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SRR1747018_scaffold_15_prodigal-single.1__X__X__00389

Bact-Vir

SRR1747018_scaffold_15_prodigal-single.1__X__X__00389

Identity

Kingdom:
phage

Quality

87.4 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 6-54
PDB
D2 medium residues 57-104
PDB
Domain cluster: representative
CATH (42)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2o38A01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.91 43.0 3.78e-01 95.8% 35.4%
1nvmA02 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.80 63.0 5.72e-01 85.4% 71.9%
6wshA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.78 54.0 5.22e-01 79.2% 63.6%
1uxtA01 3.40.605.10 Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 0.78 58.0 3.57e-01 79.2% 13.9%
2x1dA02 1.10.10.2120 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.75 53.0 4.57e-01 75.0% 47.3%
4b43A01 1.10.10.2480 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.72 59.0 5.46e-01 100.0% 86.8%
3tjmA02 1.10.1470.20 Mainly Alpha › Orthogonal Bundle › Protein Yjbj; Chain: A; › Fatty acid synthase; domain 2 0.72 54.0 4.52e-01 85.4% 46.7%
2w0gA00 1.20.58.610 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Cdc37, Hsp90 binding domain 0.71 51.0 3.79e-01 79.2% 56.6%
1yz6A02 1.10.150.190 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Translation initiation factor 2; subunit 1; domain 2 0.69 46.0 3.85e-01 70.8% 40.2%
2l3nA00 1.10.1050.20 Mainly Alpha › Orthogonal Bundle › Ribosomal Protein S4 Delta 41; Chain A, domain 1 › 0.69 52.0 4.18e-01 95.8% 40.4%
1ufzA01 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.68 55.0 5.33e-01 97.9% 82.8%
1ichA00 1.10.533.10 Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas 0.67 53.0 4.53e-01 93.8% 55.2%
2l2dA00 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.67 57.0 5.05e-01 100.0% 79.5%
4bfmA00 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.67 58.0 3.52e-01 100.0% 98.1%
3hh0A01 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.66 51.0 4.58e-01 89.6% 79.2%
1a5tA02 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.66 46.0 4.80e-01 79.2% 92.5%
3g7dA01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.66 39.0 3.21e-01 81.2% 31.4%
3veaA02 1.10.1220.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant › Met repressor-like 0.65 47.0 4.60e-01 93.8% 71.2%
8ctsB01 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.64 46.0 3.82e-01 77.1% 73.6%
5d0yA00 1.10.1760.20 Mainly Alpha › Orthogonal Bundle › Arp2/3 complex 21 kDa subunit ARPC3 › 0.64 46.0 3.31e-01 79.2% 58.1%
1fu1A01 2.170.210.10 Mainly Beta › Beta Complex › Dna Repair Protein Xrcc4; Chain: A, domain 1 › DNA double-strand break repair and VJ recombination XRCC4, N-terminal 0.64 43.0 3.37e-01 72.9% 44.1%
3ousA00 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.64 45.0 3.84e-01 77.1% 78.0%
2jp7A00 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.63 47.0 4.51e-01 89.6% 71.9%
1ic8A01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.63 44.0 3.70e-01 79.2% 93.6%
5yc9B01 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.63 48.0 3.94e-01 89.6% 52.6%
1ixkA01 3.30.70.1170 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Sun protein; domain 3 0.62 47.0 3.80e-01 97.9% 40.0%
1aipH03 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.62 49.0 4.86e-01 97.9% 92.3%
1r8eA02 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.61 47.0 4.28e-01 91.7% 78.1%
2e1qC10 3.30.365.10 Alpha Beta › 2-Layer Sandwich › Aldehyde Oxidoreductase; domain 4 › Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain 0.59 46.0 3.62e-01 100.0% 52.3%
1xb2B01 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.58 46.0 4.44e-01 100.0% 80.0%
6rnzA00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.58 40.0 3.62e-01 79.2% 53.0%
4gewA01 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.58 46.0 4.12e-01 97.9% 72.7%
5i41B00 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.57 42.0 3.96e-01 89.6% 82.1%
2ofyA01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.56 39.0 3.52e-01 79.2% 51.4%
