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SRR1747018_scaffold_15_prodigal-single.1__X__X__00169

Bact-Vir

SRR1747018_scaffold_15_prodigal-single.1__X__X__00169

Identity

Kingdom:
phage

Quality

72.2 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-50_67-155
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF01987.24 best AIM24 34.8 1.90e-08 91.4% 58.1%
CATH (18)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1yoxA00 3.60.160.10 Alpha Beta › 4-Layer Sandwich › Double-stranded beta-helix › Mitochondrial biogenesis AIM24 0.85 69.0 6.13e-01 100.0% 62.1%
1pg6A00 3.60.160.10 Alpha Beta › 4-Layer Sandwich › Double-stranded beta-helix › Mitochondrial biogenesis AIM24 0.79 75.0 6.33e-01 100.0% 65.7%
1y3tA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.62 46.0 4.36e-01 76.3% 83.1%
4llfD02 2.60.40.4030 Mainly Beta › Sandwich › Immunoglobulin-like › 0.61 38.0 4.09e-01 72.7% 72.5%
1opoA02 2.60.40.1780 Mainly Beta › Sandwich › Immunoglobulin-like › Carmovirus coat protein 0.60 38.0 4.29e-01 72.7% 84.5%
3h8uA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.59 41.0 4.40e-01 75.5% 81.1%
2i45D00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.57 35.0 4.11e-01 99.3% 85.9%
2fqpA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.57 37.0 4.42e-01 99.3% 96.8%
2wfpA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.56 34.0 3.94e-01 97.8% 84.7%
3fjsC00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.55 30.0 3.39e-01 92.8% 67.3%
7zvmA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.54 38.0 4.30e-01 74.8% 97.1%
6l4cA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.53 47.0 4.28e-01 95.0% 84.2%
2yu2A01 2.60.120.650 Mainly Beta › Sandwich › Jelly Rolls › Cupin 0.53 41.0 3.24e-01 81.3% 92.2%
1fxzA02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.52 46.0 4.35e-01 95.7% 89.0%
1pmiA03 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.52 35.0 3.77e-01 99.3% 80.7%
2o8qA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.52 36.0 3.79e-01 76.3% 80.3%
4lejA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.51 45.0 4.14e-01 95.0% 87.6%
1y9qA02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.51 32.0 3.78e-01 97.1% 93.5%
ECOD (41)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3288334 10.12.1.6 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › AIM24 0.85 81.0 6.73e-01 99.3% 66.4%
4361188 10.12.1.6 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › AIM24 0.85 80.0 6.56e-01 98.6% 69.9%
4553814 10.12.1.6 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › AIM24 0.84 79.0 6.56e-01 98.6% 75.8%
3288402 10.12.1.6 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › AIM24 0.84 79.0 6.68e-01 98.6% 64.8%
3280187 10.12.1.6 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › AIM24 0.84 80.0 6.88e-01 100.0% 68.3%
5038303 10.12.1.6 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › AIM24 0.83 79.0 6.54e-01 99.3% 68.4%
4426211 10.12.1.6 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › AIM24 0.83 79.0 6.68e-01 99.3% 69.0%
5031108 10.12.1.6 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › AIM24 0.82 77.0 6.33e-01 99.3% 63.0%
4927461 10.12.1.6 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › AIM24 0.82 77.0 6.47e-01 99.3% 66.2%
3684903 10.12.1.6 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › AIM24 0.81 77.0 6.48e-01 100.0% 64.1%
4239884 10.12.1.6 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › AIM24 0.81 77.0 6.26e-01 99.3% 68.5%
4999619 10.12.1.6 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › AIM24 0.81 76.0 6.33e-01 100.0% 66.1%
4304396 10.12.1.6 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › AIM24 0.81 77.0 6.45e-01 98.6% 69.8%
4973502 10.12.1.6 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › AIM24 0.81 76.0 6.44e-01 99.3% 67.0%
