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SRR1747018_scaffold_15_prodigal-single.1__X__X__00219
Bact-VirSRR1747018_scaffold_15_prodigal-single.1__X__X__00219
Identity
- Kingdom:
- phage
Quality
87.0
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-50
Domain cluster:
representative
CATH (2)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1xdxA01 | 3.30.1140.40 | Alpha Beta › 2-Layer Sandwich › Ribosomal protein S3 C-terminal domain › Tctex-1 | 0.55 | 43.0 | 3.71e-01 | 100.0% | 98.0% |
| 1fcdC01 | 1.10.760.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome Bc1 Complex; Chain D, domain 2 › Cytochrome c-like domain | 0.52 | 39.0 | 3.55e-01 | 90.0% | 96.2% |
ECOD (3)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3804838 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.59 | 42.0 | 3.88e-01 | 88.0% | 56.0% |
| 4969508 | 3697.1.1.1 ↗ | alpha bundles › NQO2 helical bundle domain › NQO2 helical bundle domain › NQO2 helical bundle domain › 2Fe-2S_thioredx | 0.55 | 43.0 | 3.88e-01 | 98.0% | 73.8% |
| 3638344 | 145.1.1.1 ↗ | alpha arrays › F-box domain › F-box domain › F-box domain › F-box | 0.51 | 40.0 | 3.63e-01 | 98.0% | 73.8% |
D2
medium
residues 51-128
Domain cluster:
representative
CATH (7)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2xheA03 | 3.90.830.10 | Alpha Beta › Alpha-Beta Complex › Syntaxin Binding Protein 1; Chain A, domain 2 › Sec1/Munc18 (SM) protein, domain 3a | 0.61 | 42.0 | 3.69e-01 | 71.8% | 57.0% |
| 2qorA01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.57 | 43.0 | 3.70e-01 | 82.1% | 90.8% |
| 1bqbA02 | 1.10.390.10 | Mainly Alpha › Orthogonal Bundle › Neutral Protease; domain 2 › Neutral Protease Domain 2 | 0.55 | 44.0 | 3.68e-01 | 88.5% | 86.1% |
| 5b7cA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.55 | 39.0 | 3.50e-01 | 78.2% | 53.2% |
| 3eu8A00 | 1.50.10.140 | Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › Glycoside hydrolase 144 (GH144) | 0.52 | 44.0 | 2.86e-01 | 97.4% | 81.0% |
| 8befJ01 | 1.20.120.1200 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › NADH-ubiquinone/plastoquinone oxidoreductase chain 6, subunit NuoJ | 0.52 | 38.0 | 3.02e-01 | 78.2% | 44.7% |
| 5jj6B01 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.50 | 38.0 | 3.57e-01 | 82.1% | 83.3% |
ECOD (12)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5030357 | 131.1.1.3 ↗ | alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD | 0.73 | 57.0 | 4.39e-01 | 83.3% | 40.6% |
| 4002996 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.67 | 42.0 | 3.12e-01 | 75.6% | 25.1% |
| 3230591 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.61 | 40.0 | 2.77e-01 | 71.8% | 20.0% |
| 3489329 | 109.4.1.1164 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › zf-MYND | 0.59 | 41.0 | 2.85e-01 | 70.5% | 51.8% |
| 3367159 | 109.4.1.1529 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › eIF3_p135, TPR_12 | 0.58 | 43.0 | 2.55e-01 | 78.2% | 21.8% |
| 3841232 | 101.1.1.76 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Integrase_H2C2 | 0.58 | 39.0 | 3.91e-01 | 85.9% | 67.5% |
| 3927783 | 109.4.1.15 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › VHS | 0.57 | 44.0 | 3.31e-01 | 91.0% | 33.8% |
| 3422289 | 226.1.1.0 ↗ | a+b two layers › POZ domain › POZ domain › POZ domain | 0.56 | 35.0 | 3.09e-01 | 73.1% | 40.8% |
| 3691078 | 109.4.1.194 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_10 | 0.55 | 40.0 | 2.56e-01 | 78.2% | 72.9% |
| 4343255 | 3281.1.1.1 ↗ | alpha complex topology › Sodium/proton antiporter subunits-like › Sodium/proton antiporter subunits-like › NADH-quinone oxidoreductase subunit L (NuoL)-related › Proton_antipo_M | 0.54 | 38.0 | 2.66e-01 | 75.6% | 39.7% |
| 3222611 | 603.1.1.104 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins › 7tm_7 | 0.52 | 39.0 | 2.51e-01 | 79.5% | 32.5% |
| 4947568 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.50 | 34.0 | 2.62e-01 | 70.5% | 91.1% |