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SRR1747018_scaffold_15_prodigal-single.1__X__X__00258
Bact-VirSRR1747018_scaffold_15_prodigal-single.1__X__X__00258
Identity
- Kingdom:
- phage
Quality
53.8
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 189-322
D2
high
residues 431-560
D3
medium
residues 29-105
Domain cluster:
rep: SRR1747065_scaffold_9_prodigal-single.1__X__X__00160__D6-82
CATH (21)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3itjA02 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.77 | 39.0 | 3.26e-01 | 76.6% | 30.2% |
| 2rghA01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.74 | 47.0 | 3.23e-01 | 88.3% | 20.1% |
| 1fl2A02 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.74 | 39.0 | 3.25e-01 | 77.9% | 31.5% |
| 2eczA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.72 | 37.0 | 3.92e-01 | 70.1% | 54.3% |
| 1ybyA02 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.72 | 38.0 | 4.12e-01 | 79.2% | 60.9% |
| 1bkbA02 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.71 | 39.0 | 4.21e-01 | 79.2% | 63.1% |
| 3a5zD02 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.68 | 36.0 | 3.92e-01 | 79.2% | 60.9% |
| 7u32F02 | 2.30.30.10 | Mainly Beta › Roll › SH3 type barrels. › Integrase, C-terminal domain superfamily, retroviral | 0.67 | 32.0 | 3.86e-01 | 74.0% | 66.7% |
| 1lckA01 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.63 | 32.0 | 3.51e-01 | 75.3% | 57.6% |
| 6rwcA02 | 2.20.25.590 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.62 | 28.0 | 3.71e-01 | 87.0% | 82.1% |
| 1x9mA01 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.59 | 50.0 | 3.69e-01 | 97.4% | 74.3% |
| 2im9A02 | 2.30.260.10 | Mainly Beta › Roll › putative xylanase like fold › putative xylanase like domain | 0.59 | 39.0 | 3.17e-01 | 84.4% | 34.7% |
| 4c5eC02 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.59 | 41.0 | 3.83e-01 | 72.7% | 67.7% |
| 2wfbA00 | 3.30.420.130 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Dinitrogenase iron-molybdenum cofactor biosynthesis domain | 0.58 | 46.0 | 4.08e-01 | 88.3% | 79.2% |
| 1hczA02 | 2.40.50.100 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain | 0.58 | 33.0 | 3.73e-01 | 79.2% | 72.9% |
| 1y0nA00 | 1.10.10.610 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › YehU-like | 0.55 | 40.0 | 4.19e-01 | 76.6% | 98.6% |
| 4m7xA01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.55 | 47.0 | 4.55e-01 | 100.0% | 86.8% |
| 2nmlA00 | 3.30.2260.10 | Alpha Beta › 2-Layer Sandwich › ERH-like fold › Enhancer of rudimentary | 0.53 | 36.0 | 3.35e-01 | 70.1% | 96.0% |
| 3lo7A01 | 3.90.1310.10 | Alpha Beta › Alpha-Beta Complex › Penicillin-binding protein 2a (Domain 2) › Penicillin-binding protein 2a (Domain 2) | 0.53 | 40.0 | 3.57e-01 | 83.1% | 98.3% |
| 1st8A01 | 2.115.10.20 | Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 | 0.52 | 42.0 | 2.91e-01 | 97.4% | 97.3% |
| 4frfA00 | 3.30.470.160 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › Inositol polyphosphate kinase | 0.51 | 39.0 | 2.89e-01 | 83.1% | 65.4% |
ECOD (38)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4994957 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.78 | 40.0 | 4.71e-01 | 77.9% | 70.9% |
| 4167626 | 2.1.1.10 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › EFP | 0.76 | 39.0 | 4.29e-01 | 79.2% | 60.0% |
| 5072502 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.76 | 38.0 | 4.32e-01 | 79.2% | 63.8% |
| 4066623 | 2.1.1.10 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › EFP | 0.76 | 39.0 | 4.40e-01 | 79.2% | 65.0% |
| 4100221 | 2.1.1.10 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › EFP | 0.75 | 39.0 | 4.23e-01 | 79.2% | 60.0% |
| 4039724 | 2.1.1.10 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › EFP | 0.75 | 39.0 | 4.24e-01 | 79.2% | 60.0% |
| 4429356 | 2.1.1.10 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › EFP | 0.75 | 39.0 | 4.25e-01 | 77.9% | 60.0% |
| 4252940 | 2.1.1.10 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › EFP | 0.75 | 39.0 | 4.24e-01 | 79.2% | 60.0% |
| 4059146 | 2.1.1.10 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › EFP | 0.75 | 39.0 | 4.22e-01 | 79.2% | 60.0% |
| 4051852 | 2.1.1.10 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › EFP | 0.75 | 39.0 | 4.21e-01 | 79.2% | 60.0% |
