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SRR1747018_scaffold_15_prodigal-single.1__X__X__00227
Bact-VirSRR1747018_scaffold_15_prodigal-single.1__X__X__00227
Identity
- Kingdom:
- phage
Quality
71.1
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-140
Domain cluster:
representative
CATH (5)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3ub1D02 | 3.10.450.540 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.53 | 35.0 | 3.80e-01 | 82.0% | 78.9% |
| 1tu1A00 | 3.40.1000.10 | Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich | 0.52 | 31.0 | 3.14e-01 | 90.6% | 56.2% |
| 4id2A00 | 2.40.128.510 | Mainly Beta › Beta Barrel › Lipocalin › Protein of unknown function DUF4738 | 0.51 | 36.0 | 3.71e-01 | 95.0% | 75.0% |
| 1v2bB00 | 3.40.1000.10 | Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich | 0.51 | 33.0 | 3.26e-01 | 77.0% | 59.6% |
| 3d4eA02 | 3.30.1450.10 | Alpha Beta › 2-Layer Sandwich › Beta-lactamase Inhibitory Protein; Chain:B, domain 1 › | 0.50 | 26.0 | 3.34e-01 | 71.2% | 88.5% |
ECOD (27)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3686863 | 245.1.1.1 ↗ | a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 › RNase_PH_C | 0.61 | 31.0 | 3.77e-01 | 70.5% | 74.4% |
| 5054817 | 245.1.1.1 ↗ | a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 › RNase_PH_C | 0.60 | 32.0 | 4.07e-01 | 70.5% | 90.7% |
| 3222896 | 245.1.1.0 ↗ | a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 | 0.60 | 31.0 | 4.00e-01 | 70.5% | 86.3% |
| 3907819 | 245.1.1.1 ↗ | a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 › RNase_PH_C | 0.60 | 31.0 | 3.97e-01 | 70.5% | 86.3% |
| 3251163 | 245.1.1.1 ↗ | a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 › RNase_PH_C | 0.60 | 31.0 | 3.79e-01 | 70.5% | 76.7% |
| 4995241 | 245.1.1.1 ↗ | a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 › RNase_PH_C | 0.59 | 31.0 | 3.94e-01 | 70.5% | 86.3% |
| 3399617 | 245.1.1.1 ↗ | a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 › RNase_PH_C | 0.59 | 31.0 | 3.73e-01 | 70.5% | 76.7% |
| 3218175 | 245.1.1.1 ↗ | a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 › RNase_PH_C | 0.59 | 30.0 | 3.77e-01 | 70.5% | 80.0% |
| 4929919 | 243.1.1.0 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like | 0.56 | 33.0 | 3.89e-01 | 73.4% | 84.2% |
| 4166318 | 3222.1.1.1 ↗ | a+b complex topology › Regulatory domain of isocitrate dehydrogenase kinase/phosphatase › Regulatory domain of isocitrate dehydrogenase kinase/phosphatase › Regulatory domain of isocitrate dehydrogenase kinase/phosphatase › AceK_regulatory | 0.55 | 48.0 | 3.70e-01 | 94.2% | 44.6% |
| 3739821 | 331.4.1.3 ↗ | a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 › AdenylateSensor | 0.54 | 30.0 | 3.37e-01 | 87.8% | 67.6% |
| 3272363 | 4.1.1.219 ↗ | beta barrels › SH3 › SH3 › SH3 › LSM12_LSM | 0.54 | 26.0 | 3.07e-01 | 70.5% | 63.2% |
| 4216850 | 809.1.1.1 ↗ | a+b two layers › BLIP-like › beta-lactamase-inhibitor protein, BLIP › beta-lactamase-inhibitor protein, BLIP › SmpA_OmlA | 0.54 | 28.0 | 3.46e-01 | 73.4% | 80.0% |
| 3288112 | 243.1.1.69 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › DUF6459 | 0.54 | 34.0 | 3.75e-01 | 74.8% | 79.8% |
| 4119121 | 243.1.1.34 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › YchJ_M-like | 0.54 | 32.0 | 3.72e-01 | 74.1% | 82.8% |
| 3969497 | 3222.1.1.0 ↗ | a+b complex topology › Regulatory domain of isocitrate dehydrogenase kinase/phosphatase › Regulatory domain of isocitrate dehydrogenase kinase/phosphatase › Regulatory domain of isocitrate dehydrogenase kinase/phosphatase | 0.53 | 49.0 | 3.75e-01 | 100.0% | 46.9% |
| 4356238 | 3222.1.1.1 ↗ | a+b complex topology › Regulatory domain of isocitrate dehydrogenase kinase/phosphatase › Regulatory domain of isocitrate dehydrogenase kinase/phosphatase › Regulatory domain of isocitrate dehydrogenase kinase/phosphatase › AceK_regulatory | 0.53 | 48.0 | 3.72e-01 | 100.0% | 46.6% |
