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SRR1747018_scaffold_15_prodigal-single.1__X__X__00387
Bact-VirSRR1747018_scaffold_15_prodigal-single.1__X__X__00387
Identity
- Kingdom:
- phage
Quality
77.3
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 152-198
Domain cluster:
representative
CATH (9)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2ivxB02 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.66 | 52.0 | 4.06e-01 | 93.6% | 67.0% |
| 2l3nA00 | 1.10.1050.20 | Mainly Alpha › Orthogonal Bundle › Ribosomal Protein S4 Delta 41; Chain A, domain 1 › | 0.63 | 45.0 | 3.61e-01 | 78.7% | 37.5% |
| 2o71A00 | 1.10.533.10 | Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas | 0.62 | 52.0 | 4.28e-01 | 97.9% | 84.6% |
| 2of5H00 | 1.10.533.10 | Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas | 0.57 | 47.0 | 3.82e-01 | 100.0% | 66.0% |
| 3qitB00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.54 | 41.0 | 2.59e-01 | 87.2% | 16.3% |
| 3bwxA00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.53 | 40.0 | 2.53e-01 | 91.5% | 14.0% |
| 1e7lA02 | 1.10.720.10 | Mainly Alpha › Orthogonal Bundle › Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 › | 0.53 | 36.0 | 3.50e-01 | 80.9% | 61.8% |
| 4annA00 | 1.10.510.10 | Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 | 0.52 | 36.0 | 2.57e-01 | 76.6% | 36.4% |
| 8el7B01 | 1.25.10.10 | Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant | 0.50 | 37.0 | 2.33e-01 | 91.5% | 29.4% |
ECOD (13)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4425883 | 103.5.1.2 ↗ | alpha arrays › RuvA-C › post-HMGL domain-like › post-HMGL domain-like › DmpG_comm | 0.82 | 60.0 | 5.73e-01 | 78.7% | 80.0% |
| 4665947 | 103.5.1.0 ↗ | alpha arrays › RuvA-C › post-HMGL domain-like › post-HMGL domain-like | 0.81 | 59.0 | 5.53e-01 | 78.7% | 72.4% |
| 3664931 | 101.1.9.0 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain | 0.70 | 49.0 | 4.88e-01 | 76.6% | 90.0% |
| 4945686 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.63 | 47.0 | 3.28e-01 | 83.0% | 56.1% |
| 3920607 | 110.1.1.1 ↗ | alpha arrays › DEATH domain › DEATH domain › DEATH domain › Death | 0.58 | 47.0 | 3.79e-01 | 100.0% | 61.9% |
| 3560167 | 103.1.1.51 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › UBA_SIK3 | 0.57 | 42.0 | 4.47e-01 | 97.9% | 95.0% |
| 4013216 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.56 | 44.0 | 4.09e-01 | 85.1% | 70.0% |
| 3284376 | 101.1.2.78 ↗ | alpha arrays › HTH › HTH › winged helix domain › AlkZ-like | 0.55 | 38.0 | 3.49e-01 | 74.5% | 76.9% |
| 3743460 | 206.1.1.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase | 0.54 | 41.0 | 3.96e-01 | 100.0% | 72.7% |
| 3559536 | 108.1.1.0 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand | 0.54 | 36.0 | 3.30e-01 | 74.5% | 56.0% |
| 166788 | 7579.1.1.44 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_6 | 0.53 | 40.0 | 2.53e-01 | 91.5% | 14.0% |
| 3657853 | 101.1.1.210 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Cac1_C | 0.52 | 37.0 | 3.43e-01 | 89.4% | 58.5% |
| 3611141 | 101.1.15.0 ↗ | alpha arrays › HTH › HTH › HAT1, C-terminal domain | 0.50 | 36.0 | 3.15e-01 | 78.7% | 63.7% |
D2
medium
residues 8-52
Domain cluster:
representative
