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SRR1747018_scaffold_15_prodigal-single.1__X__X__00178

Bact-Vir

SRR1747018_scaffold_15_prodigal-single.1__X__X__00178

Identity

Kingdom:
phage

Quality

90.2 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-106
PDB
Domain cluster: representative
CATH (18)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1z4vA00 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.65 46.0 3.04e-01 74.8% 61.3%
6qp7A01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.62 45.0 2.90e-01 74.8% 90.0%
1mveA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.60 43.0 3.29e-01 75.7% 75.2%
6n8pA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.59 43.0 2.97e-01 76.7% 80.7%
1yqfB00 3.10.280.10 Alpha Beta › Roll › Mitochondrial Matrix Protein; Chain A › Mitochondrial glycoprotein 0.57 42.0 3.55e-01 94.2% 44.6%
3holA04 2.40.160.90 Mainly Beta › Beta Barrel › Porin › 0.57 40.0 3.63e-01 72.8% 88.3%
1e8uA00 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.57 50.0 3.28e-01 96.1% 97.3%
4d47A00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.56 47.0 3.17e-01 92.2% 53.3%
2hesX00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.56 47.0 3.35e-01 91.3% 38.6%
4nehA01 2.130.10.130 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Integrin alpha, N-terminal 0.55 46.0 3.10e-01 90.3% 51.8%
2giaA00 2.30.31.40 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › 0.55 44.0 3.84e-01 85.4% 70.8%
3rc2A02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.53 39.0 3.23e-01 76.7% 90.5%
1t6aA02 3.30.310.120 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Rbstp2229 like protein 0.52 33.0 3.78e-01 90.3% 85.9%
1vbfA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.52 39.0 3.03e-01 78.6% 62.1%
5zc1D00 3.10.450.10 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 44.0 4.57e-01 92.2% 100.0%
4hkqA04 3.10.20.370 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.51 33.0 3.75e-01 78.6% 89.5%
4emoC00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 41.0 3.99e-01 87.4% 97.4%
4qa8A00 2.50.20.20 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › 0.51 41.0 3.28e-01 88.3% 56.2%
ECOD (51)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3583812 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.70 49.0 3.25e-01 72.8% 70.6%
3607171 5.1.4.277 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, Beta-prop_EIPR1 0.70 49.0 3.36e-01 72.8% 72.3%
3171037 5.1.4.378 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PF27702 0.69 48.0 3.22e-01 72.8% 71.4%
3924241 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.68 48.0 2.86e-01 72.8% 28.9%
3438347 5.1.5.63 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › DUF1618 0.66 46.0 4.18e-01 72.8% 99.3%
3783069 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.66 46.0 2.96e-01 71.8% 74.1%
3785876 5.1.4.262 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, Beta-prop_CAF1B_HIR1 0.65 48.0 3.19e-01 76.7% 78.5%
3224940 5.1.5.105 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › Beta-prop_IFT140_1st 0.65 45.0 3.04e-01 71.8% 81.6%
3401376 5.1.4.8 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CNH 0.65 45.0 3.17e-01 72.8% 68.6%
3316054 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.64 45.0 2.97e-01 72.8% 61.4%
3629697 5.1.3.183 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FG-GAP, FG-GAP_3 0.63 45.0 3.06e-01 74.8% 89.0%
4000117 5.1.4.224 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40_RFWD3 0.61 42.0 2.97e-01 71.8% 88.2%
3469587 5.1.3.118 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 0.61 48.0 3.36e-01 85.4% 90.7%
3786488 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.60 44.0 3.07e-01 76.7% 83.4%
3516856 5.1.4.327 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, WD40_MABP1-WDR62_2nd 0.60 50.0 2.98e-01 89.3% 16.0%
3394329 5.1.4.45 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PQQ_3 0.59 49.0 3.33e-01 89.3% 33.5%
