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SRR1747018_scaffold_15_prodigal-single.1__X__X__00272

Bact-Vir

SRR1747018_scaffold_15_prodigal-single.1__X__X__00272

Identity

Kingdom:
phage

Quality

86.4 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 10-72
PDB
Domain cluster: representative
CATH (47)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1ku3A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.77 56.0 5.74e-01 81.0% 78.7%
5f64A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.75 63.0 5.94e-01 93.7% 76.0%
3t0yA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.74 49.0 5.05e-01 79.4% 71.7%
4nqwA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.74 53.0 5.34e-01 87.3% 73.4%
2o8xA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.74 50.0 5.10e-01 81.0% 72.1%
6uglB02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 55.0 5.74e-01 87.3% 87.9%
3vfzB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 51.0 5.20e-01 85.7% 74.6%
1rr7A02 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.71 44.0 4.99e-01 74.6% 83.3%
1aisB02 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.71 56.0 4.83e-01 88.9% 56.4%
4gvpA01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.70 57.0 3.94e-01 93.7% 27.7%
6v7xB02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 55.0 5.83e-01 92.1% 100.0%
3k9tA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 49.0 4.81e-01 90.5% 71.2%
3p7nA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 56.0 5.34e-01 93.7% 79.2%
2m8gX00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.67 46.0 4.48e-01 76.2% 64.3%
1l3lA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 55.0 5.52e-01 93.7% 88.9%
5fgmA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 51.0 5.05e-01 92.1% 76.9%
3hugA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 52.0 4.78e-01 92.1% 65.0%
1a04A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 54.0 5.02e-01 93.7% 71.2%
6cc0A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 54.0 5.27e-01 92.1% 82.9%
1mkmB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 54.0 5.16e-01 93.7% 85.5%
1on2A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 55.0 5.28e-01 93.7% 90.3%
7dvrA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 51.0 4.04e-01 92.1% 48.9%
1c0wA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 53.0 5.10e-01 98.4% 95.9%
2x4hA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 52.0 4.16e-01 93.7% 48.8%
1s7oB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 53.0 4.41e-01 92.1% 81.9%
1lvaA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 51.0 5.18e-01 92.1% 96.8%
3cuqB03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 48.0 4.77e-01 90.5% 95.7%
1u8bA02 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.61 51.0 5.23e-01 95.2% 98.4%
1xd7A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 52.0 4.23e-01 98.4% 52.6%
3ecoB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 51.0 4.02e-01 95.2% 48.1%
7pzaA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 52.0 4.71e-01 100.0% 88.4%
4wcgA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 49.0 5.01e-01 92.1% 96.7%
4ijaA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 49.0 4.91e-01 92.1% 98.4%
3mklA00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.58 48.0 4.15e-01 95.2% 82.7%
4kmfA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 48.0 4.85e-01 92.1% 98.4%
5fglA00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.58 48.0 3.43e-01 93.7% 60.0%
1jhgA00 1.10.1270.10 Mainly Alpha › Orthogonal Bundle › Trp Operon Repressor; Chain A › TrpR-like 0.57 46.0 4.03e-01 98.4% 57.4%
2gloA00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.57 46.0 4.72e-01 100.0% 96.6%
2ao9I01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.56 41.0 3.83e-01 93.7% 59.8%
1z05A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 47.0 4.56e-01 95.2% 93.1%
1fi2A00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.55 44.0 3.05e-01 85.7% 57.2%
3keoA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 48.0 4.64e-01 98.4% 90.3%
8dtqA01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.54 45.0 4.09e-01 88.9% 81.7%
2d6yA00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.54 46.0 3.36e-01 98.4% 61.3%
2fjrA01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.54 43.0 4.04e-01 84.1% 82.9%
1di1A00 1.10.600.10 Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase 0.54 38.0 2.53e-01 77.8% 34.5%
5dvwA00 1.20.120.1160 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.51 37.0 3.10e-01 93.7% 40.2%
ECOD (53)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5027602 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.87 61.0 6.50e-01 84.1% 83.6%
4994602 101.1.4.3 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 0.79 48.0 4.95e-01 71.4% 65.0%
4165729 101.1.1.31 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4 0.79 57.0 4.12e-01 81.0% 29.1%
4972037 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.79 59.0 6.58e-01 82.5% 98.0%