CATH (21)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3hh0A01 | 1.10.1660.10 | Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › | 0.65 | 53.0 | 4.69e-01 | 97.8% | 70.8% |
| 2hivA01 | 1.10.3260.10 | Mainly Alpha › Orthogonal Bundle › DNA ligase i, domain 1 › DNA ligase, ATP-dependent, N-terminal domain | 0.65 | 47.0 | 3.12e-01 | 100.0% | 17.0% |
| 2kebA00 | 1.10.8.530 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › DNA polymerase alpha-primase, subunit B, N-terminal domain | 0.64 | 50.0 | 4.43e-01 | 100.0% | 89.7% |
| 1v1gA00 | 1.10.238.10 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand | 0.63 | 50.0 | 3.47e-01 | 100.0% | 45.2% |
| 7qv0F01 | 1.10.1200.10 | Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › ACP-like | 0.63 | 46.0 | 3.96e-01 | 97.8% | 46.9% |
| 1fu1A01 | 2.170.210.10 | Mainly Beta › Beta Complex › Dna Repair Protein Xrcc4; Chain: A, domain 1 › DNA double-strand break repair and VJ recombination XRCC4, N-terminal | 0.62 | 45.0 | 3.46e-01 | 82.2% | 50.8% |
| 5xbfA02 | 1.20.80.10 | Mainly Alpha › Up-down Bundle › Acyl-CoA Binding Protein › | 0.62 | 47.0 | 3.79e-01 | 88.9% | 97.0% |
| 6jqsA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.61 | 43.0 | 3.86e-01 | 77.8% | 68.7% |
| 1sr9A02 | 3.30.160.270 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Alpha-isopropylmalate synthase LeuA, regulatory domain | 0.60 | 47.0 | 3.33e-01 | 95.6% | 26.2% |
| 6w6jD01 | 1.10.1780.10 | Mainly Alpha › Orthogonal Bundle › Double Clp-N motif › Clp, N-terminal domain | 0.60 | 48.0 | 3.62e-01 | 100.0% | 61.8% |
| 1ixkA01 | 3.30.70.1170 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Sun protein; domain 3 | 0.59 | 42.0 | 3.35e-01 | 91.1% | 34.3% |
| 4gewA01 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.59 | 46.0 | 4.08e-01 | 100.0% | 59.7% |
| 3p7nA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.58 | 41.0 | 3.63e-01 | 77.8% | 62.5% |
| 7y7oA01 | 3.40.390.30 | Alpha Beta › 3-Layer(aba) Sandwich › Collagenase (Catalytic Domain) › "Metalloproteases (""zincins""), catalytic domain" | 0.57 | 45.0 | 3.37e-01 | 100.0% | 66.4% |
| 6cc0A02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.56 | 42.0 | 3.70e-01 | 84.4% | 65.7% |
| 3mlfE00 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.55 | 39.0 | 3.25e-01 | 91.1% | 40.7% |
| 1ed1A00 | 1.10.150.90 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Immunodeficiency lentiviruses, gag gene matrix protein p17 | 0.54 | 44.0 | 3.42e-01 | 97.8% | 78.1% |
| 3h5tA01 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.53 | 38.0 | 3.82e-01 | 82.2% | 83.0% |
| 1a04A02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.53 | 38.0 | 3.31e-01 | 77.8% | 50.0% |
| 3l2pA01 | 1.10.3260.10 | Mainly Alpha › Orthogonal Bundle › DNA ligase i, domain 1 › DNA ligase, ATP-dependent, N-terminal domain | 0.52 | 45.0 | 2.93e-01 | 100.0% | 77.8% |
| 1vpwA01 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.52 | 38.0 | 3.59e-01 | 84.4% | 64.9% |
ECOD (27)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3983963 | 101.1.9.41 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › ORF6N | 0.74 | 63.0 | 4.85e-01 | 100.0% | 76.2% |
| 3991136 | 103.1.1.17 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › UBA_6 | 0.71 | 56.0 | 5.33e-01 | 100.0% | 74.5% |