| 4678731 | 2.1.1.10 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › EFP | 0.74 | 38.0 | 4.18e-01 | 79.2% | 60.0% |
| 4184764 | 2.1.1.10 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › EFP | 0.74 | 38.0 | 4.16e-01 | 79.2% | 60.0% |
| 4425795 | 2.1.1.10 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › EFP | 0.73 | 38.0 | 4.13e-01 | 77.9% | 60.0% |
| 3620947 | 4.8.1.0 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like | 0.72 | 48.0 | 5.59e-01 | 80.5% | 96.4% |
| 4043601 | 2.1.1.10 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › EFP | 0.72 | 38.0 | 4.18e-01 | 79.2% | 61.5% |
| 4176687 | 2.1.1.10 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › EFP | 0.72 | 37.0 | 4.05e-01 | 79.2% | 60.0% |
| 5058926 | 4.6.1.0 ↗ | beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain | 0.71 | 41.0 | 4.19e-01 | 75.3% | 58.7% |
| 4032291 | 2.1.1.10 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › EFP | 0.71 | 38.0 | 4.11e-01 | 79.2% | 61.5% |
| 3948516 | 2.1.1.10 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › EFP | 0.71 | 38.0 | 4.10e-01 | 77.9% | 61.5% |
| 3317544 | 2.1.1.10 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › EFP | 0.71 | 38.0 | 4.10e-01 | 79.2% | 61.5% |
| 5070745 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.71 | 37.0 | 4.56e-01 | 77.9% | 84.4% |
| 3460106 | 244.1.1.4 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C › DAO | 0.70 | 47.0 | 3.30e-01 | 88.3% | 23.6% |
| 4579534 | 2.1.1.10 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › EFP | 0.70 | 37.0 | 4.06e-01 | 79.2% | 61.5% |
| 3858967 | 391.1.1.0 ↗ | few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module | 0.69 | 30.0 | 4.21e-01 | 70.1% | 100.0% |
| 4582456 | 2.1.1.10 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › EFP | 0.68 | 37.0 | 3.86e-01 | 79.2% | 57.1% |
| 4952888 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.68 | 35.0 | 4.01e-01 | 79.2% | 67.3% |
| 4930180 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.68 | 34.0 | 3.90e-01 | 87.0% | 65.5% |
| 5058672 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.66 | 35.0 | 3.91e-01 | 79.2% | 66.1% |
| 4992873 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.65 | 33.0 | 3.79e-01 | 79.2% | 63.8% |
| 4962623 | 375.1.1.339 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › DUF7560 | 0.63 | 37.0 | 4.67e-01 | 70.1% | 100.0% |
| 4991183 | 2003.1.2.300 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › GGR_cat | 0.63 | 40.0 | 2.51e-01 | 84.4% | 11.3% |
| 3898170 | 4.1.1.92 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_9 | 0.61 | 31.0 | 3.18e-01 | 75.3% | 48.0% |
| 3763497 | 4.1.1.54 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_2 | 0.60 | 32.0 | 3.24e-01 | 75.3% | 49.3% |
| 5069567 | 243.6.1.0 ↗ | a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain | 0.58 | 30.0 | 3.16e-01 | 90.9% | 52.9% |
| 3501741 | 4056.1.1.0 ↗ | beta barrels › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Barrel domain in upper collar protein | 0.57 | 35.0 | 3.88e-01 | 83.1% | 78.3% |
| 2455432 | 2484.1.1.68 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_H_2 | 0.57 | 49.0 | 3.69e-01 | 100.0% | 82.7% |
| 3512515 | 247.1.1.45 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B, RMMBL, Lactamase_B_2 | 0.55 | 46.0 | 3.13e-01 | 97.4% | 81.2% |
| 5051552 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.51 | 35.0 | 3.23e-01 | 71.4% | 81.0% |
D4
medium
residues 110-178
Domain cluster:
representative
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4oonA03 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.54 | 39.0 | 3.46e-01 | 87.0% | 51.9% |
| 3d6wB02 | 2.20.25.10 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.53 | 30.0 | 3.52e-01 | 78.3% | 94.9% |
| 1goiA02 | 3.10.50.10 | Alpha Beta › Roll › Chitinase A; domain 3 › | 0.52 | 39.0 | 3.69e-01 | 85.5% | 90.0% |
ECOD (3)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3786957 | 4291.1.1.1 ↗ | beta barrels › Oxysterol-binding protein › Oxysterol-binding protein › Oxysterol-binding protein › Oxysterol_BP | 0.55 | 34.0 | 2.08e-01 | 84.1% | 9.7% |
| 3193544 | 221.2.1.1 ↗ | a+b two layers › beta-Grasp › IF3-N › IF3-N › IF3_N | 0.51 | 34.0 | 3.40e-01 | 92.8% | 65.8% |
| 4996738 | 2484.1.1.291 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › MutS_V | 0.50 | 42.0 | 2.47e-01 | 100.0% | 12.4% |