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SRR1747018_scaffold_15_prodigal-single.1__X__X__00385

Bact-Vir

SRR1747018_scaffold_15_prodigal-single.1__X__X__00385

Identity

Kingdom:
phage

Quality

80.9 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 10-58
PDB
Domain cluster: rep: NC_049340.1__YP_009873778.1__HYO65_gp094__00094__D12-53
D2 medium residues 59-124
PDB
Domain cluster: rep: js4906-25-2-S21_Prophage_curated_prodigal-single.1__X__X__00141__D1-61
CATH (20)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2dk3A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.71 49.0 4.52e-01 72.7% 74.4%
1ssfA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.69 47.0 4.99e-01 71.2% 94.5%
3bb7A01 3.90.70.50 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Streptopain (SpeB) 0.63 44.0 3.31e-01 74.2% 48.9%
2jiiA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.61 54.0 4.54e-01 98.5% 90.9%
4c92G00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.60 41.0 4.03e-01 72.7% 80.0%
4m7dA00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.60 41.0 4.15e-01 72.7% 89.2%
1k90A02 3.90.1760.10 Alpha Beta › Alpha-Beta Complex › Adenylylcyclase toxin fold › Anthrax toxin, edema factor, central domain 0.59 47.0 3.52e-01 95.5% 35.2%
1ospO01 2.40.128.160 Mainly Beta › Beta Barrel › Lipocalin › C1 set domains (antibody constant domain-like) 0.59 46.0 4.02e-01 87.9% 76.2%
1a2pA00 3.10.450.30 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Microbial ribonucleases 0.57 47.0 4.06e-01 100.0% 56.5%
3d0fA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.56 41.0 4.06e-01 80.3% 91.8%
8hpoK01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.54 46.0 2.90e-01 100.0% 37.2%
3udfA03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.54 45.0 3.99e-01 92.4% 91.6%
4oonA03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.54 44.0 3.82e-01 90.9% 88.5%
1pguA02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.54 43.0 2.89e-01 95.5% 36.4%
1xn5A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.54 45.0 3.61e-01 93.9% 64.5%
3dueA00 3.40.1420.30 Alpha Beta › 3-Layer(aba) Sandwich › Inhibitor of vertebrate lysozyme, Ivy › 0.53 44.0 3.70e-01 98.5% 83.5%
3rf9B02 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.53 41.0 2.72e-01 86.4% 35.0%
6m90A02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.53 44.0 2.98e-01 100.0% 43.4%
6eufA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.53 42.0 2.79e-01 90.9% 28.9%
4n9jA02 3.30.1120.130 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.51 35.0 3.07e-01 74.2% 72.0%
ECOD (30)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3222147 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.81 56.0 5.86e-01 71.2% 95.0%
3623890 4.1.1.322 ↗ beta barrels › SH3 › SH3 › SH3 › GPKOW_C 0.81 56.0 5.06e-01 71.2% 67.1%
3810217 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.79 54.0 6.11e-01 71.2% 100.0%
3993250 4.1.1.333 ↗ beta barrels › SH3 › SH3 › SH3 › PF29330 0.78 54.0 5.83e-01 71.2% 90.9%
4024913 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.78 54.0 5.53e-01 72.7% 78.5%
3978624 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.78 55.0 4.36e-01 74.2% 39.2%
3855972 4.1.1.253 ↗ beta barrels › SH3 › SH3 › SH3 › DUF4537 0.77 52.0 5.33e-01 71.2% 80.0%
1263713 4.1.1.102 ↗ beta barrels › SH3 › SH3 › SH3 › Tudor_3 0.74 52.0 5.72e-01 72.7% 98.1%
5022448 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 46.0 4.49e-01 71.2% 90.7%
3254315 4.1.1.38 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L2_C 0.68 60.0 4.46e-01 97.0% 83.7%
4295947 3844.1.1.1 ↗ a+b two layers › hydrogenase expression protein-like › hydrogenase expression protein-like › hydrogenase expression protein › HupH_C 0.66 47.0 3.95e-01 74.2% 46.4%
3595917 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 58.0 4.36e-01 97.0% 87.1%
3523979 604.12.1.118 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › DUF4537 0.66 49.0 5.16e-01 80.3% 98.3%
3263031 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 46.0 4.63e-01 74.2% 75.4%
3465186 5.1.8.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › putative conserved lipoprotein NT01CX_1156 0.63 45.0 3.63e-01 75.8% 75.4%
5059099 241.2.1.0 ↗ a+b two layers › Type III secretory system chaperone-like › Frataxin-like › Frataxin-like 0.63 45.0 4.05e-01 100.0% 55.7%
3638043 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.63 55.0 3.55e-01 95.5% 29.6%
3207383 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.63 55.0 3.50e-01 95.5% 27.3%
5039568 331.3.1.11 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Polyketide_cyc2 0.61 50.0 3.99e-01 89.4% 58.5%
4972712 218.4.1.1 ↗ a+b two layers › Enolase-N/ribosomal protein › Dhaf4260 N-terminal domain › Dhaf4260 N-terminal domain › DUF4213 0.60 42.0 3.53e-01 72.7% 92.2%
3839910 2.1.1.7 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › S1 0.58 44.0 4.48e-01 81.8% 92.1%
3323984 4.1.1.38 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L2_C 0.58 49.0 3.57e-01 93.9% 72.4%
3168996 4.1.1.19 ↗ beta barrels › SH3 › SH3 › SH3 › LSM 0.55 37.0 3.16e-01 72.7% 65.6%
1879626 5.1.4.38 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › ANAPC1 0.54 41.0 2.92e-01 84.8% 43.8%
3823422 5.1.4.255 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › RCC1, RCC1_2, WD40_RLD 0.53 45.0 2.74e-01 100.0% 32.2%
3700775 292.2.1.0 ↗ a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain 0.53 44.0 3.94e-01 97.0% 65.3%
4026544 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.52 42.0 2.76e-01 92.4% 23.9%
5644 809.2.1.1 ↗ a+b two layers › BLIP-like › BT0923-like › BT0923-like › PepSY_like 0.51 40.0 4.32e-01 92.4% 100.0%
3589071 9.1.1.32 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › DUF4828 0.51 41.0 4.01e-01 90.9% 92.0%
68497 809.2.1.1 ↗ a+b two layers › BLIP-like › BT0923-like › BT0923-like › PepSY_like 0.51 39.0 4.19e-01 90.9% 100.0%
D3 medium residues 278-344
PDB
Domain cluster: rep: SRR1747018_scaffold_15_prodigal-single.1__X__X__00388__D9-84
D4 medium residues 345-395
PDB
Domain cluster: rep: SRR1747018_scaffold_15_prodigal-single.1__X__X__00387__D152-198