3436743 5.1.3.67 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_1 0.59 41.0 2.93e-01 71.8% 80.9%
3446490 5.1.3.68 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › DUF1618 0.58 46.0 3.09e-01 83.5% 97.9%
3531356 5.1.5.192 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40, WD40_MABP1-WDR62_2nd 0.58 48.0 3.15e-01 90.3% 27.4%
None — 0.57 43.0 3.01e-01 79.6% 53.4%
3434838 5.1.3.67 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_1 0.57 50.0 3.50e-01 94.2% 91.4%
3826655 5.1.3.67 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_1 0.57 44.0 3.21e-01 81.6% 80.0%
3743943 5.1.5.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.56 47.0 3.06e-01 90.3% 27.6%
3484052 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.56 47.0 3.17e-01 90.3% 52.5%
4528719 4.1.1.438 ↗ beta barrels › SH3 › SH3 › SH3 › PF27440 0.56 33.0 3.95e-01 76.7% 90.8%
3831169 5.1.5.66 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › FBA_1 0.56 41.0 3.05e-01 76.7% 82.9%
3417117 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.56 46.0 3.18e-01 87.4% 37.9%
3826250 5.1.4.254 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, Beta-prop_NOL10_N 0.56 47.0 2.75e-01 89.3% 16.0%
3526472 5.1.5.104 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40, ANAPC4_WD40, WD40_MABP1-WDR62_2nd 0.56 47.0 3.11e-01 90.3% 30.3%
3508989 2484.1.1.230 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › PF27073 0.55 36.0 3.15e-01 100.0% 43.9%
5794 295.1.1.7 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › MRP 0.55 44.0 3.84e-01 85.4% 70.8%
4030216 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.55 44.0 3.10e-01 86.4% 81.9%
3445272 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.55 49.0 3.38e-01 99.0% 97.2%
3739945 5.1.4.164 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_VPS8 0.54 44.0 3.00e-01 87.4% 50.7%
4022336 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.54 44.0 2.97e-01 88.3% 50.0%
5011826 5.1.4.24 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › SBP56 0.54 47.0 3.10e-01 97.1% 89.1%
3867932 5.1.4.464 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, ANAPC4_WD40, WD40_MABP1-WDR62_2nd 0.54 48.0 3.15e-01 96.1% 67.5%
3583675 5.1.4.321 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PF30361 0.54 44.0 3.05e-01 88.3% 50.3%
3228525 241.15.1.0 ↗ a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain 0.53 43.0 4.24e-01 99.0% 80.9%
3981710 2004.1.1.417 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran, AAA_21 0.53 39.0 2.90e-01 75.7% 100.0%
5000550 5.1.4.43 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › FG-GAP_3 0.53 44.0 3.11e-01 91.3% 53.5%
4375914 5.1.4.23 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › T4P_PilY1 0.53 46.0 2.81e-01 95.1% 35.6%
3932473 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.53 44.0 2.96e-01 90.3% 28.7%
4029821 5.1.10.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 12-bladed 0.53 43.0 3.34e-01 88.3% 61.3%
3484453 5.1.4.13 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › FG-GAP 0.53 48.0 3.07e-01 100.0% 98.1%
3410497 5.1.4.164 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_VPS8 0.52 43.0 2.87e-01 90.3% 30.0%
3676177 5.1.5.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.52 46.0 3.37e-01 99.0% 98.9%
3611395 241.15.1.0 ↗ a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain 0.52 46.0 3.97e-01 99.0% 80.0%
3630390 5.1.4.271 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, PF30361 0.51 44.0 3.02e-01 94.2% 89.7%
3892544 5.1.3.6 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1 0.51 44.0 3.18e-01 95.1% 94.8%
3827726 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.51 44.0 3.17e-01 94.2% 67.2%
D2 high residues 153-241
PDB
Domain cluster: representative
CATH (14)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1sf9A02 2.30.30.340 Mainly Beta › Roll › SH3 type barrels. › Hypothetical protein YfhH like domains 0.63 37.0 4.50e-01 85.4% 94.4%
