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SRR1747018_scaffold_15_prodigal-single.1__X__X__00223
Bact-VirSRR1747018_scaffold_15_prodigal-single.1__X__X__00223
Identity
- Kingdom:
- phage
Quality
89.8
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-111
Domain cluster:
rep: NC_021798.1__YP_008241582.1__Phi17-2_gp087__00087__D38-128
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF14279.13 best | HNH_5 | 35.4 | 1.20e-08 | 48.6% | 85.7% |
| PF01844.30 | HNH | 41.7 | 1.40e-10 | 42.2% | 97.9% |
CATH (7)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1iurA01 | 1.10.287.110 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › DnaJ domain | 0.56 | 33.0 | 4.09e-01 | 99.1% | 100.0% |
| 1dd9A03 | 1.20.50.20 | Mainly Alpha › Up-down Bundle › Pheromone ER-1 › DnaG, RNA polymerase domain, helical bundle | 0.54 | 29.0 | 3.70e-01 | 87.2% | 91.5% |
| 3q1xA01 | 1.10.3130.10 | Mainly Alpha › Orthogonal Bundle › serine acetyltransferase, domain 1 › serine acetyltransferase, domain 1 | 0.54 | 36.0 | 3.35e-01 | 80.7% | 53.2% |
| 3r2cA00 | 1.10.940.10 | Mainly Alpha › Orthogonal Bundle › N-utilizing Substance Protein B Homolog; Chain A › NusB-like | 0.52 | 46.0 | 4.23e-01 | 95.4% | 90.6% |
| 2yxlA01 | 1.10.940.10 | Mainly Alpha › Orthogonal Bundle › N-utilizing Substance Protein B Homolog; Chain A › NusB-like | 0.50 | 44.0 | 3.93e-01 | 95.4% | 80.3% |
| 1tzvA00 | 1.10.940.10 | Mainly Alpha › Orthogonal Bundle › N-utilizing Substance Protein B Homolog; Chain A › NusB-like | 0.50 | 43.0 | 3.95e-01 | 92.7% | 85.1% |
| 6vq6H01 | 1.10.287.3240 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.50 | 32.0 | 2.64e-01 | 97.2% | 34.8% |
ECOD (16)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3952818 | 378.1.1.27 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH_5 | 0.73 | 46.0 | 5.56e-01 | 71.6% | 94.6% |
| 4998487 | 378.1.1.2 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH | 0.71 | 51.0 | 5.42e-01 | 73.4% | 87.4% |
| 4999440 | 378.1.1.27 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH_5 | 0.70 | 51.0 | 5.72e-01 | 75.2% | 98.8% |
| 2991844 | 378.1.1.10 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH_4 | 0.68 | 48.0 | 4.84e-01 | 71.6% | 90.8% |
| 5016552 | 378.1.1.10 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH_4 | 0.68 | 56.0 | 5.67e-01 | 88.1% | 97.3% |
| 3953524 | 378.1.1.23 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › DUF222 | 0.65 | 47.0 | 4.19e-01 | 76.1% | 63.9% |
| 4943720 | 378.1.1.0 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases | 0.64 | 54.0 | 5.11e-01 | 89.0% | 96.8% |
| 4989310 | 378.1.1.27 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH_5 | 0.60 | 49.0 | 4.02e-01 | 85.3% | 72.0% |
| 2550470 | 378.1.1.10 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH_4 | 0.58 | 50.0 | 4.32e-01 | 92.7% | 71.7% |
| 1684075 | 378.1.1.10 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH_4 | 0.58 | 50.0 | 4.31e-01 | 91.7% | 77.2% |
| 4839754 | 378.1.1.2 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH | 0.58 | 50.0 | 4.46e-01 | 93.6% | 78.3% |
| 4187709 | 378.1.1.0 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases | 0.57 | 52.0 | 3.48e-01 | 99.1% | 45.5% |
| 4986026 | 378.1.1.2 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH | 0.55 | 45.0 | 3.77e-01 | 88.1% | 70.8% |
| 4554821 | 101.11.1.0 ↗ | alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 | 0.52 | 30.0 | 3.37e-01 | 97.2% | 73.8% |
| 4922670 | 3820.1.1.6 ↗ | a+b complex topology › CRISPR-associated endonuclease Cas9 C-terminal domain › CRISPR-associated endonuclease Cas9 C-terminal domain › CRISPR-associated endonuclease Cas9 C-terminal domain › Cas9_PI, Cas9_RuvC | 0.51 | 39.0 | 3.41e-01 | 91.7% | 52.1% |
| 3240889 | 188.1.1.1 ↗ | alpha arrays › Nuclear receptor ligand-binding domain › Nuclear receptor ligand-binding domain › Nuclear receptor ligand-binding domain › Hormone_recep | 0.51 | 44.0 | 3.44e-01 | 96.3% | 88.2% |