| 3417568 | 245.1.1.0 ↗ | a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 | 0.52 | 32.0 | 3.66e-01 | 70.5% | 82.5% |
| 3924939 | 4210.1.1.1 ↗ | a+b two layers › WGR domain › WGR domain › WGR domain › WGR | 0.52 | 35.0 | 3.80e-01 | 81.3% | 82.6% |
| 3312688 | 245.1.1.1 ↗ | a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 › RNase_PH_C | 0.52 | 32.0 | 3.64e-01 | 70.5% | 81.9% |
| 3965867 | 295.1.1.16 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › LPD3 | 0.51 | 43.0 | 3.94e-01 | 90.6% | 87.0% |
| 4974736 | 881.1.1.0 ↗ | a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like | 0.51 | 31.0 | 3.10e-01 | 90.6% | 55.2% |
| 3832766 | 245.1.1.0 ↗ | a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 | 0.51 | 32.0 | 3.62e-01 | 70.5% | 82.7% |
| 1948932 | 243.1.1.18 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 | 0.51 | 33.0 | 3.67e-01 | 75.5% | 84.0% |
| 3328088 | 243.5.1.1 ↗ | a+b two layers › Cystatin-like › Amine oxidase N-terminal region › Amine oxidase N-terminal region › Cu_amine_oxidN2 | 0.50 | 33.0 | 3.76e-01 | 89.9% | 91.0% |
| 4983588 | 295.1.1.0 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain | 0.50 | 28.0 | 3.52e-01 | 89.2% | 97.3% |
| 1949057 | 243.1.1.18 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 | 0.50 | 33.0 | 3.49e-01 | 74.1% | 74.6% |
D2
high
residues 350-469
Domain cluster:
rep: DQ003642.1__AAY53255.1__X__00021__D11-125
CATH (7)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2nvnA00 | 2.30.31.10 | Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A | 0.56 | 43.0 | 4.36e-01 | 81.7% | 95.8% |
| 2xepB01 | 3.10.450.280 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.55 | 33.0 | 3.39e-01 | 97.5% | 61.4% |
| 4pzaB00 | 3.40.50.1240 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphoglycerate mutase-like | 0.54 | 39.0 | 3.25e-01 | 75.8% | 94.5% |
| 4ebgA00 | 3.10.450.560 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.53 | 34.0 | 3.75e-01 | 92.5% | 80.4% |
| 1t90A01 | 3.40.605.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 | 0.53 | 40.0 | 3.07e-01 | 79.2% | 83.6% |
| 4dkkA02 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.53 | 32.0 | 3.80e-01 | 89.2% | 95.9% |
| 3iuzA00 | 3.10.180.50 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › | 0.51 | 39.0 | 2.84e-01 | 80.0% | 86.6% |
ECOD (9)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4938029 | 4312.1.1.0 ↗ | a+b two layers › RelE-like › RelE-like › RelE-like | 0.63 | 45.0 | 4.95e-01 | 92.5% | 91.8% |
| 4348187 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.56 | 31.0 | 3.57e-01 | 81.7% | 72.9% |
| 3437773 | 243.3.1.19 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › DUF3615 | 0.56 | 38.0 | 3.95e-01 | 94.2% | 73.0% |
| 3969970 | 243.3.1.3 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › PepSY | 0.54 | 27.0 | 3.19e-01 | 80.8% | 70.7% |
| 3711065 | 330.1.1.22 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › PF26536 | 0.53 | 35.0 | 3.60e-01 | 85.8% | 69.6% |
| 3427022 | 243.3.1.19 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › DUF3615 | 0.52 | 30.0 | 3.26e-01 | 82.5% | 67.0% |
| 4974435 | 243.1.1.0 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like | 0.52 | 35.0 | 3.92e-01 | 92.5% | 88.4% |
| 3765735 | 223.2.1.20 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › Fuz_longin_1 | 0.52 | 40.0 | 3.59e-01 | 94.2% | 56.1% |
| 3983197 | 4312.1.1.12 ↗ | a+b two layers › RelE-like › RelE-like › RelE-like › MuF_C | 0.50 | 44.0 | 4.11e-01 | 97.5% | 78.7% |
D3
high
residues 483-614
Domain cluster:
rep: DQ003642.1__AAY53255.1__X__00021__D140-251
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF12873.13 best | DUF3825 | 79.0 | 6.00e-22 | 100.0% | 52.1% |