4960337 10.12.1.6 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › AIM24 0.80 76.0 6.26e-01 99.3% 60.1%
3782559 10.12.1.6 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › AIM24 0.80 77.0 6.57e-01 100.0% 70.2%
4566585 10.12.1.6 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › AIM24 0.80 75.0 6.15e-01 98.6% 67.9%
5038130 10.12.1.6 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › AIM24 0.80 75.0 6.34e-01 99.3% 66.5%
5023204 10.12.1.6 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › AIM24 0.80 77.0 6.38e-01 100.0% 64.0%
5022362 10.12.1.0 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.80 68.0 6.27e-01 100.0% 72.4%
4992289 10.12.1.6 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › AIM24 0.80 76.0 6.29e-01 100.0% 63.1%
4947444 10.12.1.6 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › AIM24 0.80 75.0 6.18e-01 99.3% 63.9%
5038168 10.12.1.6 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › AIM24 0.79 75.0 6.33e-01 99.3% 67.0%
3289036 10.12.1.6 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › AIM24 0.79 70.0 6.26e-01 96.4% 69.2%
1366 10.12.1.6 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › AIM24 0.79 75.0 6.33e-01 100.0% 65.7%
4932199 10.12.1.6 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › AIM24 0.78 73.0 6.15e-01 99.3% 65.9%
3965981 10.12.1.6 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › AIM24 0.78 73.0 6.02e-01 99.3% 66.4%
4587968 10.12.1.6 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › AIM24 0.77 71.0 6.45e-01 96.4% 96.1%
3803255 10.12.1.6 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › AIM24 0.76 72.0 5.94e-01 100.0% 66.1%
5019767 10.12.1.6 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › AIM24 0.73 66.0 5.51e-01 95.7% 93.3%
3876336 11.1.1.907 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › BBS7_GAE 0.60 46.0 4.69e-01 100.0% 83.0%
134819 10.12.1.39 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 0.59 41.0 4.40e-01 75.5% 81.1%
3484744 11.1.1.907 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › BBS7_GAE 0.58 45.0 4.82e-01 100.0% 94.2%
3227423 11.1.5.145 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › BBS7_GAE 0.58 45.0 4.89e-01 100.0% 98.3%
3701281 11.1.1.907 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › BBS7_GAE 0.57 45.0 4.78e-01 100.0% 95.0%
4540203 11.1.5.85 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › PFF1_C 0.53 33.0 2.98e-01 74.8% 43.6%
5043609 4081.1.1.0 beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related 0.52 46.0 4.18e-01 100.0% 96.4%
4327708 11.1.5.85 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › PFF1_C 0.52 37.0 4.13e-01 97.1% 95.4%
3713401 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 43.0 4.44e-01 100.0% 96.9%
3548893 11.1.1.805 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_PDGFR_d4 0.51 35.0 3.50e-01 100.0% 68.6%
4956367 4081.1.1.0 beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related 0.51 46.0 4.43e-01 100.0% 97.5%
D2 medium residues 156-224
PDB
Domain cluster: representative
CATH (14)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
7vjvA01 2.60.120.590 Mainly Beta › Sandwich › Jelly Rolls › Alpha-ketoglutarate-dependent dioxygenase AlkB-like 0.62 52.0 3.73e-01 95.7% 52.7%
3btxA00 2.60.120.590 Mainly Beta › Sandwich › Jelly Rolls › Alpha-ketoglutarate-dependent dioxygenase AlkB-like 0.58 48.0 3.55e-01 97.1% 69.1%
3thpA02 2.60.120.1520 Mainly Beta › Sandwich › Jelly Rolls › 0.58 48.0 3.84e-01 97.1% 73.7%
2eabB01 2.70.98.50 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › putative glycoside hydrolase family protein from bacillus halodurans 0.55 47.0 3.30e-01 100.0% 46.4%
4xcbD00 2.60.120.620 Mainly Beta › Sandwich › Jelly Rolls › q2cbj1_9rhob like domain 0.54 46.0 3.23e-01 100.0% 66.9%