| 3589160 | 2484.1.1.231 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_IS66, DDE_Tnp_IS66_C | 0.71 | 62.0 | 4.02e-01 | 100.0% | 23.4% |
| 4668451 | 103.5.1.2 ↗ | alpha arrays › RuvA-C › post-HMGL domain-like › post-HMGL domain-like › DmpG_comm | 0.69 | 54.0 | 5.68e-01 | 88.9% | 100.0% |
| 3942056 | 103.5.1.0 ↗ | alpha arrays › RuvA-C › post-HMGL domain-like › post-HMGL domain-like | 0.67 | 54.0 | 5.49e-01 | 97.8% | 93.3% |
| 3664931 | 101.1.9.0 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain | 0.66 | 53.0 | 5.20e-01 | 93.3% | 94.0% |
| 3476358 | 101.1.9.0 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain | 0.66 | 52.0 | 4.81e-01 | 91.1% | 83.3% |
| 3434189 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.65 | 51.0 | 4.72e-01 | 97.8% | 80.0% |
| 3268224 | 101.1.9.0 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain | 0.65 | 51.0 | 4.92e-01 | 93.3% | 87.3% |
| 1663454 | 304.137.1.3 ↗ | a+b two layers › Alpha-beta plaits › NOL1/NOP2/sun N-terminal ferredoxin-like domain › NOL1/NOP2/sun N-terminal ferredoxin-like domain › RsmF-B_ferredox | 0.64 | 46.0 | 3.68e-01 | 100.0% | 35.6% |
| 4968900 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.64 | 52.0 | 4.99e-01 | 100.0% | 81.5% |
| 5019815 | 103.1.1.0 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain | 0.63 | 52.0 | 5.23e-01 | 93.3% | 100.0% |
| 3948900 | 101.1.3.1 ↗ | alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE | 0.60 | 42.0 | 3.69e-01 | 77.8% | 61.3% |
| 3702894 | 103.1.1.0 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain | 0.60 | 46.0 | 4.51e-01 | 100.0% | 84.0% |
| 3971414 | 101.1.3.1 ↗ | alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE | 0.59 | 40.0 | 3.71e-01 | 71.1% | 68.3% |
| 3354175 | 10.12.1.1 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › cNMP_binding | 0.58 | 43.0 | 3.12e-01 | 86.7% | 68.0% |
| 3941460 | 101.1.3.1 ↗ | alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE | 0.58 | 39.0 | 3.59e-01 | 71.1% | 67.7% |
| 3703388 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.58 | 45.0 | 3.43e-01 | 93.3% | 77.6% |
| 4071326 | 101.1.3.1 ↗ | alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE | 0.57 | 40.0 | 3.46e-01 | 75.6% | 57.5% |
| 3962431 | 101.1.3.0 ↗ | alpha arrays › HTH › HTH › tetra-helical, LuxR-like | 0.57 | 40.0 | 3.50e-01 | 75.6% | 60.0% |
| 4606780 | 101.1.3.1 ↗ | alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE | 0.56 | 39.0 | 3.69e-01 | 77.8% | 73.3% |
| 1177545 | 101.1.3.1 ↗ | alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE | 0.55 | 41.0 | 3.68e-01 | 84.4% | 67.6% |
| 4099721 | 101.1.3.24 ↗ | alpha arrays › HTH › HTH › tetra-helical, LuxR-like › PF27685 | 0.55 | 40.0 | 3.24e-01 | 82.2% | 56.0% |
| 142817 | 101.1.3.1 ↗ | alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE | 0.53 | 38.0 | 3.36e-01 | 75.6% | 59.7% |
| 3365273 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.52 | 37.0 | 2.66e-01 | 77.8% | 28.3% |
| 1841004 | 1091.1.1.1 ↗ | alpha arrays › 60S acidic ribosomal protein P1/P2 › 60S acidic ribosomal protein P1/P2 › 60S acidic ribosomal protein P1/P2 › Ribosomal_60s | 0.51 | 41.0 | 3.24e-01 | 100.0% | 41.4% |
| 5003882 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.51 | 38.0 | 2.89e-01 | 86.7% | 44.0% |