CATH (9)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3u97A00 | 3.10.450.530 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Ribonuclease toxin, BrnT, of type II toxin-antitoxin system | 0.69 | 41.0 | 5.06e-01 | 80.3% | 98.7% |
| 4fbdA01 | 3.30.2310.50 | Alpha Beta › 2-Layer Sandwich › YaeB-like fold › Protein of unknown function (DUF3228), domain 1 | 0.57 | 46.0 | 4.93e-01 | 89.4% | 100.0% |
| 2i87B02 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.54 | 39.0 | 3.73e-01 | 76.5% | 84.3% |
| 3d2fA04 | 3.90.640.10 | Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › ATPase, substrate binding domain, subdomain 4 | 0.54 | 34.0 | 4.04e-01 | 74.2% | 98.8% |
| 6eugA00 | 2.115.10.20 | Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 | 0.53 | 47.0 | 3.54e-01 | 99.2% | 65.4% |
| 6fucA02 | 3.90.1200.10 | Alpha Beta › Alpha-Beta Complex › Aminoglycoside 3'-phosphotransferase; Chain: A, domain 2 › Aminoglycoside phosphotransferase (APH), C-terminal lobe | 0.53 | 42.0 | 3.78e-01 | 84.8% | 82.6% |
| 2bmoB00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.52 | 42.0 | 3.75e-01 | 87.9% | 78.9% |
| 1e4eB01 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.52 | 38.0 | 3.61e-01 | 76.5% | 96.2% |
| 3a58A01 | 2.30.29.90 | Mainly Beta › Roll › PH-domain like › | 0.51 | 46.0 | 4.23e-01 | 100.0% | 81.0% |
ECOD (16)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3956000 | 4312.1.1.0 ↗ | a+b two layers › RelE-like › RelE-like › RelE-like | 0.72 | 39.0 | 5.07e-01 | 77.3% | 97.1% |
| 4993341 | 4312.1.1.0 ↗ | a+b two layers › RelE-like › RelE-like › RelE-like | 0.72 | 39.0 | 5.12e-01 | 78.0% | 100.0% |
| 4968133 | 4312.1.1.1 ↗ | a+b two layers › RelE-like › RelE-like › RelE-like › BrnT_toxin | 0.67 | 46.0 | 5.35e-01 | 95.5% | 100.0% |
| 4937283 | 4312.1.1.3 ↗ | a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin | 0.65 | 45.0 | 5.17e-01 | 84.8% | 98.9% |
| 3948814 | 4312.1.1.4 ↗ | a+b two layers › RelE-like › RelE-like › RelE-like › Gp49 | 0.64 | 42.0 | 4.68e-01 | 84.8% | 84.8% |
| 3166135 | 4312.1.1.4 ↗ | a+b two layers › RelE-like › RelE-like › RelE-like › Gp49 | 0.63 | 41.0 | 4.73e-01 | 85.6% | 91.6% |
| 4968686 | 4312.1.1.15 ↗ | a+b two layers › RelE-like › RelE-like › RelE-like › DUF4258 | 0.63 | 46.0 | 5.11e-01 | 89.4% | 99.0% |
| 3944846 | 4312.1.1.4 ↗ | a+b two layers › RelE-like › RelE-like › RelE-like › Gp49 | 0.62 | 45.0 | 4.77e-01 | 84.8% | 86.1% |
| 3940934 | 4023.1.1.0 ↗ | a+b two layers › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core | 0.60 | 32.0 | 3.66e-01 | 84.1% | 69.5% |
| 4197835 | 2.1.1.73 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RsgA_N | 0.60 | 25.0 | 3.32e-01 | 86.4% | 70.8% |
| 3282412 | 4312.1.1.4 ↗ | a+b two layers › RelE-like › RelE-like › RelE-like › Gp49 | 0.59 | 43.0 | 4.47e-01 | 86.4% | 82.1% |
| 4615629 | 4.1.1.449 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF1292 | 0.57 | 36.0 | 4.22e-01 | 93.2% | 98.8% |
| 4584262 | 3222.1.1.1 ↗ | a+b complex topology › Regulatory domain of isocitrate dehydrogenase kinase/phosphatase › Regulatory domain of isocitrate dehydrogenase kinase/phosphatase › Regulatory domain of isocitrate dehydrogenase kinase/phosphatase › AceK_regulatory | 0.53 | 48.0 | 3.69e-01 | 100.0% | 79.0% |
| 4504902 | 3222.1.1.1 ↗ | a+b complex topology › Regulatory domain of isocitrate dehydrogenase kinase/phosphatase › Regulatory domain of isocitrate dehydrogenase kinase/phosphatase › Regulatory domain of isocitrate dehydrogenase kinase/phosphatase › AceK_regulatory | 0.53 | 47.0 | 3.59e-01 | 99.2% | 80.6% |
| 3807581 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.53 | 35.0 | 3.94e-01 | 85.6% | 89.9% |
| 3897432 | 101.1.2.24 ↗ | alpha arrays › HTH › HTH › winged helix domain › MAGE | 0.52 | 32.0 | 3.76e-01 | 78.0% | 90.0% |