3603081 101.1.2.40 ↗ alpha arrays › HTH › HTH › winged helix domain › CPSase_L_D3 0.78 63.0 5.86e-01 84.1% 88.0%
5027753 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.77 50.0 5.82e-01 79.4% 93.3%
4975730 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.77 59.0 5.73e-01 93.7% 74.3%
4258677 142.1.1.0 ↗ alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors 0.75 57.0 3.79e-01 84.1% 22.2%
4097443 101.1.1.30 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r3,Sigma70_r4 0.75 53.0 3.79e-01 81.0% 27.1%
3946805 101.1.1.31 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4 0.75 54.0 5.13e-01 81.0% 64.0%
None — 0.75 56.0 3.78e-01 84.1% 22.7%
4940480 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.75 54.0 5.78e-01 82.5% 87.3%
4026959 101.1.1.29 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r3 0.74 55.0 3.40e-01 81.0% 14.8%
4585396 101.1.1.31 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4 0.74 51.0 3.78e-01 81.0% 28.7%
4511316 101.1.1.31 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4 0.74 57.0 4.28e-01 85.7% 36.7%
3693312 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.72 47.0 4.85e-01 74.6% 70.0%
4148139 101.1.1.30 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r3,Sigma70_r4 0.72 56.0 4.12e-01 92.1% 33.5%
4966030 101.1.1.42 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.70 50.0 5.27e-01 87.3% 81.0%
4947168 101.1.10.0 ↗ alpha arrays › HTH › HTH › Cyclin-like 0.70 53.0 4.63e-01 79.4% 93.3%
5062343 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.69 47.0 5.21e-01 81.0% 90.0%
3303765 101.1.1.30 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r3,Sigma70_r4 0.69 58.0 4.21e-01 93.7% 35.6%
4970108 101.1.2.136 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_20 0.68 46.0 5.09e-01 79.4% 88.0%
3644937 101.1.1.30 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r3,Sigma70_r4 0.68 59.0 4.26e-01 92.1% 37.5%
3347305 101.1.1.30 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r3,Sigma70_r4 0.68 58.0 4.20e-01 92.1% 36.4%
4084282 101.1.1.31 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4 0.67 56.0 5.07e-01 92.1% 67.1%
3297365 101.1.1.30 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r3,Sigma70_r4 0.67 58.0 4.13e-01 92.1% 35.5%
3668669 101.1.1.31 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4 0.67 58.0 5.22e-01 93.7% 69.4%
3339569 101.1.1.31 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4 0.66 56.0 4.98e-01 92.1% 67.4%
4339699 101.1.1.29 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r3 0.66 47.0 5.07e-01 74.6% 87.3%
3285621 101.1.3.1 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.66 53.0 5.01e-01 93.7% 92.5%
4955603 101.1.1.540 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_10 0.66 49.0 4.88e-01 82.5% 76.9%
3027028 101.1.1.31 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4 0.66 57.0 4.67e-01 93.7% 56.9%
3329805 101.1.1.30 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r3,Sigma70_r4 0.65 56.0 4.13e-01 93.7% 36.9%
4674817 101.1.1.31 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4 0.65 49.0 3.54e-01 81.0% 29.7%
4979789 101.1.2.78 ↗ alpha arrays › HTH › HTH › winged helix domain › AlkZ-like 0.64 45.0 4.83e-01 95.2% 85.5%
5061230 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.64 53.0 4.86e-01 93.7% 81.2%
139949 101.1.2.21 ↗ alpha arrays › HTH › HTH › winged helix domain › Fe_dep_repress 0.64 51.0 5.24e-01 87.3% 96.7%
4979401 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.64 50.0 5.33e-01 88.9% 96.4%
5034431 101.1.2.21 ↗ alpha arrays › HTH › HTH › winged helix domain › Fe_dep_repress 0.63 53.0 4.22e-01 98.4% 49.3%
4471924 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.63 49.0 5.18e-01 87.3% 96.4%
5070991 101.1.6.0 ↗ alpha arrays › HTH › HTH › TrpR 0.63 49.0 4.79e-01 84.1% 91.4%
3276386 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.62 47.0 4.62e-01 84.1% 94.3%
5031372 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.61 44.0 4.69e-01 81.0% 87.3%
3587173 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.61 53.0 4.65e-01 98.4% 83.2%
4503081 101.1.2.57 ↗ alpha arrays › HTH › HTH › winged helix domain › EAP30 0.61 49.0 4.81e-01 93.7% 97.1%
4966784 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.60 44.0 4.50e-01 90.5% 85.0%
4529868 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.60 51.0 4.47e-01 95.2% 96.8%
4131872 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.59 46.0 4.84e-01 87.3% 96.4%
4010677 101.1.1.58 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.59 46.0 4.08e-01 90.5% 84.0%
4965902 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.58 49.0 4.17e-01 98.4% 56.2%
3285795 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.57 44.0 4.70e-01 85.7% 98.2%
3977556 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.57 45.0 4.76e-01 88.9% 100.0%
3283959 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.56 43.0 3.99e-01 88.9% 66.7%