370 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › GspL cytoplasmic domain, C-terminal subdomain | 0.59 | 45.0 | 4.62e-01 | 84.1% | 90.9% |
| 6ui4A02 | 1.20.58.530 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.59 | 49.0 | 3.80e-01 | 92.8% | 45.2% |
| 1icwB00 | 2.40.50.40 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.57 | 40.0 | 4.08e-01 | 78.3% | 75.8% |
| 2d7vB00 | 3.30.300.20 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain | 0.57 | 39.0 | 3.09e-01 | 72.5% | 66.7% |
| 2gtiA01 | 3.30.160.820 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Nsp15 N-terminal domain-like | 0.56 | 39.0 | 4.02e-01 | 100.0% | 78.1% |
| 2wfwB02 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.55 | 41.0 | 4.19e-01 | 78.3% | 89.6% |
| 4oonA03 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.54 | 40.0 | 3.50e-01 | 81.2% | 52.9% |
| 2q0lA01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.53 | 46.0 | 3.41e-01 | 98.6% | 52.9% |
| 2vouB01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.52 | 45.0 | 3.16e-01 | 100.0% | 46.3% |
| 3udfA03 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.52 | 39.0 | 3.52e-01 | 81.2% | 57.9% |
| 4dapA01 | 2.40.50.580 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.52 | 42.0 | 4.04e-01 | 89.9% | 91.3% |
| 3k8rA01 | 3.30.2020.40 | Alpha Beta › 2-Layer Sandwich › NE0471 N-terminal domain-like › Uncharacterised protein PF10387, DUF2442 | 0.52 | 36.0 | 3.67e-01 | 73.9% | 89.7% |
| 1yr1A00 | 3.40.50.10960 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.52 | 37.0 | 3.12e-01 | 75.4% | 78.2% |
| 3h8lA01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.52 | 45.0 | 3.27e-01 | 100.0% | 54.6% |
| 2qc5A00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.52 | 41.0 | 2.80e-01 | 91.3% | 89.3% |
| 4k22B01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.51 | 45.0 | 3.11e-01 | 100.0% | 49.0% |
| 5x68A00 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.51 | 44.0 | 2.76e-01 | 94.2% | 58.4% |
| 4hb9A01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.51 | 44.0 | 2.79e-01 | 100.0% | 62.7% |
| 3rp7A01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.51 | 44.0 | 3.37e-01 | 100.0% | 52.4% |
| 2k5nA00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.50 | 42.0 | 4.11e-01 | 91.3% | 93.2% |
ECOD (29)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3529708 | 4.1.1.1 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_1 | 0.77 | 40.0 | 3.95e-01 | 78.3% | 46.7% |
| 3387924 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.73 | 43.0 | 3.89e-01 | 81.2% | 43.2% |
| 1269916 | 2003.1.2.24 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 | 0.72 | 40.0 | 3.42e-01 | 82.6% | 33.6% |
| 3218646 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.71 | 38.0 | 3.95e-01 | 100.0% | 55.4% |
| 4024623 | 2.1.1.11 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › eIF-1a | 0.68 | 40.0 | 3.86e-01 | 81.2% | 51.2% |
| 4028871 | 2.1.1.10 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › EFP | 0.64 | 39.0 | 3.88e-01 | 81.2% | 56.2% |
| 5036086 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.63 | 45.0 | 4.28e-01 | 100.0% | 63.7% |
| 4872412 | 2003.1.2.15 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 | 0.63 | 39.0 | 2.97e-01 | 79.7% | 25.6% |
| 4601711 | 2484.1.1.47 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › T2SSL | 0.62 | 47.0 | 4.28e-01 | 82.6% | 72.6% |
| 4532614 | 2.1.1.70 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Prot_ATP_ID_OB_C | 0.62 | 38.0 | 3.96e-01 | 79.7% | 66.2% |
| 3497478 | 868.1.1.3 ↗ | a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › Med20 | 0.59 | 46.0 | 3.28e-01 | 85.5% | 32.6% |