1d2nA02 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.56 40.0 3.62e-01 77.1% 94.0%
4cfsA02 1.10.210.20 Mainly Alpha › Orthogonal Bundle › Uteroglobin › 0.55 42.0 3.80e-01 87.5% 74.3%
6hxpA01 1.10.230.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450-Terp; domain 2 › Cytochrome P450-Terp, domain 2 0.55 43.0 3.41e-01 87.5% 69.7%
2o3fA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 41.0 3.50e-01 85.4% 69.5%
1vpwA01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.52 35.0 3.39e-01 75.0% 59.6%
2mqkA00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.52 39.0 3.57e-01 83.3% 98.5%
1w36C06 1.10.10.990 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.51 44.0 3.92e-01 100.0% 93.1%
3h5tA01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.51 35.0 3.58e-01 72.9% 78.7%
ECOD (59)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4425883 103.5.1.2 ↗ alpha arrays › RuvA-C › post-HMGL domain-like › post-HMGL domain-like › DmpG_comm 0.86 75.0 7.22e-01 97.9% 94.5%
3164063 101.1.9.0 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain 0.85 66.0 5.77e-01 83.3% 85.7%
4983508 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.85 57.0 5.02e-01 75.0% 48.6%
4668451 103.5.1.2 ↗ alpha arrays › RuvA-C › post-HMGL domain-like › post-HMGL domain-like › DmpG_comm 0.84 58.0 6.29e-01 72.9% 100.0%
4147304 103.5.1.2 ↗ alpha arrays › RuvA-C › post-HMGL domain-like › post-HMGL domain-like › DmpG_comm 0.82 72.0 6.70e-01 100.0% 88.3%
4141968 2002.1.1.0 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels 0.82 68.0 3.98e-01 91.7% 79.9%
4665947 103.5.1.0 ↗ alpha arrays › RuvA-C › post-HMGL domain-like › post-HMGL domain-like 0.81 71.0 6.72e-01 100.0% 91.4%
4319059 103.5.1.2 ↗ alpha arrays › RuvA-C › post-HMGL domain-like › post-HMGL domain-like › DmpG_comm 0.81 71.0 6.50e-01 100.0% 85.7%
3366705 101.1.9.0 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain 0.75 54.0 4.95e-01 79.2% 75.4%
3290494 101.1.9.8 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › IF2_N 0.74 50.0 5.03e-01 72.9% 92.0%
4100614 101.1.9.8 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › IF2_N 0.73 55.0 5.37e-01 85.4% 92.7%
1098014 101.1.9.8 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › IF2_N 0.72 59.0 5.49e-01 100.0% 88.1%
3808441 4095.1.1.1 ↗ alpha bundles › ATP-dependent DNA ligase DNA-binding domain › ATP-dependent DNA ligase DNA-binding domain › ATP-dependent DNA ligase DNA-binding domain › DNA_ligase_A_N 0.72 51.0 3.73e-01 91.7% 26.2%
5031544 4095.1.1.0 ↗ alpha bundles › ATP-dependent DNA ligase DNA-binding domain › ATP-dependent DNA ligase DNA-binding domain › ATP-dependent DNA ligase DNA-binding domain 0.72 53.0 4.28e-01 83.3% 42.0%
3710888 4095.1.1.1 ↗ alpha bundles › ATP-dependent DNA ligase DNA-binding domain › ATP-dependent DNA ligase DNA-binding domain › ATP-dependent DNA ligase DNA-binding domain › DNA_ligase_A_N 0.71 51.0 3.81e-01 85.4% 29.2%
3664931 101.1.9.0 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain 0.71 51.0 5.08e-01 79.2% 94.0%
4551162 101.1.9.8 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › IF2_N 0.71 52.0 4.67e-01 81.2% 68.6%
3325524 101.1.9.8 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › IF2_N 0.70 50.0 4.88e-01 79.2% 85.5%
3959535 304.137.1.0 ↗ a+b two layers › Alpha-beta plaits › NOL1/NOP2/sun N-terminal ferredoxin-like domain › NOL1/NOP2/sun N-terminal ferredoxin-like domain 0.70 58.0 4.09e-01 100.0% 48.2%
2876157 101.1.9.105 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › PF30176 0.70 50.0 4.96e-01 81.2% 98.1%
3702894 103.1.1.0 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain 0.69 53.0 5.30e-01 91.7% 92.0%
3260073 103.1.1.1 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › UBA 0.69 50.0 4.80e-01 83.3% 66.7%
3367 110.1.1.1 ↗ alpha arrays › DEATH domain › DEATH domain › DEATH domain › Death 0.67 53.0 4.53e-01 93.8% 55.2%
4460243 101.1.9.8 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › IF2_N 0.67 49.0 4.83e-01 85.4% 94.5%