1wzaA03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.53 42.0 4.12e-01 98.6% 79.7%
1nlqE00 2.60.120.340 Mainly Beta › Sandwich › Jelly Rolls › Nucleoplasmin core domain 0.53 44.0 4.01e-01 97.1% 99.0%
5ep9D00 2.60.120.620 Mainly Beta › Sandwich › Jelly Rolls › q2cbj1_9rhob like domain 0.52 43.0 3.10e-01 100.0% 58.7%
2x1wL02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 41.0 3.73e-01 97.1% 80.0%
1xe0C00 2.60.120.340 Mainly Beta › Sandwich › Jelly Rolls › Nucleoplasmin core domain 0.51 43.0 3.91e-01 100.0% 98.0%
4hslA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.51 42.0 3.29e-01 97.1% 50.0%
3abgB03 2.60.40.420 Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins 0.50 40.0 3.10e-01 94.2% 57.5%
2q30A01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.50 42.0 3.97e-01 100.0% 93.2%
6lnhB01 2.60.120.620 Mainly Beta › Sandwich › Jelly Rolls › q2cbj1_9rhob like domain 0.50 36.0 2.65e-01 79.7% 87.8%
ECOD (26)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4960337 10.12.1.6 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › AIM24 0.82 74.0 5.00e-01 100.0% 29.4%
4927461 10.12.1.6 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › AIM24 0.75 64.0 4.45e-01 100.0% 29.7%
3288334 10.12.1.6 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › AIM24 0.72 64.0 4.47e-01 100.0% 30.9%
4934579 4081.1.1.0 beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related 0.62 46.0 3.71e-01 95.7% 40.0%
5022898 10.34.1.0 beta sandwiches › jelly-roll › Protein CLP1 jelly-roll domain › Protein CLP1 jelly-roll domain 0.60 49.0 4.66e-01 98.6% 78.8%
3232310 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 44.0 4.05e-01 89.9% 83.2%
3847173 10.12.1.110 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › OGFOD2-like 0.55 46.0 3.17e-01 97.1% 46.5%
3206860 10.12.1.0 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.55 47.0 4.17e-01 98.6% 76.0%
3261600 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 40.0 3.93e-01 97.1% 74.3%
3393261 10.12.1.0 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.54 45.0 3.13e-01 94.2% 35.2%
5071462 10.34.1.0 beta sandwiches › jelly-roll › Protein CLP1 jelly-roll domain › Protein CLP1 jelly-roll domain 0.54 45.0 4.43e-01 97.1% 86.7%
3937167 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 42.0 3.80e-01 88.4% 98.0%
3439462 10.12.1.27 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_3 0.54 46.0 3.85e-01 100.0% 60.9%
3491695 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 43.0 3.48e-01 97.1% 70.6%
3231620 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.53 45.0 3.88e-01 100.0% 86.7%
3546349 10.12.1.0 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.53 45.0 4.00e-01 95.7% 66.0%
3602190 304.158.1.2 a+b two layers › Alpha-beta plaits › CRISPR system Cas5 homologs › CRISPR system Cas5 homologs › Cas_Cas5d 0.53 42.0 3.03e-01 95.7% 79.6%
4001704 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.52 44.0 3.82e-01 100.0% 83.5%
1180071 10.12.1.49 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_7 0.52 44.0 3.82e-01 100.0% 68.1%
3488329 304.9.1.0 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.52 40.0 3.31e-01 85.5% 83.1%
4972680 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.52 43.0 4.02e-01 100.0% 93.7%
3593406 10.34.1.0 beta sandwiches › jelly-roll › Protein CLP1 jelly-roll domain › Protein CLP1 jelly-roll domain 0.51 44.0 4.29e-01 97.1% 92.0%
5078262 10.4.1.1 beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › CUB 0.51 42.0 3.76e-01 100.0% 90.0%
4877319 10.12.1.27 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_3 0.51 37.0 3.58e-01 95.7% 68.3%
3936909 10.4.1.0 beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain 0.51 43.0 3.72e-01 100.0% 83.5%
3661846 10.12.1.0 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.51 42.0 3.32e-01 97.1% 48.1%