2xzmW01 3.10.290.10 Alpha Beta › Roll › Structural Genomics Hypothetical 15.5 Kd Protein In mrcA-pckA Intergenic Region; Chain A › RNA-binding S4 domain 0.62 46.0 4.17e-01 77.5% 86.4%
2gu3A02 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.61 32.0 3.76e-01 91.0% 73.0%
3ednA01 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.60 42.0 3.72e-01 74.2% 93.3%
3e1sA04 2.30.30.940 Mainly Beta › Roll › SH3 type barrels. › 0.60 42.0 4.63e-01 94.4% 94.2%
2x4jA01 2.30.30.600 Mainly Beta › Roll › SH3 type barrels. › 0.58 45.0 4.31e-01 83.1% 98.0%
1v5rA00 3.30.920.20 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Gas2-like domain 0.56 40.0 3.93e-01 94.4% 70.1%
4x9cD00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.55 33.0 3.84e-01 88.8% 90.0%
2gfaB01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.54 34.0 3.94e-01 84.3% 91.9%
3j7yD02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.52 42.0 4.42e-01 87.6% 95.1%
7jl1B01 2.60.120.920 Mainly Beta › Sandwich › Jelly Rolls › SPRY domain 0.52 36.0 3.08e-01 71.9% 76.2%
3d2lA02 2.20.25.110 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › S-adenosyl-L-methionine-dependent methyltransferases 0.51 35.0 3.99e-01 82.0% 98.4%
2aj2A01 3.40.1740.10 Alpha Beta › 3-Layer(aba) Sandwich › VC0467-like › VC0467-like 0.51 34.0 3.34e-01 87.6% 62.9%
4kg0A01 2.60.120.920 Mainly Beta › Sandwich › Jelly Rolls › SPRY domain 0.50 38.0 3.33e-01 85.4% 96.1%
ECOD (20)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3398908 391.1.2.0 ↗ few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related 0.69 35.0 3.92e-01 77.5% 61.4%
4550511 4.1.1.175 ↗ beta barrels › SH3 › SH3 › SH3 › MSSS 0.66 34.0 4.60e-01 83.1% 100.0%
4963446 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 43.0 4.90e-01 97.8% 96.9%
4581503 391.1.2.3 ↗ few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related › SVWC 0.63 33.0 3.47e-01 77.5% 55.0%
4236690 391.1.2.0 ↗ few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related 0.63 33.0 3.55e-01 77.5% 59.5%
5030490 221.1.2.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif 0.61 44.0 4.14e-01 76.4% 90.0%
4627769 221.1.2.5 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › S4 0.60 44.0 4.43e-01 77.5% 86.7%
4955635 375.1.1.63 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › LysW-like_globular 0.59 34.0 3.98e-01 71.9% 79.7%
4179500 221.1.2.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif 0.59 44.0 4.10e-01 78.7% 91.8%
4889700 221.1.2.6 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › S4,RS4NT 0.59 45.0 4.11e-01 80.9% 84.6%
3399989 239.3.1.1 ↗ beta barrels › Ribosomal protein L25-like › FAS1 domain › FAS1 domain › Fasciclin 0.55 40.0 3.48e-01 77.5% 95.7%
3975056 241.13.1.0 ↗ a+b two layers › Type III secretory system chaperone-like › N-terminal domain of secreted effector protein sifA › N-terminal domain of secreted effector protein sifA 0.55 38.0 3.40e-01 73.0% 77.7%
4946183 243.6.1.12 ↗ a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › PUA 0.54 32.0 3.49e-01 82.0% 70.7%
3242109 5.1.4.172 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_CAF1B_HIR1 0.53 42.0 2.59e-01 87.6% 30.0%
4991056 375.1.1.63 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › LysW-like_globular 0.53 29.0 3.58e-01 70.8% 87.3%
3452325 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.52 40.0 3.16e-01 84.3% 78.3%
2772566 4.11.1.3 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Phage_CI_C 0.51 36.0 3.41e-01 75.3% 76.3%
3593477 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.51 46.0 3.83e-01 100.0% 71.4%
3722019 6.1.1.0 ↗ beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil 0.51 43.0 3.75e-01 97.8% 89.0%
3514883 239.3.1.1 ↗ beta barrels › Ribosomal protein L25-like › FAS1 domain › FAS1 domain › Fasciclin 0.51 38.0 3.34e-01 82.0% 96.6%