3999068 103.1.1.27 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › UBA_7 0.67 56.0 5.42e-01 100.0% 85.5%
3226566 103.1.1.0 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain 0.67 49.0 4.69e-01 85.4% 66.7%
3368577 103.1.1.0 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain 0.67 54.0 5.07e-01 100.0% 76.9%
4028002 103.1.1.0 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain 0.67 43.0 4.11e-01 72.9% 54.5%
3593684 103.18.1.0 ↗ alpha arrays › RuvA-C 0.67 49.0 5.02e-01 89.6% 93.3%
3315600 3764.1.1.0 ↗ alpha arrays › Repressor activator protein 1 (RAP1) helical bundle domain › Repressor activator protein 1 (RAP1) helical bundle domain › Repressor activator protein 1 (RAP1) helical bundle domain 0.66 47.0 4.64e-01 81.2% 74.5%
4982623 4095.1.1.1 ↗ alpha bundles › ATP-dependent DNA ligase DNA-binding domain › ATP-dependent DNA ligase DNA-binding domain › ATP-dependent DNA ligase DNA-binding domain › DNA_ligase_A_N 0.66 50.0 4.30e-01 85.4% 52.5%
4948827 304.137.1.0 ↗ a+b two layers › Alpha-beta plaits › NOL1/NOP2/sun N-terminal ferredoxin-like domain › NOL1/NOP2/sun N-terminal ferredoxin-like domain 0.66 49.0 4.33e-01 93.8% 52.5%
4490512 103.1.1.0 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain 0.66 53.0 4.96e-01 97.9% 78.5%
1827815 101.1.9.17 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.64 49.0 4.51e-01 89.6% 82.4%
3560167 103.1.1.51 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › UBA_SIK3 0.64 42.0 4.54e-01 70.8% 82.5%
4082890 110.1.1.1 ↗ alpha arrays › DEATH domain › DEATH domain › DEATH domain › Death 0.63 48.0 4.08e-01 93.8% 46.3%
4090636 101.1.9.0 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain 0.62 54.0 4.84e-01 100.0% 85.7%
3222360 103.1.1.21 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › AMPK_alpha_AID 0.61 40.0 4.09e-01 70.8% 71.1%
3968254 101.1.1.58 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.61 54.0 4.26e-01 95.8% 67.4%
None — 0.61 53.0 3.18e-01 97.9% 24.0%
4963848 5068.1.1.0 ↗ alpha bundles › a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) › a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) › a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) 0.60 50.0 3.82e-01 100.0% 74.6%
3391086 206.1.1.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.60 51.0 2.95e-01 97.9% 15.2%
None — 0.60 51.0 3.06e-01 97.9% 20.3%
3973662 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.59 52.0 4.07e-01 97.9% 64.0%
3166016 101.1.4.17 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_26 0.59 43.0 4.01e-01 79.2% 100.0%
3752299 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.58 49.0 3.02e-01 97.9% 44.3%
3728726 101.1.1.2 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_AraC 0.58 48.0 4.15e-01 91.7% 81.3%
3964894 101.1.1.58 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.58 51.0 4.01e-01 97.9% 63.0%
3727621 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.58 49.0 4.25e-01 100.0% 78.8%
4195932 206.1.1.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.58 48.0 2.91e-01 97.9% 20.5%
3975658 101.1.1.58 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.57 50.0 4.03e-01 95.8% 64.4%
3587817 101.1.4.3 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 0.55 37.0 3.54e-01 72.9% 61.7%
3963429 101.1.4.0 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like 0.55 37.0 3.58e-01 79.2% 61.8%
3587609 101.1.4.2 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › LacI 0.54 36.0 3.66e-01 72.9% 76.0%
2770010 101.1.4.2 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › LacI 0.53 36.0 2.61e-01 77.1% 23.5%
1563574 101.1.4.0 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like 0.52 39.0 3.57e-01 83.3% 98.5%
1149482 101.1.4.2 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › LacI 0.51 35.0 3.58e-01 72.9% 78.7%
3987930 101.1.4.2 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › LacI 0.51 36.0 3.29e-01 79.2% 52.9%
4009083 101.1.4.2 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › LacI 0.50 35.0 3.34e-01 77.1% 61.7%