| 4997916 | 2484.1.1.124 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › OrfB_IS605 | 0.59 | 47.0 | 3.60e-01 | 87.0% | 89.4% |
| 3476178 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.58 | 43.0 | 3.51e-01 | 78.3% | 71.7% |
| 5070602 | 324.1.1.1 ↗ | a+b two layers › OsmC-like › OsmC-like › OsmC-like › OsmC | 0.55 | 42.0 | 3.39e-01 | 84.1% | 95.7% |
| 5014724 | 295.1.1.51 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › FtsQ_DivIB_C | 0.54 | 41.0 | 3.68e-01 | 85.5% | 99.0% |
| 3262589 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.53 | 44.0 | 3.58e-01 | 95.7% | 50.8% |
| 4997881 | 2003.1.3.3 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › Pyr_redox_2 | 0.53 | 47.0 | 3.36e-01 | 98.6% | 58.5% |
| 3589957 | 2003.1.3.3 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › Pyr_redox_2 | 0.52 | 46.0 | 3.28e-01 | 95.7% | 55.9% |
| 3963171 | 2003.1.2.24 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 | 0.52 | 46.0 | 2.88e-01 | 98.6% | 64.4% |
| 3924808 | 719.2.1.0 ↗ | beta barrels › XRCC4, N-terminal domain-like › NE0471 N-terminal domain-like › NE0471 N-terminal domain-like | 0.52 | 36.0 | 3.51e-01 | 73.9% | 83.7% |
| 3690378 | 2003.1.2.24 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 | 0.52 | 45.0 | 3.06e-01 | 98.6% | 56.2% |
| 5047621 | 2003.1.2.24 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 | 0.52 | 45.0 | 3.24e-01 | 95.7% | 55.3% |
| 3624498 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.51 | 42.0 | 3.58e-01 | 95.7% | 60.0% |
| 4023722 | 2003.1.2.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain | 0.51 | 45.0 | 2.75e-01 | 98.6% | 72.7% |
| 3589758 | 2003.1.2.24 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 | 0.51 | 45.0 | 3.36e-01 | 98.6% | 64.0% |
| 4066093 | 2003.1.2.16 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3,NAD_binding_8 | 0.50 | 45.0 | 2.89e-01 | 98.6% | 32.1% |
| 3299665 | 244.1.1.11 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C › SE | 0.50 | 40.0 | 2.68e-01 | 87.0% | 60.4% |
| 3549024 | 2003.1.2.16 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3,NAD_binding_8 | 0.50 | 43.0 | 2.62e-01 | 94.2% | 46.8% |
| 3166171 | 3355.1.1.16 ↗ | alpha complex topology › dicarboxylate/sodium symporter › dicarboxylate/sodium symporter › dicarboxylate/sodium symporter › DcuC | 0.50 | 39.0 | 2.39e-01 | 88.4% | 38.6% |
D2
high
residues 146-212
Domain cluster:
representative
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2kw6A00 | 6.10.140.1300 | Special › Helix non-globular › Helix Hairpins › | 0.59 | 36.0 | 3.67e-01 | 77.6% | 63.1% |
| 3mlfE00 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.53 | 46.0 | 4.33e-01 | 100.0% | 87.2% |
| 6f8hC00 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.52 | 37.0 | 3.42e-01 | 76.1% | 71.0% |
| 3kxaA02 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.51 | 39.0 | 4.02e-01 | 83.6% | 89.4% |
ECOD (5)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3590852 | 101.1.9.0 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain | 0.59 | 42.0 | 3.80e-01 | 76.1% | 66.3% |
| 3288205 | 101.1.9.17 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 | 0.59 | 44.0 | 4.16e-01 | 80.6% | 91.3% |
| 3589956 | 4967.1.1.11 ↗ | alpha bundles › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › GIIM | 0.55 | 33.0 | 2.51e-01 | 92.5% | 24.5% |
| 4955772 | 169.1.1.1 ↗ | alpha complex topology › Aldehyde ferredoxin oxidoreductase-C › Aldehyde ferredoxin oxidoreductase-C › Aldehyde ferredoxin oxidoreductase-C › AFOR_C | 0.53 | 44.0 | 2.87e-01 | 100.0% | 42.3% |
| 4034522 | 857.1.1.2 ↗ | a+b duplicates or obligate multimers › Cell division protein ZapA-like › Cell division protein ZapA-like › Cell division protein ZapA-like › PVL_ORF50 | 0.50 | 43.0 | 3.89e-01 | 98.5% | 69.5% |